View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11818_low_11 (Length: 387)
Name: NF11818_low_11
Description: NF11818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11818_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 376
Target Start/End: Complemental strand, 34509252 - 34508893
Alignment:
| Q |
19 |
atttctctttggtaacattcatcagttcacacaaaattccaccttctctccacacaaatttcatttcatttgttgttcttcttcttcaccctcatcacct |
118 |
Q |
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| T |
34509252 |
atttctctttggcaacattcatcggttcacataaaattccaccttctctccacacaaatttcattt--tttcttcttcttcttcttcaccctcatcgcct |
34509155 |
T |
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| Q |
119 |
ccacttctggcaacctcacctgaaaccacttcgaggacaatgagattgagagt---aagaaaattccaattcagatttgaatctcgaaatcatccccatc |
215 |
Q |
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| T |
34509154 |
ccacttccggcaacctcacctgaaaccacttcaagaatgatgagattgagagcgagaagaaaattccaattcaaatctgctgctcaaaatcatccccatc |
34509055 |
T |
|
| Q |
216 |
tccatatgcctgtttcaatccatggaaacccattggatttttctctccaggtaatctattatattcacc-nnnnnnnnagttaatcaagtgtagttaatc |
314 |
Q |
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||||||||||||||||||||| ||||||| | |||||||||||||||||||||||| ||| ||| |||| ||||||||| |||||||||| |
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| T |
34509054 |
tccatatgcctgtttcaatccgtggaaacacgttggatttttctctccaggtaatccattctatgcaccttttttttttgttaatcaactgtagttaatt |
34508955 |
T |
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| Q |
315 |
tgttttatttttaattgtatgctatttctttaatttcaaaatatgggtttggttctctctct |
376 |
Q |
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| T |
34508954 |
tgttttatttttaattctatgctatttctttaatttcaaaatatgggtttggttctgtctct |
34508893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 108; Significance: 4e-54; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 44619811 - 44619605
Alignment:
| Q |
18 |
catttctctttggtaacattcatcagttcacacaaaattccaccttctctccacacaaatttcatttcatttgttgttcttcttcttcaccctcatcacc |
117 |
Q |
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| T |
44619811 |
catttctctttggtaacattcaacggttcacgtaaaattccaccttctctccacacaaatttcattt--tttcttcttcttcttcttcaccctcatcgtc |
44619714 |
T |
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| Q |
118 |
tccacttctggcaacctcacctgaaaccacttcgaggacaatgagattgagag---taagaaaattccaattcagatttgaatctcgaaatcatccccat |
214 |
Q |
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|||||||| |||||||||||||||||| |||||||| | ||||||||||||| |||||||||||||||||| || || ||| ||||||||||||| |
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| T |
44619713 |
tccacttccggcaacctcacctgaaactacttcgagaatgatgagattgagagcgataagaaaattccaattcaaatctgccactcaaaatcatccccat |
44619614 |
T |
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| Q |
215 |
ctccatatg |
223 |
Q |
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| T |
44619613 |
ctccatatg |
44619605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 205 - 326
Target Start/End: Complemental strand, 44785017 - 44784896
Alignment:
| Q |
205 |
tcatccccatctccatatgcctgtttcaatccatggaaacccattggatttttctctccaggtaatctattatattcaccnnnnnnnnagttaatcaagt |
304 |
Q |
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|||||| |||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||| ||| |||||||| |||||| |||| |
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| T |
44785017 |
tcatccgcatctccacatgcctgtttcaatccatggaaacacgttggatttttctctccaggtaatccattctattcaccattttttttgttaataaagt |
44784918 |
T |
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| Q |
305 |
gtagttaatctgttttattttt |
326 |
Q |
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||||||||| |||||||||||| |
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| T |
44784917 |
gtagttaatttgttttattttt |
44784896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 43 - 114
Target Start/End: Complemental strand, 44785081 - 44785013
Alignment:
| Q |
43 |
gttcacacaaaattccaccttctctccacacaaatttcatttcatttgttgttcttcttcttcaccctcatc |
114 |
Q |
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||||||||||| ||||||||||| ||||||||||||||||| | ||||||||||||||| |||||||| |
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| T |
44785081 |
gttcacacaaatttccaccttctttccacacaaatttcatt---atgattgttcttcttcttccccctcatc |
44785013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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