View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11818_low_13 (Length: 302)
Name: NF11818_low_13
Description: NF11818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11818_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 99 - 222
Target Start/End: Complemental strand, 46466693 - 46466572
Alignment:
| Q |
99 |
caataattacatagaaaaaacttgacaatataataagagaataatcatagtgcaaatggagaagaatttcaacaaaagaaattagaagaccgnnnnnnna |
198 |
Q |
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| T |
46466693 |
caataattacatagaaaaaacttgacaatataataagagaa--atcatagtgcaaatggagaagaatttcaacaaaagaaattagaagaccgttttttta |
46466596 |
T |
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| Q |
199 |
agtataaagagaactattacactt |
222 |
Q |
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| T |
46466595 |
agtataaagagaactattacactt |
46466572 |
T |
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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 282
Target Start/End: Complemental strand, 46466587 - 46466553
Alignment:
| Q |
248 |
gagaactattacactttcttgaaaataacataatt |
282 |
Q |
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| T |
46466587 |
gagaactattacactttcttgaaaataacataatt |
46466553 |
T |
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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 100
Target Start/End: Complemental strand, 28302632 - 28302563
Alignment:
| Q |
32 |
atgtaaggcta-atatgccacctctatgtcattcaataaagttagtttttcattccacaaaactctaaca |
100 |
Q |
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| T |
28302632 |
atgtaaggctatatatgccacctctatgttattcaataaagttagtttttcattccacaaaactctaaca |
28302563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 45345788 - 45345871
Alignment:
| Q |
19 |
tttccttcttattatgtaaggcta-atatgccacctctatgtcattcaataaagttagtt-tttcattccacaaaactctaaca |
100 |
Q |
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| T |
45345788 |
tttccttcttatcatgtaaggctatatataccacctctatgttattcaataaacttagttgtttcattccacaaaactctaaca |
45345871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 45341435 - 45341519
Alignment:
| Q |
19 |
tttccttcttattatgtaaggcta-atatgccacctctatgtcattcaataaagttag-tttttcattccacaaaactctaacaa |
101 |
Q |
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| T |
45341435 |
tttccttcttctcatgtaaggctatatatgccacctctatgttattcaataaacttagttttttcattccataaaactctaacaa |
45341519 |
T |
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