View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11818_low_14 (Length: 300)
Name: NF11818_low_14
Description: NF11818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11818_low_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 25 - 295
Target Start/End: Complemental strand, 54714434 - 54714165
Alignment:
| Q |
25 |
gctgatcagcttcaatatctttcaccggttgattaactcttccatcacccccagcagcagcattattcagaataccagcttcatctttcaccagttgatt |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54714434 |
gctgatcagcttcaatatctttcaccggttgattaactcttccatcacccccggcagcagcactattcagaataccagcttcatctttcaccagttgatt |
54714335 |
T |
|
| Q |
125 |
agctcttccttcaccttcagcagcagcactatagccattgagaaataatgccacagcaaggacaactagaagaattgaagtttttgccatagtgtacatt |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
54714334 |
agctcttccttcaccttcagcagcagcactatagccattgagaaataatgccacagcaaggacaactagaagaattgaagtttttgccatagtgtacaat |
54714235 |
T |
|
| Q |
225 |
atcactcaagtatttttattttcttcctatcgttattgttttgcatggaataaaatagggttcatctcact |
295 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
54714234 |
atcactc-agtatttttattttcttcctatcgttattgttttgcatggaataaaataggcttcatatcact |
54714165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 53 - 295
Target Start/End: Complemental strand, 54721335 - 54721085
Alignment:
| Q |
53 |
ttgattaactcttccatcacccccagcagcagcattattcagaataccagcttcatctttcaccagttgattagctcttccttcaccttcagcagcagca |
152 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||| ||||||| ||||||| |||| |
|
|
| T |
54721335 |
ttgattaactcttccatcaccctcagcagcagcactattcagagtaccaacttcatctttcaccagttgattagctcttacttcaccctcagcagaagca |
54721236 |
T |
|
| Q |
153 |
ctatagccattgagaaataatgccacagcaaggacaactagaagaattgaa---------gtttttgccatagtgtacattatcactcaagtatttttat |
243 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||| ||||| || |||| ||||||||||||||||||| |||| || |||| ||||| |
|
|
| T |
54721235 |
ctatagccattcagaattaatgccacagcaaggacaagtagaacaagtgaaacagtactggtttttgccatagtgtacaatatctatc-agtaactttat |
54721137 |
T |
|
| Q |
244 |
tttcttcctatcgttattgttttgcatggaataaaatagggttcatctcact |
295 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
54721136 |
ttccttcctatcgttattgttttgcatggaataaaataggcttcatatcact |
54721085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 54721357 - 54721298
Alignment:
| Q |
100 |
cagcttcatctttcaccag---ttgattagctcttccttcaccttcagcagcagcactat |
156 |
Q |
| |
|
|||||||||||||||| || ||||||| ||||||| ||||| |||||||||||||||| |
|
|
| T |
54721357 |
cagcttcatctttcactagtaattgattaactcttccatcaccctcagcagcagcactat |
54721298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 53 - 195
Target Start/End: Complemental strand, 5297488 - 5297346
Alignment:
| Q |
53 |
ttgattaactcttccatcacccccagcagcagcattattcagaataccagcttcatctttcaccagttgattagctcttccttcaccttcagcagcagca |
152 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |||||||| |||||| |||||||||||||||||||||||||||| ||||||| ||||||| |||| |
|
|
| T |
5297488 |
ttgattaactcttccatcaccctcagcagcagcactattcagagtaccagattcatctttcaccagttgattagctcttacttcaccctcagcagaagca |
5297389 |
T |
|
| Q |
153 |
ctatagccattgagaaataatgccacagcaaggacaactagaa |
195 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
5297388 |
ctatagccattcagaattaatgccacagcaaggacaactagaa |
5297346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 101 - 189
Target Start/End: Complemental strand, 5302868 - 5302783
Alignment:
| Q |
101 |
agcttcatctttcaccagttgattagctcttccttcaccttcagcagcagcactatagccattgagaaataatgccacagcaaggacaa |
189 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||| |||| || ||||||||||||||||||| | ||||||||||||| ||||||||| |
|
|
| T |
5302868 |
agcttcatctttctccagttgattatctcttcccacacc--ca-cagcagcactatagccattcacaaataatgccacaacaaggacaa |
5302783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 156
Target Start/End: Complemental strand, 5297510 - 5297451
Alignment:
| Q |
100 |
cagcttcatctttcaccag---ttgattagctcttccttcaccttcagcagcagcactat |
156 |
Q |
| |
|
|||||||||||||||| || ||||||| ||||||| ||||| |||||||||||||||| |
|
|
| T |
5297510 |
cagcttcatctttcactagtaattgattaactcttccatcaccctcagcagcagcactat |
5297451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University