View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11818_low_15 (Length: 293)
Name: NF11818_low_15
Description: NF11818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11818_low_15 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 43 - 293
Target Start/End: Original strand, 45567957 - 45568207
Alignment:
| Q |
43 |
atatgagataactggtccgttaagacaatttaagacctgttaattaaccaattaagacacgaggnnnnnnnnnctgcatcttctcagcggtccatttgct |
142 |
Q |
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| T |
45567957 |
atatgagataactggtccgttaagacaatttaagacctgttaattaaccaattaagacacgaggaaaaaaaaactgcatcttctcagcggtccatttgct |
45568056 |
T |
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| Q |
143 |
tttcaaataatttcttattgattaaattaacactatcctccaagactcaaatagggataatgaaaaattgtggcaagtatcggtgcaagcaattactcta |
242 |
Q |
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| T |
45568057 |
tttcaaataatttcttattgattaaattaacactatcctccaagactcaaatagggataatgaaaaattgtggcaagtatcggtgcaagcaattactcta |
45568156 |
T |
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| Q |
243 |
taaatgtacaaaaaacaaattaaaactaaattaagggtatctaacaatcct |
293 |
Q |
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| T |
45568157 |
taaatgtacaaaaaactaattaaaactaaattaagggtatctaacaatcct |
45568207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 23 - 235
Target Start/End: Complemental strand, 35817341 - 35817131
Alignment:
| Q |
23 |
ttctcatctacccttttcagatatgagataactggtccgttaagacaatttaagacctgttaattaaccaattaagacacgaggnnnnnnnnnc-tgcat |
121 |
Q |
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| T |
35817341 |
ttctcatctacccttttcagat--gagataactggtccattgagacaatttaagacctgttaat-aaccatttaagacacgaggaaaaaaaaacctgcat |
35817245 |
T |
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| Q |
122 |
cttctcagcggtccatttgcttttcaaataatttcttattgattaaattaacactatcctccaagactcaaatagggataatgaaaaattgtggcaagta |
221 |
Q |
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| T |
35817244 |
cttcccagtggtccatttgcttttcaaataatttctcatcgattaaattaacactatcatccaagactcaaatagggataatgaaaaattgtggcaagta |
35817145 |
T |
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| Q |
222 |
tcggtgcaagcaat |
235 |
Q |
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| T |
35817144 |
tcggtgcaagcaat |
35817131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 223
Target Start/End: Original strand, 45093021 - 45093218
Alignment:
| Q |
16 |
ctttaaattctcatctacccttttcagatatgagataactggtccgttaagacaatttaagacctgttaattaaccaattaagacacgaggnnnnnnnnn |
115 |
Q |
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| T |
45093021 |
ctttaaattctcatctacccttttgagatatgagagaactcttccatt--------ttaagacctgttaattaaccatttaatacacgaggaaaaaaact |
45093112 |
T |
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| Q |
116 |
ctgcatcttctcagcggtccatttgcttttcaaataatttcttattgattaaattaacactatcctccaagactcaaatagggataatgaaaaattgtgg |
215 |
Q |
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| T |
45093113 |
-tgcattttctcaatggtccagttgcttttcaaattatttctcaatgattagattaac-ctatcatccaagactcaaatagggatagtgaaaaattgtgg |
45093210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 293
Target Start/End: Complemental strand, 35816864 - 35816826
Alignment:
| Q |
255 |
aaacaaattaaaactaaattaagggtatctaacaatcct |
293 |
Q |
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| T |
35816864 |
aaactaattaaaactaaattaagggtatctaacaatcct |
35816826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 293
Target Start/End: Original strand, 45093489 - 45093527
Alignment:
| Q |
255 |
aaacaaattaaaactaaattaagggtatctaacaatcct |
293 |
Q |
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| T |
45093489 |
aaactaattaaaactaaatgaagggtatctaacaatcct |
45093527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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