View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11818_low_18 (Length: 250)
Name: NF11818_low_18
Description: NF11818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11818_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 124 - 244
Target Start/End: Original strand, 30767942 - 30768062
Alignment:
| Q |
124 |
cacatacttgttgcgattgccatggaatgaaaccattgtgatcttggaaggaatgaagagagaggccaaggttttcagaagggtagttttgaaaattgat |
223 |
Q |
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| T |
30767942 |
cacatacttgttgtgattgccatggaatgaaaccattgtgatcttggaaggaatgaagagagaggccaaggttttcagaagggtagttttgaaaattgat |
30768041 |
T |
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| Q |
224 |
ggatgaagaagttgatgatgt |
244 |
Q |
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| T |
30768042 |
ggatgaagaagtagaagatgt |
30768062 |
T |
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Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 30767819 - 30767897
Alignment:
| Q |
1 |
tgaatccaactttctttatataatcattggttgtttcattgttccaattctcaattctatgatattggttctcaaaaaa |
79 |
Q |
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| T |
30767819 |
tgaatccaactttctttatataatcattggttgtttcattgttccaattctcaattctatgatattggttctcaaaaaa |
30767897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 5053504 - 5053580
Alignment:
| Q |
1 |
tgaatccaactttctttatataatcattggttgtttcattgttccaattctcaattctatgatattggttctcaaaa |
77 |
Q |
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| T |
5053504 |
tgaatccaactttctttatataatcagtggttgtttcactgctccatttcacaattctcttatattggctctcaaaa |
5053580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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