View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11818_low_2 (Length: 514)
Name: NF11818_low_2
Description: NF11818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11818_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 28 - 506
Target Start/End: Original strand, 19746057 - 19746539
Alignment:
| Q |
28 |
tctgggggaaaaagcatttgactagtcacacaccatttactctcttggaacaacccacaccctacgtccctacccac----aaatgacaagctaatcaaa |
123 |
Q |
| |
|
|||| |||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||| |
|
|
| T |
19746057 |
tctgagggaaagatcatttgactagtcacacaccattgactctcttggaacaacccacaccctatgtccctacccacccacaaacgacaagctaatcaaa |
19746156 |
T |
|
| Q |
124 |
agaatgtaaagaaattctaaacatgtatatgcacaagttgaaatattacttggttgttaatttgtccaatctcacgtaaacatatccacggggactagtc |
223 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
19746157 |
agaatgtaaagaaattttaaacatatatatgcacaagttgaaatattacttggttgttaatttatccaatctcacgtaaacatatccacggggactagtc |
19746256 |
T |
|
| Q |
224 |
ttgaaagaaaatagtttcaggtcctcactaaactgcacaaggacctcctccgcaatagagtgggctcgccgaccccatggcacattttgcaagacaaccc |
323 |
Q |
| |
|
||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
19746257 |
ttgaaagcaaatagtttgaggtcctcactgaactgcacaaggacctcctccgcaatagagtgggctcgctgaccccatggcacattttgcaagacaaccc |
19746356 |
T |
|
| Q |
324 |
caccaccatttcctccatcaccaatctacacatgtaagatagggacatagaagagcaccaactttaaagcaatgtttaacagtattcatcatataattca |
423 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19746357 |
caccaccatttcctccgtcaccaatctacacatgtaagatagggacatagaagagcaccaactttaaagcaatgtttaacagtattcatcatataattca |
19746456 |
T |
|
| Q |
424 |
actgaagatctctacaataatccgattgaaagacctggtaccttaggatcagtctcgtcttcttcctcccatccatctgtgct |
506 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19746457 |
actgaagatctctacaataatccgatttaaagacctggtaccttaggatcagtctcgtcttcttcctcccatccatctgtgct |
19746539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University