View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11818_low_21 (Length: 240)
Name: NF11818_low_21
Description: NF11818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11818_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 10 - 99
Target Start/End: Complemental strand, 3448349 - 3448260
Alignment:
| Q |
10 |
ctgcaaaaattgttgacttaggaaatgattttctaatttctattaaaaaataataataatgtacatgcagtgagtacaatattaaaacta |
99 |
Q |
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| T |
3448349 |
ctgcaaaaattgttgacttaggaaatgattttctaatttctattaaaaaataataataatgtacatgcagtgagtacaatattaaaacta |
3448260 |
T |
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Target: chr2; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 141 - 221
Target Start/End: Complemental strand, 3448249 - 3448169
Alignment:
| Q |
141 |
aaggggttatttatagctagtctgattgggtttgacttaatccccatgaatctggatattatgaccgatatttagcctcaa |
221 |
Q |
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| T |
3448249 |
aaggggttatttatagctagtctgattgggtttgacttaatcctcatgaatctggatattatgaccgatatttagcctcaa |
3448169 |
T |
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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 69 - 137
Target Start/End: Original strand, 37538305 - 37538373
Alignment:
| Q |
69 |
tgtacatgcagtgagtacaatattaaaactaatgtttaatatctaattaggtcatgtctcgaaaatgat |
137 |
Q |
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| T |
37538305 |
tgtacttgaagtgagtgcaatattaaaactagagtttaatatctaattaggtcatgccttggaaatgat |
37538373 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 3774755 - 3774832
Alignment:
| Q |
69 |
tgtacatgcagtgagtacaatattaaaactaatgtttaatatctaattaggtcatgtctcgaaaatgatcttaagggg |
146 |
Q |
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| T |
3774755 |
tgtacttgcagtgagtacaatactgaaactagggtttagtatctaattaggtcatgccttgagaatggtctcaagggg |
3774832 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 154
Target Start/End: Complemental strand, 47834533 - 47834457
Alignment:
| Q |
79 |
gtgagtacaatat-taaaactaatgtttaatatctaattaggtcatgtctcgaaaatgatcttaaggggttatttat |
154 |
Q |
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| T |
47834533 |
gtgagtacaatatctaaaactagggtttaatatttgtttaggtcatgccttgaaaatgatctcaaaggggtatttat |
47834457 |
T |
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