View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11818_low_3 (Length: 482)
Name: NF11818_low_3
Description: NF11818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11818_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 15 - 465
Target Start/End: Complemental strand, 53040373 - 53039923
Alignment:
| Q |
15 |
atggaaattccatttttagtaatatatttctactgcaatatgttgtctaattacannnnnnnnnnnnnnnnatatagatggtctgatatgggtgagtgaa |
114 |
Q |
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| T |
53040373 |
atggaaattccatttttagtaatatatttctactgcaatatgttgtctaattgcatttttctttttcttttatatagatggtctgatatgggtgagtgaa |
53040274 |
T |
|
| Q |
115 |
tggaacgctttgcagcatcgtgttgcatctgcattcttagcttctgtttacagtgactatatgcttacaacgcagactcccaatataaaatgtgattcag |
214 |
Q |
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| T |
53040273 |
tggaacgctttgcagcatcctgttgcatctgcattcttagcttctgtttacagtgactatatgcttacaacgcagactcccaatataaaatgtgattcag |
53040174 |
T |
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| Q |
215 |
attccttcaaaccatcagatcttcgagactttgccagatctcaggtatgcattcattattatttttgtagaatactctctctggcccttaatataagaag |
314 |
Q |
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| T |
53040173 |
attccttcaaaccatcagatcttcgagactttgccagatctcaggtatgcattcattattatttttgtagaatactctctctggcccttaatataagaag |
53040074 |
T |
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| Q |
315 |
aatttaccaaaatcacagatcaaggagtttatannnnnnngggtacagatcaaggagcttatttaattagtataaaattgagtggttattgttccaatta |
414 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
53040073 |
aatttaccaaaatcacagatcaaggagtttttttttttttgggtacagatcaaggagcttatttaattagtataaaattgaatggttattgttccaatta |
53039974 |
T |
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| Q |
415 |
aaccaataacattaaatgttttatacctacatgtaaatttatactaaacat |
465 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53039973 |
aatcaataacattaaatgttttatacctacatgtaaatttatactaaacat |
53039923 |
T |
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