View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11818_low_5 (Length: 461)
Name: NF11818_low_5
Description: NF11818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11818_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 26 - 444
Target Start/End: Original strand, 10084314 - 10084717
Alignment:
| Q |
26 |
aagtagtgtaaactactacttgattgcttgcttttgaagattattacggattgctaattaaatgctaataattcctcctcattctcataatattcaaagt |
125 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10084314 |
aagtagtgtaaactactacttgattgcttgcttttgaagattattacggattgctaattaaatgctaataattcctcctcattctcataatattcaaagt |
10084413 |
T |
|
| Q |
126 |
tacatttcttcatt-------atatcatttgcaataacatcaacaatacaatttggcatcaagtttaggacttaatgattaaccatatatatagccgctc |
218 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10084414 |
tacatttcttcattgtatctcatatcatttgcaataacatcaacaatacaatttggcatcaagtttaggacttaatgattaaccatatatatagccgctc |
10084513 |
T |
|
| Q |
219 |
taactagatcatgagtaacaacctgcgttcatcttttcatgatacaagttcgagtgctaaaatgattaaatgatcttcaatcacaaccgtcgctgccgaa |
318 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| | || ||| |
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| T |
10084514 |
taactagatcatgagtaacaacctgcgttcatgttttcatgatacaagttcgagtgctaaaa--------tgatcttcaatcacaaccatagccgcc--- |
10084602 |
T |
|
| Q |
319 |
gaaaccaccagatcgacattatgttacaggtatcgaccaaccatttgattatgttattttacaaaaattgtcaccactcacgggttggtcatctggtacc |
418 |
Q |
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|| | | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10084603 |
------actaaa-----atgttgttacaggtatcgaccaaccatttgattatgttattttacaaaaattgtcaccactcacgggttggtcatctggtacc |
10084691 |
T |
|
| Q |
419 |
attggtgatgatgttggcgttagaat |
444 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
10084692 |
attggtgatgatgttggcgttagaat |
10084717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 35 - 229
Target Start/End: Original strand, 10080250 - 10080451
Alignment:
| Q |
35 |
aaactactacttgattgcttgcttttgaagatt-attacggattgctaattaaatgctaataattcctcct-cattctcataatattcaaagttacattt |
132 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||| |||| ||| ||||||||||||||||| ||||||| || |||||||||||||||||||||||||||| |
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| T |
10080250 |
aaactactacttgattgc--gcttttggagatttattatggactgctaattaaatgctaagaattccttcttcattctcataatattcaaagttacattt |
10080347 |
T |
|
| Q |
133 |
cttcatt-------atatcatttgcaataacatcaacaatacaatttggcatcaagtttaggacttaatgattaaccatatatatagccgctctaactag |
225 |
Q |
| |
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||||||| |||||||| | |||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| || |||| ||| |
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| T |
10080348 |
cttcattttatctcatatcattcgtaatagcatcaacaatacaatttggcatcaaattgaggacttaatgattaaccatatatatagctgccctaattag |
10080447 |
T |
|
| Q |
226 |
atca |
229 |
Q |
| |
|
|||| |
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|
| T |
10080448 |
atca |
10080451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 315 - 419
Target Start/End: Original strand, 11191585 - 11191689
Alignment:
| Q |
315 |
cgaagaaaccaccagatcgacattatgttacaggtatcgaccaaccatttgattatgttattttacaaaaattgtcaccactcacgggttggtcatctgg |
414 |
Q |
| |
|
||||||||||||| |||||| || ||||| || ||||||||||| || ||||||||||||||||||||||||||||||||||| || |||||||||| | |
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| T |
11191585 |
cgaagaaaccaccggatcgatatgttgttatagttatcgaccaacaatctgattatgttattttacaaaaattgtcaccactcatggattggtcatctag |
11191684 |
T |
|
| Q |
415 |
tacca |
419 |
Q |
| |
|
||||| |
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|
| T |
11191685 |
tacca |
11191689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 209 - 277
Target Start/End: Original strand, 10096913 - 10096981
Alignment:
| Q |
209 |
atagccgctctaactagatcatgagtaacaacctgcgttcatcttttcatgatacaagttcgagtgcta |
277 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| | |||||||| || | |||||||||| |
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| T |
10096913 |
atagccgctctaactagattatgagtaacaacctgcgttcatgtcttcatgatgcatgctcgagtgcta |
10096981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 312 - 398
Target Start/End: Complemental strand, 34374414 - 34374328
Alignment:
| Q |
312 |
tgccgaagaaaccaccagatcgacattatgttacaggtatcgaccaaccatttgattatgttattttacaaaaattgtcaccactca |
398 |
Q |
| |
|
|||||||||||||||| ||||||| | || ||||| |||||||||||||| ||||||| ||| |||||||||||| ||||||||| |
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|
| T |
34374414 |
tgccgaagaaaccaccggatcgacgtgttgctacagatatcgaccaaccatctgattatattactttacaaaaatttacaccactca |
34374328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 292 - 419
Target Start/End: Original strand, 18251835 - 18251962
Alignment:
| Q |
292 |
tcttcaatcacaaccgtcgctgccgaagaaaccaccagatcgacattatgttacaggtatcgaccaaccatttgattatgttattttacaaaaattgtca |
391 |
Q |
| |
|
||||||||||| |||| ||||||| |||||||||| |||||| | ||| |||||||||| ||||||||| ||||||| ||| |||||||||||| || |
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| T |
18251835 |
tcttcaatcaccaccgccgctgccaaagaaaccactggatcgatgtgatgctacaggtatcaaccaaccatctgattatattactttacaaaaattccca |
18251934 |
T |
|
| Q |
392 |
ccactcacgggttggtcatctggtacca |
419 |
Q |
| |
|
||||| |||| |||||||||| |||||| |
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|
| T |
18251935 |
ccacttacggattggtcatctcgtacca |
18251962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 346 - 420
Target Start/End: Original strand, 10494419 - 10494493
Alignment:
| Q |
346 |
aggtatcgaccaaccatttgattatgttattttacaaaaattgtcaccactcacgggttggtcatctggtaccat |
420 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||| |||||||||||| |||||||||| ||||||| |
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| T |
10494419 |
aggtatcgaccaaccatctgattatgttactttacaaaaattcacaccactcacggattggtcatctagtaccat |
10494493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 292 - 417
Target Start/End: Complemental strand, 32162613 - 32162488
Alignment:
| Q |
292 |
tcttcaatcacaaccgtcgctgccgaagaaaccaccagatcgacattatgttacaggtatcgaccaaccatttgattatgttattttacaaaaattgtca |
391 |
Q |
| |
|
||||||||||| |||| ||||| |||||||||| ||||||| | ||||| ||||||| ||||||||| ||||||||||| |||||| ||||| || |
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|
| T |
32162613 |
tcttcaatcaccaccggtgctgctgaagaaaccattggatcgacgtgttgttataggtatcaaccaaccatctgattatgttaatttacagaaattccca |
32162514 |
T |
|
| Q |
392 |
ccactcacgggttggtcatctggtac |
417 |
Q |
| |
|
| ||||| || |||||||||| |||| |
|
|
| T |
32162513 |
ctactcatggattggtcatctagtac |
32162488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 290 - 398
Target Start/End: Original strand, 11228102 - 11228210
Alignment:
| Q |
290 |
gatcttcaatcacaaccgtcgctgccgaagaaaccaccagatcgacattatgttacaggtatcgaccaaccatttgattatgttattttacaaaaattgt |
389 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||| |||| || | || |||| ||||||||| ||| | |||||| ||| |||||||||||| |
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| T |
11228102 |
gatcttcaatcaccaccgccgctgccgaagaaaccactagattgatgtgttgctacaagtatcgacccaccctctgattacattactttacaaaaattca |
11228201 |
T |
|
| Q |
390 |
caccactca |
398 |
Q |
| |
|
||||||||| |
|
|
| T |
11228202 |
caccactca |
11228210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 354 - 419
Target Start/End: Complemental strand, 3064316 - 3064251
Alignment:
| Q |
354 |
accaaccatttgattatgttattttacaaaaattgtcaccactcacgggttggtcatctggtacca |
419 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||| ||||| || ||||||| || |||||| |
|
|
| T |
3064316 |
accaaccatttgattatgttactttacaaaaatttccacaactcaaggattggtcacctagtacca |
3064251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 312 - 384
Target Start/End: Original strand, 2688642 - 2688714
Alignment:
| Q |
312 |
tgccgaagaaaccaccagatcgacattatgttacaggtatcgaccaaccatttgattatgttattttacaaaa |
384 |
Q |
| |
|
||||||||||||||| ||||||| | || ||||| |||||||||||||| |||||||||| ||||||||| |
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|
| T |
2688642 |
tgccgaagaaaccactggatcgacgtgttgctacagatatcgaccaaccatacgattatgttactttacaaaa |
2688714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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