View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11818_low_8 (Length: 395)
Name: NF11818_low_8
Description: NF11818
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11818_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 107; Significance: 2e-53; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 216 - 379
Target Start/End: Original strand, 27244488 - 27244639
Alignment:
| Q |
216 |
cgatctttaatcggattatctagagggaagaaaatcagcgaaattttttcatcttatcttgtttggttttctctaacattttcattaatcgtttttgaga |
315 |
Q |
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| T |
27244488 |
cgatctttaatcggattatctagagggaagaagatcaacgaaattttttcatcttatcttgtttggtttt------------cattaatcgttattgaga |
27244575 |
T |
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| Q |
316 |
gtcgtttcccattgttctagtcttttcttcgaaacgtgtacttgtgagcaatcatatttttcgt |
379 |
Q |
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| T |
27244576 |
gtcgtttcccattgttctagtcttttcttcgaaacgtgtacttgtgagcaatcatctttttcgt |
27244639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 29 - 136
Target Start/End: Original strand, 27244299 - 27244407
Alignment:
| Q |
29 |
agagcaaactgg-gtaaatcacatagttttagagcagacatggttcccattcgagtcattttgctatagagtgtacatgggtgatgcaccaagtcaatta |
127 |
Q |
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| T |
27244299 |
agagcaaactggagtaaaccacatgattttagagcggacatggttcccatccgagtcattttactatagagtgtacctaggtgatgcacgaagttaatta |
27244398 |
T |
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| Q |
128 |
tattgagag |
136 |
Q |
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| T |
27244399 |
tattgagag |
27244407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 273 - 362
Target Start/End: Original strand, 27282630 - 27282718
Alignment:
| Q |
273 |
cttgtttggttttctctaacattttcattaatcgtttttgagagtcgtttcccattgttctagtc-ttttcttcgaaacgtgtacttgtga |
362 |
Q |
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| T |
27282630 |
cttgtttgggtttctctaacattttcattattc--ctttgagagtcttttcccattattctagtctttttctttgaaacgtgtacttgtga |
27282718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 33972914 - 33972854
Alignment:
| Q |
18 |
ccaacatcaagagagcaaactgg-gtaaatcacatagttttagagcagacatggttcccat |
77 |
Q |
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| T |
33972914 |
ccaacatcgacagagcaaactagagtaaaccacatggttttagagcggacatggttcccat |
33972854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 14504356 - 14504416
Alignment:
| Q |
18 |
ccaacatcaagagagcaaactgggtaaat-cacatagttttagagcagacatggttcccat |
77 |
Q |
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| T |
14504356 |
ccaacatcaatagagcaaaatggataaaagcacatagttttagagcggacatgattcccat |
14504416 |
T |
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