View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11819_high_20 (Length: 265)

Name: NF11819_high_20
Description: NF11819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11819_high_20
NF11819_high_20
[»] chr1 (2 HSPs)
chr1 (19-257)||(47072633-47072871)
chr1 (66-158)||(22224477-22224568)
[»] chr7 (6 HSPs)
chr7 (25-158)||(4157690-4157823)
chr7 (25-156)||(15583031-15583162)
chr7 (98-158)||(18298971-18299031)
chr7 (72-158)||(10301900-10301984)
chr7 (99-158)||(17345811-17345870)
chr7 (86-158)||(2591736-2591807)
[»] chr8 (3 HSPs)
chr8 (56-158)||(24115327-24115429)
chr8 (40-161)||(24118949-24119070)
chr8 (93-158)||(34240908-34240973)
[»] chr3 (6 HSPs)
chr3 (91-145)||(806072-806126)
chr3 (25-158)||(28426477-28426610)
chr3 (93-158)||(7434708-7434773)
chr3 (93-146)||(32889736-32889789)
chr3 (109-161)||(11509193-11509245)
chr3 (93-158)||(16139713-16139778)
[»] chr4 (4 HSPs)
chr4 (29-158)||(12194838-12194967)
chr4 (73-145)||(9157270-9157342)
chr4 (93-148)||(13869443-13869498)
chr4 (93-158)||(25935303-25935368)
[»] chr5 (3 HSPs)
chr5 (93-158)||(29810266-29810331)
chr5 (104-158)||(27649250-27649304)
chr5 (93-158)||(26067053-26067118)
[»] chr2 (1 HSPs)
chr2 (93-158)||(37185325-37185390)
[»] chr6 (2 HSPs)
chr6 (98-145)||(23107798-23107845)
chr6 (93-158)||(24123076-24123141)


Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 257
Target Start/End: Original strand, 47072633 - 47072871
Alignment:
Q  19 aaagagcacattacttggggtttaagtcatggaaaaccaagtccattgagggttataaatatactttttgaaagcattatcaaggcatcacataaacagt 118  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||| ||||||| ||||||||||| ||||||||||||||||    
T  47072633 aaagagcacattacttagggtttaagtcatggaaaaccaagtccattaaggattataaatatattttttgagagcattatcaaagcatcacataaacagt 47072732  T
Q  119 ttaaaccttaaattctattattgtactcactccaagtacactattgctcgtttttccttcaaattttttgttgacgttaatgacaatttcattagtgata 218  Q
     ||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47072733 ctaaaccttaaattttattattgtactcaatgcaagtacactattgctcgtttttccttcaaattttttgttgacgttaatgacaatttcattagtgata 47072832  T
Q  219 aatacattttgaggttccagcttaattcagattcttctc 257  Q
    || |||||||||||||||||| |||||||||||||||||    
T  47072833 aagacattttgaggttccagcataattcagattcttctc 47072871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 158
Target Start/End: Complemental strand, 22224568 - 22224477
Alignment:
Q  66 gagggttataaatatactttttgaaagcattatcaaggcatcacataaacagtttaaaccttaaattctattattgtactcactccaagtaca 158  Q
    ||||| |||||||| || | |||| |||||| |||||||||| || ||||||| ||| ||| | |||||||||||||||||||  ||||||||    
T  22224568 gagggctataaatacacctcttgagagcattctcaaggcatctcaaaaacagtataaccct-agattctattattgtactcaccgcaagtaca 22224477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 25 - 158
Target Start/End: Complemental strand, 4157823 - 4157690
Alignment:
Q  25 cacattacttggggtttaagtcatggaaaaccaagtccattgagggttataaatatactttttgaaagcattatcaaggcatcacataaacagtttaaac 124  Q
    |||||||||||||||||   ||| ||||||||||| |||  ||||| |||||||| || | |||| |||||| ||||||||||||||||||| | |||||    
T  4157823 cacattacttggggttttcatcacggaaaaccaagcccacggagggctataaatacacctcttgagagcattctcaaggcatcacataaacaatctaaac 4157724  T
Q  125 cttaaattctattattgtactcactccaagtaca 158  Q
    ||||||||||||||||||||||||| ||||||||    
T  4157723 cttaaattctattattgtactcactgcaagtaca 4157690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 156
Target Start/End: Original strand, 15583031 - 15583162
Alignment:
Q  25 cacattacttggggtttaagtcatggaaaaccaagtccattgagggttataaatatactttttgaaagcattatcaaggcatcacataaacagtttaaac 124  Q
    |||||||||||||| |||||||| | |||| |||| |||  ||||   ||||||| || | || | || ||| ||||| ||||||||||||||| ||||     
T  15583031 cacattacttggggcttaagtcacgaaaaatcaagcccacggaggacaataaatacacctcttaagagaattctcaagccatcacataaacagtctaaag 15583130  T
Q  125 cttaaattctattattgtactcactccaagta 156  Q
    | || |||||| ||||||||||||||||||||    
T  15583131 cctagattctaatattgtactcactccaagta 15583162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 18298971 - 18299031
Alignment:
Q  98 tcaaggcatcacataaacagtttaaaccttaaattctattattgtactcactccaagtaca 158  Q
    |||||||||| |||||| ||| |||||| || |||||||||||||||||| | ||||||||    
T  18298971 tcaaggcatctcataaatagtctaaaccctagattctattattgtactcaatgcaagtaca 18299031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 158
Target Start/End: Complemental strand, 10301984 - 10301900
Alignment:
Q  72 tataaatatactttttgaaagcattatcaaggcatcacataaacagtttaaaccttaaattctattattgtactcactccaagtaca 158  Q
    |||||||| || | |||| |||||| |||||||||| || ||||||| ||| || ||  ||||||||||||||||||| ||||||||    
T  10301984 tataaatacacctcttgagagcattctcaaggcatctcaaaaacagtataacccata--ttctattattgtactcactgcaagtaca 10301900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 99 - 158
Target Start/End: Complemental strand, 17345870 - 17345811
Alignment:
Q  99 caaggcatcacataaacagtttaaaccttaaattctattattgtactcactccaagtaca 158  Q
    ||||||||| |||||||||| |||||| || || | ||||||||||||||| ||||||||    
T  17345870 caaggcatctcataaacagtctaaaccctagatacaattattgtactcactgcaagtaca 17345811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 158
Target Start/End: Complemental strand, 2591807 - 2591736
Alignment:
Q  86 ttgaaagcattatcaaggcatcacataaacagtttaaaccttaaattctattattgtactcactccaagtaca 158  Q
    |||| |||||| |||||||||| || ||||||  ||| ||| | |||||||||||||||||||| ||||||||    
T  2591807 ttgagagcattgtcaaggcatctcaaaaacagaataaccct-agattctattattgtactcactgcaagtaca 2591736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 56 - 158
Target Start/End: Original strand, 24115327 - 24115429
Alignment:
Q  56 caagtccattgagggttataaatatactttttgaaagcattatcaaggcatcacataaacagtttaaaccttaaattctattattgtactcactccaagt 155  Q
    |||| |||| ||||| |||||||| || | || | ||||||||||||||||| |||||||||| |||||| || |||||| ||||||||||||| |||||    
T  24115327 caagaccatagagggctataaatacacctcttaagagcattatcaaggcatctcataaacagtctaaaccctagattctactattgtactcactgcaagt 24115426  T
Q  156 aca 158  Q
    |||    
T  24115427 aca 24115429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 40 - 161
Target Start/End: Original strand, 24118949 - 24119070
Alignment:
Q  40 ttaagtcatggaaaaccaagtccattgagggttataaatatactttttgaaagcattatcaaggcatcacataaacagtttaaaccttaaattctattat 139  Q
    ||||||||||  ||| |||| |||| ||||| |||||||| || | |||| |||||| |||||||||| |||||| ||| |||||| || |||||| |||    
T  24118949 ttaagtcatgagaaaacaagcccatagagggctataaatacacctcttgagagcattctcaaggcatctcataaatagtctaaaccctagattctactat 24119048  T
Q  140 tgtactcactccaagtacacta 161  Q
    || ||||||| |||||||||||    
T  24119049 tgcactcactgcaagtacacta 24119070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 93 - 158
Target Start/End: Original strand, 34240908 - 34240973
Alignment:
Q  93 cattatcaaggcatcacataaacagtttaaaccttaaattctattattgtactcactccaagtaca 158  Q
    |||| ||||||||||||| ||||||| |||||| || |||||||||||||||||||| ||||||||    
T  34240908 cattctcaaggcatcacacaaacagtctaaaccctagattctattattgtactcactgcaagtaca 34240973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 145
Target Start/End: Original strand, 806072 - 806126
Alignment:
Q  91 agcattatcaaggcatcacataaacagtttaaaccttaaattctattattgtact 145  Q
    |||||| ||||||||||||||||||||| |||||| || ||||||||||||||||    
T  806072 agcattctcaaggcatcacataaacagtctaaaccctagattctattattgtact 806126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 158
Target Start/End: Original strand, 28426477 - 28426610
Alignment:
Q  25 cacattacttggggtttaagtcatggaaaaccaagtccattgagggttataaatatactttttgaaagcattatcaaggcatcacataaacagtttaaac 124  Q
    ||||||||||||| ||||||||  || |||||||| |||  || |  | |||||| || | |||| |||| | ||||| |||| |||||||||| |||||    
T  28426477 cacattacttgggttttaagtctcgggaaaccaagcccacagatgactgtaaatacacctcttgagagcactctcaagacatctcataaacagtctaaac 28426576  T
Q  125 cttaaattctattattgtactcactccaagtaca 158  Q
    | |||||||||||||| |||||||  ||||||||    
T  28426577 cctaaattctattattatactcaccgcaagtaca 28426610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 158
Target Start/End: Original strand, 7434708 - 7434773
Alignment:
Q  93 cattatcaaggcatcacataaacagtttaaaccttaaattctattattgtactcactccaagtaca 158  Q
    |||| |||||||||||||||||||||  ||||| || |||||||| ||||||||||| ||| ||||    
T  7434708 cattctcaaggcatcacataaacagtcaaaaccctagattctattgttgtactcactacaattaca 7434773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 146
Target Start/End: Original strand, 32889736 - 32889789
Alignment:
Q  93 cattatcaaggcatcacataaacagtttaaaccttaaattctattattgtactc 146  Q
    |||| |||||||||| |||||||||| |||||| || |||||||||||||||||    
T  32889736 cattctcaaggcatcgcataaacagtctaaaccctatattctattattgtactc 32889789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 161
Target Start/End: Complemental strand, 11509245 - 11509193
Alignment:
Q  109 cataaacagtttaaaccttaaattctattattgtactcactccaagtacacta 161  Q
    ||||||||||||||||  || |||||||||||||||||||  |||||||||||    
T  11509245 cataaacagtttaaactctagattctattattgtactcaccgcaagtacacta 11509193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 158
Target Start/End: Complemental strand, 16139778 - 16139713
Alignment:
Q  93 cattatcaaggcatcacataaacagtttaaaccttaaattctattattgtactcactccaagtaca 158  Q
    |||| |||||||||| |||| ||||| |||||| || |||||| ||||||||||||| ||| ||||    
T  16139778 cattctcaaggcatctcatagacagtctaaaccctagattctaatattgtactcactgcaaataca 16139713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 158
Target Start/End: Original strand, 12194838 - 12194967
Alignment:
Q  29 ttacttggggtttaagtcatggaaaaccaagtccattgagggttataaatatactttttgaaagcattatcaaggcatcacataaacagtttaaacctta 128  Q
    |||||||||| ||||| || |  ||| |||| |||  ||||| |||||||| || | |||| |||||| | ||  |||| |||||||||| ||||||| |    
T  12194838 ttacttggggcttaagccacgagaaaacaagcccacagagggctataaatacacctcttgagagcattctaaaaacatctcataaacagtctaaacctaa 12194937  T
Q  129 aattctattattgtactcactccaagtaca 158  Q
     |||||||||||||||||||| ||||||||    
T  12194938 gattctattattgtactcactgcaagtaca 12194967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 145
Target Start/End: Complemental strand, 9157342 - 9157270
Alignment:
Q  73 ataaatatactttttgaaagcattatcaaggcatcacataaacagtttaaaccttaaattctattattgtact 145  Q
    |||||||| | | |||| |||||| ||||| ||||||||||| ||| ||||||||| |||||||| |||||||    
T  9157342 ataaatatccatcttgagagcattctcaagacatcacataaagagtctaaaccttagattctattgttgtact 9157270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 148
Target Start/End: Original strand, 13869443 - 13869498
Alignment:
Q  93 cattatcaaggcatcacataaacagtttaaaccttaaattctattattgtactcac 148  Q
    |||| |||| ||||| |||||||||| |||||| |||||| |||||||||||||||    
T  13869443 cattctcaaagcatctcataaacagtctaaaccctaaattttattattgtactcac 13869498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 158
Target Start/End: Original strand, 25935303 - 25935368
Alignment:
Q  93 cattatcaaggcatcacataaacagtttaaaccttaaattctattattgtactcactccaagtaca 158  Q
    |||| ||||| |||| ||||||| || |||||| || |||||||||||||||||| | ||||||||    
T  25935303 cattctcaagtcatctcataaacggtctaaaccctagattctattattgtactcattgcaagtaca 25935368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 158
Target Start/End: Original strand, 29810266 - 29810331
Alignment:
Q  93 cattatcaaggcatcacataaacagtttaaaccttaaattctattattgtactcactccaagtaca 158  Q
    |||| ||||| ||||||| ||||||| |||||| ||| ||||| ||||||||||||| ||||||||    
T  29810266 cattctcaagacatcacaaaaacagtctaaaccctaatttctaatattgtactcactgcaagtaca 29810331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 27649250 - 27649304
Alignment:
Q  104 catcacataaacagtttaaaccttaaattctattattgtactcactccaagtaca 158  Q
    ||||||||||| ||| |||||| || |||||||||||||| ||||| ||||||||    
T  27649250 catcacataaagagtctaaaccctagattctattattgtattcactgcaagtaca 27649304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 158
Target Start/End: Complemental strand, 26067118 - 26067053
Alignment:
Q  93 cattatcaaggcatcacataaacagtttaaaccttaaattctattattgtactcactccaagtaca 158  Q
    ||||||||||| ||| |||||||||| |||||| || ||| |||||||||| ||||  ||||||||    
T  26067118 cattatcaaggaatctcataaacagtctaaaccatagattatattattgtattcacagcaagtaca 26067053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 158
Target Start/End: Complemental strand, 37185390 - 37185325
Alignment:
Q  93 cattatcaaggcatcacataaacagtttaaaccttaaattctattattgtactcactccaagtaca 158  Q
    |||| |||| ||||| ||||||||||||||||| || |||||||||||||| ||||| ||| ||||    
T  37185390 cattctcaaagcatctcataaacagtttaaaccctagattctattattgtattcactgcaaataca 37185325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 145
Target Start/End: Original strand, 23107798 - 23107845
Alignment:
Q  98 tcaaggcatcacataaacagtttaaaccttaaattctattattgtact 145  Q
    |||| |||||||||||||||| |||||| || ||||||||||||||||    
T  23107798 tcaatgcatcacataaacagtgtaaaccctagattctattattgtact 23107845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 158
Target Start/End: Original strand, 24123076 - 24123141
Alignment:
Q  93 cattatcaaggcatcacataaacagtttaaaccttaaattctattattgtactcactccaagtaca 158  Q
    |||| ||||||||||||| ||| |||  ||||| || |||||| ||||||||||||| ||||||||    
T  24123076 cattctcaaggcatcacaaaaatagtcaaaaccctagattctaatattgtactcactacaagtaca 24123141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University