View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11819_high_5 (Length: 572)
Name: NF11819_high_5
Description: NF11819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11819_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 12 - 550
Target Start/End: Complemental strand, 278757 - 278223
Alignment:
| Q |
12 |
tgagaagaattggactcatcctctgaacaataaccgcttaagttctgatcctgagaaccagtacttgtattctcttcagtgcttatagaagcacacctaa |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
278757 |
tgagaagaattggactcatcctctgaacaataaccgcttaaggtctgatcctgagaaccagtacttgtattctcttcagtgcttatagaagcacacctaa |
278658 |
T |
|
| Q |
112 |
tcatcttcctacatttaacattcctcttgttctttgggacctataatatcaaatgacacggaaaatttcagaaaatcaaaatccaaaccataaaccgtga |
211 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
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| T |
278657 |
tcatcttcctacatttaacattcctcttgttctttgggacctataatatcaaatgacaaggagaatttcagaaaatcaaaatccaaaccataaaccgtgg |
278558 |
T |
|
| Q |
212 |
tggaaaaggaaatgcatatcagttggaaagaagaaataaaaaa---cagtagtaagggaaacatttagaagattcatgggccttctggcttctgtttgtt |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
278557 |
tggaaaaggaaatgcatatcagttggaaagaagaaataaaaaacagcagtagtaagggagacatttagaagattcatgggc-------cttctgtttgtt |
278465 |
T |
|
| Q |
309 |
acctcatttgagctcctagatctttttcctgaattttctttgcttgtggttttatcctcttctggttcagaaactagtatttcacgttccgtttttcggg |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
278464 |
acctcatttgagctcctagatctttttcctgaattttctgtgcttgtggttttatcctcttctggttcagaaactagtatttcacgttccgtttttcggg |
278365 |
T |
|
| Q |
409 |
cctgcaaatttttgctagctagaacttgttcatcagattgtgttgtacatggagtgaatttggaataatctatggaaagacccatggaaatatagtcaaa |
508 |
Q |
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| T |
278364 |
cctgcaaatttttgttagctagaacttgttcatcagattgtgttgtacatggagtgaatttggaataatctatggaaagacccatggaaatatagtcaaa |
278265 |
T |
|
| Q |
509 |
agtggttactggattgttgttgaagcaacttgttgtggggaa |
550 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||| |
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| T |
278264 |
agtggttactggattgttgttgaaacaacttgttgtggggaa |
278223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 1e-30; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 16 - 164
Target Start/End: Original strand, 24653403 - 24653551
Alignment:
| Q |
16 |
aagaattggactcatcctctgaacaataaccgcttaagttctgatcctgagaaccagtacttgtattctcttcagtgcttatagaagcacacctaatcat |
115 |
Q |
| |
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|||||||||| |||| ||||||||| || ||||||| |||||||||||||||||| ||||||||||||| |||||||| |||| |||| || || | |
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| T |
24653403 |
aagaattggattcattatctgaacaacaattgcttaaggtctgatcctgagaaccaggacttgtattctctcaagtgcttacagaaccacatctcatgtt |
24653502 |
T |
|
| Q |
116 |
cttcctacatttaacattcctcttgttctttgggacctataatatcaaa |
164 |
Q |
| |
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||||||||||||||||||||||| |||||| |||||||||| |||||| |
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|
| T |
24653503 |
cttcctacatttaacattcctctctttctttcggacctataaaatcaaa |
24653551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 47 - 165
Target Start/End: Original strand, 24685159 - 24685277
Alignment:
| Q |
47 |
gcttaagttctgatcctgagaaccagtacttgtattctcttcagtgcttatagaagcacacctaatcatcttcctacatttaacattcctcttgttcttt |
146 |
Q |
| |
|
||||||| ||||||| |||||||||| || |||||||||||| ||||||||| || |||| || || ||||| | ||||||||||||||||||||||| |
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| T |
24685159 |
gcttaaggtctgatcttgagaaccaggacctgtattctcttctgtgcttataaaaccacatctcatattcttcatgcatttaacattcctcttgttcttg |
24685258 |
T |
|
| Q |
147 |
gggacctataatatcaaat |
165 |
Q |
| |
|
||||||||||| ||||||| |
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|
| T |
24685259 |
gggacctataaaatcaaat |
24685277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 55 - 164
Target Start/End: Original strand, 24682423 - 24682535
Alignment:
| Q |
55 |
tctgatcctgagaaccagtacttgtattctcttcagtgcttatagaagcacacctaatcatcttcctacatttaac---attcctcttgttctttgggac |
151 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||||| |||| |||| || || |||||||||||||||| |||||||| |||||| |||| |
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| T |
24682423 |
tctgatcctgagaaccagcacttgtattctcttaagtgcttacagaaccacatctcatgttcttcctacatttaacattattcctctctttctttcggac |
24682522 |
T |
|
| Q |
152 |
ctataatatcaaa |
164 |
Q |
| |
|
|||||| |||||| |
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|
| T |
24682523 |
ctataaaatcaaa |
24682535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 295 - 398
Target Start/End: Original strand, 24685374 - 24685478
Alignment:
| Q |
295 |
ggcttctgtttgt-tacctcatttgagctcctagatctttttcctgaattttctttgcttgtggttttatcctcttctggttcagaaactagtatttcac |
393 |
Q |
| |
|
||||| ||||||| ||||||| | |||||||||| ||||||||||||||| ||| ||||| |||||||||| ||| |||| ||||||||||||| ||| |
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| T |
24685374 |
ggcttttgtttgtctacctcagtcgagctcctaggtctttttcctgaattctctctgcttctggttttatcatctcgtggtccagaaactagtatgtcat |
24685473 |
T |
|
| Q |
394 |
gttcc |
398 |
Q |
| |
|
||||| |
|
|
| T |
24685474 |
gttcc |
24685478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 48 - 247
Target Start/End: Original strand, 24631760 - 24631957
Alignment:
| Q |
48 |
cttaagttctgatcctgagaaccagtacttgtattctcttcagtgcttatagaagcacacctaatcatcttcctacatttaacattcctcttgttctttg |
147 |
Q |
| |
|
|||||| |||||||| | ||||||| ||||||||| |||| ||| |||||||| || | || || ||||| ||||||||| |||||||||||||||| |
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| T |
24631760 |
cttaaggtctgatccggcgaaccaggacttgtattttcttttgtgattatagaaccaaatctcatattcttcatacatttaa--ttcctcttgttctttg |
24631857 |
T |
|
| Q |
148 |
ggacctataatatcaaatgacacggaaaatttcagaaaatcaaaatccaaaccataaaccgtgatggaaaaggaaatgcatatcagttggaa-agaagaa |
246 |
Q |
| |
|
|||| |||| ||||||| || ||| ||| ||| |||||| ||| || |||||||| ||| ||||||| ||||| ||||||| |||||| ||||||| |
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| T |
24631858 |
ggactaataaaatcaaataaccgggataatctcacaaaatcgaaa-acagaccataaattgtgttggaaaaagaaatccatatcacttggaagagaagaa |
24631956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 3e-28; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 308 - 474
Target Start/End: Original strand, 41800197 - 41800363
Alignment:
| Q |
308 |
tacctcatttgagctcctagatctttt-tcctgaattttctttgcttgtggttttatcctcttctggttcagaaactagtatttcacgttccgtttttcg |
406 |
Q |
| |
|
|||||| |||||||||||| ||||||| ||||||||||||| ||||| | |||||||| |||||| |||||||||||||||||||||||||| ||| | |
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| T |
41800197 |
tacctcgtttgagctcctacatcttttttcctgaattttctgtgcttcttgttttatcttcttctagttcagaaactagtatttcacgttcc---ttttg |
41800293 |
T |
|
| Q |
407 |
ggcctgcaaatttttgctagctagaacttg--ttcatcagattgtgttgtacatggagtgaatttggaat |
474 |
Q |
| |
|
|||||||||||| ||| |||||||||||| || || | || |||||| |||||||||||||||||| |
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|
| T |
41800294 |
ggcctgcaaattcttggcagctagaacttgctctcgtcgggttcggttgtatatggagtgaatttggaat |
41800363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 56 - 228
Target Start/End: Original strand, 41806086 - 41806256
Alignment:
| Q |
56 |
ctgatcctgagaaccagtacttgtattctcttcagtgcttatagaagcacacctaatcatcttcctacatttaacattcctcttgttctttgggacctat |
155 |
Q |
| |
|
||||| ||||||||||| || ||||||||||||||||||||||||||| | || | |||| ||||| |||||||| ||||||||| ||||||||| |
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|
| T |
41806086 |
ctgatgctgagaaccaggacgtgtattctcttcagtgcttatagaagcccgtcttacattctttctacagttaacatt-ctcttgttccgcgggacctat |
41806184 |
T |
|
| Q |
156 |
aatatcaaatgacacggaaaatttcagaaaatcaaaatccaaaccataaaccgtgatggaaaaggaaatgcat |
228 |
Q |
| |
|
|| ||||||| ||| ||| ||| ||| |||||| ||| |||||||||||| || |||||||||||||||| |
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|
| T |
41806185 |
aaaatcaaataacaaggagaatctcacaaaatc-aaacacaaaccataaactttgcaggaaaaggaaatgcat |
41806256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 55 - 106
Target Start/End: Original strand, 41799980 - 41800031
Alignment:
| Q |
55 |
tctgatcctgagaaccagtacttgtattctcttcagtgcttatagaagcaca |
106 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
41799980 |
tctgatcctgagaaccaggacttgtattttcttcagtgcttatagaagcaca |
41800031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 232
Target Start/End: Original strand, 41800036 - 41800138
Alignment:
| Q |
129 |
acattcctcttgttctttgggacctataatatcaaatgacacggaaaatttcagaaaatcaaaatccaaaccataaaccgtgatggaaaaggaaatgcat |
228 |
Q |
| |
|
||||||| ||||||||| ||||||||||| ||||||| || ||| ||| | | |||||| ||| |||||||||||| ||| ||||||||||||||| |
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|
| T |
41800036 |
acattccccttgttcttcgggacctataaaatcaaataaccaggagaatctaacaaaatc-aaacacaaaccataaactgtgcaggaaaaggaaatgcac |
41800134 |
T |
|
| Q |
229 |
atca |
232 |
Q |
| |
|
|||| |
|
|
| T |
41800135 |
atca |
41800138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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