View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11819_low_1 (Length: 828)

Name: NF11819_low_1
Description: NF11819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11819_low_1
NF11819_low_1
[»] chr6 (18 HSPs)
chr6 (17-463)||(2553329-2553775)
chr6 (17-306)||(24767426-24767715)
chr6 (17-306)||(18651236-18651525)
chr6 (40-306)||(12733974-12734240)
chr6 (17-159)||(21168194-21168337)
chr6 (184-306)||(21168074-21168196)
chr6 (50-233)||(14373026-14373209)
chr6 (48-232)||(15958846-15959030)
chr6 (48-298)||(17579114-17579364)
chr6 (48-298)||(20883066-20883316)
chr6 (213-306)||(5734439-5734532)
chr6 (48-298)||(17573688-17573938)
chr6 (48-298)||(21630140-21630392)
chr6 (48-298)||(17606367-17606617)
chr6 (48-130)||(10577282-10577364)
chr6 (189-298)||(11462270-11462378)
chr6 (404-437)||(6940575-6940608)
chr6 (38-147)||(13937708-13937817)
[»] chr3 (23 HSPs)
chr3 (17-306)||(34332817-34333106)
chr3 (17-306)||(40930530-40930819)
chr3 (17-306)||(2364126-2364415)
chr3 (17-302)||(19920231-19920516)
chr3 (17-306)||(7312626-7312914)
chr3 (17-306)||(10323573-10323862)
chr3 (48-268)||(26771022-26771242)
chr3 (47-306)||(7032167-7032426)
chr3 (48-298)||(35214404-35214654)
chr3 (48-130)||(29523778-29523860)
chr3 (53-298)||(7031055-7031300)
chr3 (48-130)||(11203844-11203926)
chr3 (49-130)||(33496572-33496653)
chr3 (48-130)||(12342259-12342340)
chr3 (33-154)||(17097894-17098015)
chr3 (24-148)||(16178955-16179079)
chr3 (180-298)||(36801240-36801358)
chr3 (201-298)||(33496404-33496501)
chr3 (38-174)||(2755823-2755959)
chr3 (48-100)||(19890733-19890785)
chr3 (34-109)||(15312629-15312704)
chr3 (48-130)||(36801108-36801190)
chr3 (38-147)||(963186-963295)
[»] chr8 (21 HSPs)
chr8 (17-306)||(13396237-13396526)
chr8 (21-304)||(32266415-32266698)
chr8 (17-306)||(41665371-41665660)
chr8 (17-306)||(9922450-9922739)
chr8 (17-306)||(7924235-7924524)
chr8 (17-306)||(171952-172241)
chr8 (17-306)||(8299652-8299941)
chr8 (48-274)||(13200004-13200230)
chr8 (48-298)||(43270307-43270557)
chr8 (187-306)||(20496933-20497052)
chr8 (48-298)||(20824153-20824403)
chr8 (48-298)||(2170197-2170449)
chr8 (63-232)||(34137011-34137180)
chr8 (48-298)||(5181527-5181777)
chr8 (48-298)||(37433989-37434239)
chr8 (230-304)||(32567480-32567554)
chr8 (83-232)||(2529809-2529958)
chr8 (48-130)||(17699507-17699589)
chr8 (50-233)||(13879522-13879705)
chr8 (180-298)||(17699339-17699457)
chr8 (409-443)||(26087797-26087831)
[»] chr7 (12 HSPs)
chr7 (17-306)||(11277254-11277543)
chr7 (17-306)||(47876832-47877121)
chr7 (17-306)||(37919393-37919682)
chr7 (17-304)||(29967826-29968113)
chr7 (17-303)||(235439-235727)
chr7 (17-306)||(17720484-17720773)
chr7 (17-306)||(4938130-4938419)
chr7 (137-306)||(31177427-31177596)
chr7 (48-274)||(25619340-25619566)
chr7 (48-274)||(37254639-37254865)
chr7 (48-130)||(18532653-18532735)
chr7 (213-298)||(18530367-18530452)
[»] chr5 (26 HSPs)
chr5 (18-304)||(23238234-23238521)
chr5 (33-304)||(8227877-8228148)
chr5 (17-306)||(28535677-28535966)
chr5 (17-306)||(35983793-35984082)
chr5 (17-306)||(42927980-42928269)
chr5 (17-306)||(12825048-12825337)
chr5 (17-306)||(27117163-27117452)
chr5 (17-306)||(30732316-30732605)
chr5 (17-306)||(42513569-42513858)
chr5 (48-306)||(19255155-19255414)
chr5 (101-306)||(12820035-12820240)
chr5 (17-154)||(31641513-31641649)
chr5 (187-306)||(3418632-3418751)
chr5 (48-298)||(25857457-25857707)
chr5 (48-298)||(8300215-8300465)
chr5 (48-134)||(27767063-27767149)
chr5 (48-250)||(33385407-33385609)
chr5 (49-250)||(10776669-10776870)
chr5 (255-306)||(25824860-25824911)
chr5 (50-233)||(27795405-27795588)
chr5 (48-274)||(18359125-18359350)
chr5 (39-233)||(27165976-27166170)
chr5 (17-149)||(26072898-26073030)
chr5 (52-130)||(18089798-18089876)
chr5 (409-447)||(4064236-4064274)
chr5 (38-147)||(33169666-33169775)
[»] chr4 (21 HSPs)
chr4 (17-306)||(15740070-15740359)
chr4 (17-302)||(1828542-1828827)
chr4 (17-306)||(19755111-19755405)
chr4 (17-306)||(19784401-19784695)
chr4 (17-306)||(47685897-47686186)
chr4 (17-306)||(7403762-7404051)
chr4 (17-306)||(23642593-23642882)
chr4 (17-306)||(13270893-13271182)
chr4 (17-306)||(47418654-47418942)
chr4 (48-298)||(12697670-12697920)
chr4 (187-306)||(159863-159982)
chr4 (48-146)||(55725719-55725817)
chr4 (48-274)||(20002599-20002832)
chr4 (48-130)||(45472742-45472824)
chr4 (50-232)||(11587233-11587415)
chr4 (48-298)||(8360957-8361207)
chr4 (236-306)||(20788501-20788571)
chr4 (54-148)||(5790131-5790225)
chr4 (48-130)||(2822070-2822152)
chr4 (409-447)||(55052128-55052166)
chr4 (201-298)||(4548405-4548502)
[»] scaffold0472 (1 HSPs)
scaffold0472 (17-298)||(3109-3390)
[»] chr1 (12 HSPs)
chr1 (17-306)||(51052329-51052618)
chr1 (17-306)||(11909107-11909396)
chr1 (17-306)||(35540898-35541187)
chr1 (17-306)||(6050452-6050741)
chr1 (214-306)||(6259666-6259758)
chr1 (220-306)||(4842253-4842339)
chr1 (49-232)||(47623111-47623292)
chr1 (48-274)||(37191243-37191469)
chr1 (48-144)||(16917842-16917938)
chr1 (48-298)||(43388224-43388474)
chr1 (189-298)||(16917983-16918092)
chr1 (48-93)||(28351776-28351821)
[»] scaffold0369 (1 HSPs)
scaffold0369 (17-306)||(11207-11496)
[»] chr2 (10 HSPs)
chr2 (17-306)||(4552018-4552307)
chr2 (48-298)||(41206873-41207123)
chr2 (48-298)||(15917511-15917761)
chr2 (48-297)||(12645394-12645643)
chr2 (48-232)||(17764995-17765179)
chr2 (50-233)||(28252642-28252825)
chr2 (50-298)||(14439610-14439857)
chr2 (48-298)||(10999984-11000233)
chr2 (48-228)||(38604407-38604587)
chr2 (409-454)||(11457585-11457630)
[»] scaffold0034 (1 HSPs)
scaffold0034 (17-306)||(105845-106134)
[»] scaffold0524 (1 HSPs)
scaffold0524 (319-442)||(6432-6554)


Alignment Details
Target: chr6 (Bit Score: 394; Significance: 0; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 17 - 463
Target Start/End: Complemental strand, 2553775 - 2553329
Alignment:
Q  17 gacatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2553775 gacatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaa 2553676  T
Q  117 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2553675 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatc 2553576  T
Q  217 atttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctcaatcaactttttgctttta 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  2553575 atttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtgataggggtcgattctcaatcaactttttgctttta 2553476  T
Q  317 aactacgaagctgtcctgattatgtaatccgaaaactattgggaatttccggattttgttttccaaagggctattttgtannnnnnngcagagcgcgtga 416  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||       ||||  || ||||    
T  2553475 aactacgaagctgtccggattatgtaatccaaaaactattgggaatttcctgattttgttttccaaaaggctattttgtatttttctgcaggtcgtgtga 2553376  T
Q  417 gaagggcatagggtgggaaaaataatagtcataaattacttggccta 463  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  2553375 gaagggcatagggtgggaaaaataatagtcataaattacttggccta 2553329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 306
Target Start/End: Original strand, 24767426 - 24767715
Alignment:
Q  17 gacatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaa 116  Q
    ||||||||| ||||||||| ||||||| || |||||||||||||||| |||||||||||||||| ||||||| |||||||||||||| |||||| | |      
T  24767426 gacatcacaggagcagccctagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttgacgacttcttagg 24767525  T
Q  117 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatc 216  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||| || |||||||||||||||||||||     
T  24767526 gatcggttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggaacgttgaagatgttaata 24767625  T
Q  217 atttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctcaatcaactt 306  Q
    |||||||||||||||||  |||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||    
T  24767626 atttgtttttgtcttgtccaacttttagtgccttatgaccattggtgcgggcatggctcggagtggtaggggtcgactctcaatcaactt 24767715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 17 - 306
Target Start/End: Original strand, 18651236 - 18651525
Alignment:
Q  17 gacatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaa 116  Q
    ||||||||| ||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||      
T  18651236 gacatcacaggagcagccccagttagatcaaaatatggagttaatttggcataaacaggttcctctcaaagtctctatccttgcttggcgacttctgagg 18651335  T
Q  117 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatc 216  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||| ||||||||| |||||||| |||| |||||||||||| ||||    
T  18651336 gatcggttacctacaaaaaataatttggaaaaccgtgggattttacctttggatgcgcggttgtgtgtctctggatgcgggaccgttgaagatgtcaatc 18651435  T
Q  217 atttgtt-tttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctcaatcaactt 306  Q
    | ||||| |||||  |||  ||||||||| || ||||  ||| ||||||| ||||||||||||||||| |||||||| |||||||||||||    
T  18651436 acttgttctttgt-gtgtccaacttttagcgccttattgccattggtgcgagcatggctaggagtggtcggggtcgactctcaatcaactt 18651525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 40 - 306
Target Start/End: Complemental strand, 12734240 - 12733974
Alignment:
Q  40 tacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctacaaaaaataa 139  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||  |||    
T  12734240 tacatcataatatggatttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaa 12734141  T
Q  140 tttggcaaaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaact 239  Q
    ||||| || |||||||||| || || |||||| || ||| ||||||||| |||||||||| || |||||||||  |||||||||||||||||||| ||||    
T  12734140 tttggtaacccgtggcattctatctctggaggagcggttatgtgtttctagatgtgggaatgtcgaagatgtttctcatttgtttttgtcttgtgcaact 12734041  T
Q  240 tttagtgcattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctcaatcaactt 306  Q
    ||| | |||||||| || ||||||| ||  ||| ||||||||||||||||||| |||||||||||||    
T  12734040 tttggagcattatggccgatggtgcaggattggttaggagtggtaggggtcgactctcaatcaactt 12733974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 17 - 159
Target Start/End: Complemental strand, 21168337 - 21168194
Alignment:
Q  17 gacatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaa 116  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||| ||    
T  21168337 gacatcacaggagcagccccagttacaccataatatggagttaatttggcataaataggttcctctcaaagtatctatcctagcttggagacttttgcaa 21168238  T
Q  117 gatcggttacctacaa-aaaataatttggcaaaccgtggcattt 159  Q
    ||||| |||||||||| |||| || |||||||||||||||||||    
T  21168237 gatcgattacctacaaaaaaaaaaattggcaaaccgtggcattt 21168194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 184 - 306
Target Start/End: Complemental strand, 21168196 - 21168074
Alignment:
Q  184 tttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggt 283  Q
    ||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||| |||| ||||| ||| || |||| |||||||||||||||||    
T  21168196 tttctgggtgtgggaatgttgaagatgttaatcatatgtttttgtcttgtgtaacttttggtgctttatggccattgatgcgagcatggctaggagtggt 21168097  T
Q  284 aggggtcgattctcaatcaactt 306  Q
     ||||||||||||||||||||||    
T  21168096 gggggtcgattctcaatcaactt 21168074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 50 - 233
Target Start/End: Original strand, 14373026 - 14373209
Alignment:
Q  50 tatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcgg-ttacctacaaaaaataatttggcaaa 148  Q
    |||||| |||||||||||||||||||| ||||| ||||||||||| ||||||||||  |||||||  || ||| |||||||| |||   |||||||||||    
T  14373026 tatggatttaatttggcataaacaggtacctctaaaagtatctattcttgcttggcagcttttgag-gaacggcttacctacgaaaggaaatttggcaaa 14373124  T
Q  149 ccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgt 233  Q
    |||||||||| |  || |||||| || |||||||||||| || | |||| | | ||||||||| |||||||||||||||||||||    
T  14373125 ccgtggcattatttctatggaggggcggttgtgtgtttccggttatgggcatgatgaagatgtaaatcatttgtttttgtcttgt 14373209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 48 - 232
Target Start/End: Original strand, 15958846 - 15959030
Alignment:
Q  48 aatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctacaaaaaataatttggcaa 147  Q
    |||||| ||||||| |||||||||||||||||||| ||||| ||||| ||||||||||| |||||||  ||||  |||||||| |||   ||||||||||    
T  15958846 aatatgaagttaatatggcataaacaggttcctcttaaagtctctattcttgcttggcggcttttgagggatcatttacctacgaaagcaaatttggcaa 15958945  T
Q  148 accgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttg 232  Q
    ||| ||| ||  | |||||||||| ||||||||||||  |||  |||||| |||| |||||||| ||||| |||||||| |||||    
T  15958946 accatggtatcattcctttggaggtgcagttgtgtgtcactgattgtgggcacgtggaagatgtgaatcacttgtttttatcttg 15959030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 48 - 298
Target Start/End: Original strand, 17579114 - 17579364
Alignment:
Q  48 aatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctacaaaaaataatttggcaa 147  Q
    ||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||| ||||  ||||| |||||||| |||  ||||||||       
T  17579114 aatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagggatcgcttacctactaaatctaatttggtgg 17579213  T
Q  148 accgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgc 247  Q
      || || ||| || || ||||    | ||| |||||  | ||||||||| | ||||||||||| |||||||| ||||||||||||   |||||| ||||    
T  17579214 cacgagggattatagctgtggaaaaccggttttgtgtaacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgc 17579313  T
Q  248 attatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctca 298  Q
     || || ||  |||||||||| ||||| || || | |||||||||||||||    
T  17579314 cttgtggcctctggtgcgggcttggcttggtgtcgaaggggtcgattctca 17579364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 48 - 298
Target Start/End: Original strand, 20883066 - 20883316
Alignment:
Q  48 aatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctacaaaaaataatttggcaa 147  Q
    |||||||||||||| ||||||||| |||||||| | ||||| ||||||||||||||||| || ||||  ||| | |||||||| |||   || |||| |     
T  20883066 aatatggagttaatctggcataaataggttcctttaaaagtttctatccttgcttggcggctgttgagggattgtttacctactaaatcgaacttggtag 20883165  T
Q  148 accgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgc 247  Q
    | ||||||||| || || ||||||| | ||| |||||  | ||||||||| | ||||||||| | |||||| ||||||||||||||  || |||  ||||    
T  20883166 atcgtggcattatatctgtggaggctcggttttgtgtcacgggatgtgggcatgttgaagatatgaatcatatgtttttgtcttgtccaattttcggtgc 20883265  T
Q  248 attatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctca 298  Q
    ||| || || ||||||||| ||||||| || || | |||||| ||||||||    
T  20883266 attgtggcctatggtgcggacatggcttggtgtcgaaggggtagattctca 20883316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 213 - 306
Target Start/End: Original strand, 5734439 - 5734532
Alignment:
Q  213 aatcatttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctcaatcaactt 306  Q
    ||||||||||||||||||||||||||||||||||| |||||| || ||||||| |||||||| ||||||||| |||| || |||||||||||||    
T  5734439 aatcatttgtttttgtcttgtgtaacttttagtgctttatgatcattggtgcgagcatggcttggagtggtaagggttgactctcaatcaactt 5734532  T

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Target: chr6; HSP #12
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 48 - 298
Target Start/End: Original strand, 17573688 - 17573938
Alignment:
Q  48 aatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctacaaaaaataatttggcaa 147  Q
    ||||||||||||||||||||||||||||||||| | ||||  |||||||||||||||||||| ||||  ||||| |||||||| |||  ||||||||       
T  17573688 aatatggagttaatttggcataaacaggttcctttaaaagattctatccttgcttggcgactgttgagggatcgcttacctactaaatctaatttggtgg 17573787  T
Q  148 accgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgc 247  Q
      || || ||| || || ||||    | ||| |||||  | ||||||||| | ||||||||||| |||||||| ||||||||||||   |||||| ||||    
T  17573788 cacgagggattatagctgtggaaaaccggttttgtgtaacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgc 17573887  T
Q  248 attatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctca 298  Q
     || || ||  |||||||||| ||||| || || | |||||||||||||||    
T  17573888 cttgtggcctctggtgcgggcttggcttggtgtcgaaggggtcgattctca 17573938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 48 - 298
Target Start/End: Original strand, 21630140 - 21630392
Alignment:
Q  48 aatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctacaaaa--aataatttggc 145  Q
    ||||||||||||||||||||||| ||||||||| | ||||| |||||||||| ||||||||| ||||  ||||| ||||||||||||  || |||||||     
T  21630140 aatatggagttaatttggcataaccaggttcctttaaaagtttctatccttgtttggcgactattgagggatcgtttacctacaaaatcaaaaatttggt 21630239  T
Q  146 aaaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagt 245  Q
      | ||||| ||| || || ||||    | ||| |||||  | ||||| ||| | ||||||||||| |||||||| ||||||||||||  || |||| ||    
T  21630240 ggaacgtgggattatatctgtggaaaatcggttttgtgtaacgggatgcgggcaggttgaagatgtgaatcatttatttttgtcttgtccaatttttggt 21630339  T
Q  246 gcattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctca 298  Q
    || || || ||  |||||||||| ||||| || || | |||||||||||||||    
T  21630340 gctttgtggcctttggtgcgggcttggcttggtgtcgaaggggtcgattctca 21630392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 48 - 298
Target Start/End: Original strand, 17606367 - 17606617
Alignment:
Q  48 aatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctacaaaaaataatttggcaa 147  Q
    ||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||| ||||  ||||  |||||||| |||   |||||||       
T  17606367 aatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagggatcatttacctactaaatcaaatttggtgg 17606466  T
Q  148 accgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgc 247  Q
    | ||||| ||| || || ||||    |  || |||||  | ||||  ||| | ||||||||||| |||||||| ||||||||||||  || |||| ||||    
T  17606467 aacgtggaattatagctgtggaaaatcgattttgtgtaacgggatacgggcaggttgaagatgtgaatcatttatttttgtcttgtccaatttttggtgc 17606566  T
Q  248 attatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctca 298  Q
    ||| ||  |  |||||||||| ||||| || || | |||||||||||||||    
T  17606567 attgtggtctttggtgcgggcttggcttggtgtcgaaggggtcgattctca 17606617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 10577282 - 10577364
Alignment:
Q  48 aatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctac 130  Q
    ||||| ||||||||||||||||||||||||||| | ||||| | |||||||||||||||||| ||||  ||||| ||||||||    
T  10577282 aatatagagttaatttggcataaacaggttcctttaaaagtttatatccttgcttggcgactgttgagggatcgtttacctac 10577364  T

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Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 189 - 298
Target Start/End: Complemental strand, 11462378 - 11462270
Alignment:
Q  189 ggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtagggg 288  Q
    ||||||||| | ||||||||||| |||||| ||||||||||||||  || |||  ||||||| || || ||||||||||||||||| || || | |||||    
T  11462378 ggatgtgggcatgttgaagatgtgaatcatatgtttttgtcttgtccaattttcggtgcattgtg-cctatggtgcgggcatggcttggtgtcgaagggg 11462280  T
Q  289 tcgattctca 298  Q
    | ||||||||    
T  11462279 tagattctca 11462270  T

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Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 404 - 437
Target Start/End: Complemental strand, 6940608 - 6940575
Alignment:
Q  404 gcagagcgcgtgagaagggcatagggtgggaaaa 437  Q
    |||| |||||||||||||||||||||||||||||    
T  6940608 gcagtgcgcgtgagaagggcatagggtgggaaaa 6940575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 147
Target Start/End: Complemental strand, 13937817 - 13937708
Alignment:
Q  38 gttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctacaaaaaat 137  Q
    |||||| || ||||||||||| |||||||| |||||||| ||| | ||||| |||||  ||||||||||  |  |||  || ||||||||||| ||| |     
T  13937817 gttacatcaaaatatggagttgatttggcacaaacaggtgcctttgaaagtgtctatttttgcttggcgtttgctgagggaccggttacctactaaacaa 13937718  T
Q  138 aatttggcaa 147  Q
    ||||||||||    
T  13937717 aatttggcaa 13937708  T

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Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 17 - 306
Target Start/End: Original strand, 34332817 - 34333106
Alignment:
Q  17 gacatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaa 116  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |    
T  34332817 gacatcacaggagcagccccagttacatcataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcaacttctgaga 34332916  T
Q  117 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatc 216  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  34332917 gatcgattacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaagatgttaatc 34333016  T
Q  217 atttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctcaatcaactt 306  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  34333017 atttgtttttgtcttgtgtaacttttagtgcattatggccaatggtgcgggcatggctaggagtggtaggggtcgactctcaatcaactt 34333106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 17 - 306
Target Start/End: Original strand, 40930530 - 40930819
Alignment:
Q  17 gacatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaa 116  Q
    ||||||||| ||||| || ||||| || || || ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||      
T  40930530 gacatcacaggagcaacctcagttgcatcaaaacatggagttagtttgacataaacaggttcctctcaaagtatctatccttgcttggcgacttttgagg 40930629  T
Q  117 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatc 216  Q
    ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||| |||||||| ||||    
T  40930630 gattggttacctacaaaaaataatttggcaaaccgtggccttttacctttggaggcgcggttgtgtgtttctggttgtgggaacgtcgaagatgtcaatc 40930729  T
Q  217 atttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctcaatcaactt 306  Q
    |||||||||||||||||  |||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  40930730 atttgtttttgtcttgttcaacttttagtgccttatggccaatggtgcgggcatggcttggagtggtaggggtcgactctcaatcaactt 40930819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 17 - 306
Target Start/End: Complemental strand, 2364415 - 2364126
Alignment:
Q  17 gacatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaa 116  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||      
T  2364415 gacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgactactgagg 2364316  T
Q  117 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatc 216  Q
    ||||||||||||||||||  |||||||||||| ||||||||| || || |||||| || ||| || ||| ||||||||||||  || |||||||||| ||    
T  2364315 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgcgttgctggatgtgggattgtcgaagatgttactc 2364216  T
Q  217 atttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctcaatcaactt 306  Q
    |||||||||||||||||| ||||||| |||||||||| || |||||||||   ||| ||||||||||||| ||||| |||||||||||||    
T  2364215 atttgtttttgtcttgtgcaacttttggtgcattatggccgatggtgcggcattggttaggagtggtaggtgtcgactctcaatcaactt 2364126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 17 - 302
Target Start/End: Original strand, 19920231 - 19920516
Alignment:
Q  17 gacatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaa 116  Q
    ||||||||| ||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||      
T  19920231 gacatcacaggagaagccccagttacaccatcatatggacttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 19920330  T
Q  117 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatc 216  Q
    ||||||||||||||||||  |||||||| ||| || |||||| || || |||||| || ||| |||||||||||||||||||| || ||||||| |  ||    
T  19920331 gatcggttacctacaaaacttaatttggtaaatcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggaatgtcgaagatgcttctc 19920430  T
Q  217 atttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctcaatca 302  Q
    |||||||||||||||||||||||||| |||||||||| || ||||||||||  ||| |||| |||||||| ||||| |||| ||||    
T  19920431 atttgtttttgtcttgtgtaacttttggtgcattatggccgatggtgcgggattggttaggcgtggtaggtgtcgactctcgatca 19920516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 17 - 306
Target Start/End: Complemental strand, 7312914 - 7312626
Alignment:
Q  17 gacatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaa 116  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||      
T  7312914 gacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtacctctcaaagtatctatccttgcttggcgactaatgagg 7312815  T
Q  117 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatc 216  Q
    ||||||||||||||||||  |||||||||||| ||||||||| |  || |||||| || | | |||||||||||||||||||  || |||||||||  ||    
T  7312814 gatcggttacctacaaaacttaatttggcaaatcgtggcattctgtctgtggaggagcggctttgtgtttctggatgtgggattgtcgaagatgtttctc 7312715  T
Q  217 atttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctcaatcaactt 306  Q
    |||||||||||||||||| ||||||| |||||||| | || ||||||||||  ||| |||| |||||||| ||||| |||| ||||||||    
T  7312714 atttgtttttgtcttgtgcaacttttggtgcattaag-ccgatggtgcgggattggttaggcgtggtaggtgtcgactctcgatcaactt 7312626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 17 - 306
Target Start/End: Original strand, 10323573 - 10323862
Alignment:
Q  17 gacatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaa 116  Q
    ||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||      
T  10323573 gacatcacaggagcagccccagttacaccatagtatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgactactgagg 10323672  T
Q  117 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatc 216  Q
    ||||||||||||||||||  |||||||||||  ||||||||| || ||  ||| | || ||| || ||| ||||||||||||  || |||||||||| ||    
T  10323673 gatcggttacctacaaaacttaatttggcaactcgtggcattctatctggggatgagcggttatgcgttgctggatgtgggattgtcgaagatgttactc 10323772  T
Q  217 atttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctcaatcaactt 306  Q
    |||||||||||||||||| ||||||| |||||||||| || |||||||||   ||| ||||||||||||| ||||| |||||||||||||    
T  10323773 atttgtttttgtcttgtgcaacttttggtgcattatggccgatggtgcggcattggttaggagtggtaggtgtcgactctcaatcaactt 10323862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 48 - 268
Target Start/End: Original strand, 26771022 - 26771242
Alignment:
Q  48 aatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctacaaaaaataatttggcaa 147  Q
    |||||||||||||| ||||||||||||| |||||| ||||| ||||| ||| ||||||| |||||||  ||||| |||||||| |||   ||||||||||    
T  26771022 aatatggagttaatgtggcataaacaggctcctcttaaagtctctattcttacttggcggcttttgagggatcgtttacctacgaaagcaaatttggcaa 26771121  T
Q  148 accgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgc 247  Q
    ||||||| ||  | |||||||||| ||||||||||||  |||| |||||| |||| |||||||| ||||| ||||||||||||||   || |||||||||    
T  26771122 accgtggtatcattcctttggaggtgcagttgtgtgtcactggttgtgggcacgtggaagatgtgaatcacttgtttttgtcttgcccaatttttagtgc 26771221  T
Q  248 attatgaccaatggtgcgggc 268  Q
     ||||| ||| ||||| ||||    
T  26771222 cttatggccattggtgagggc 26771242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 47 - 306
Target Start/End: Complemental strand, 7032426 - 7032167
Alignment:
Q  47 taatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctacaaaaaataatttggca 146  Q
    |||| |||||||  ||||||| |||||||||||||||||| | ||||||||||| ||||||||| |||  |||||||||||||||||||| ||| ||||     
T  7032426 taatttggagttggtttggcacaaacaggttcctctcaaaatttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcg 7032327  T
Q  147 aaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtg 246  Q
    ||  ||||  ||||||||||||| |||| || |||||| || || || |||  ||| |||||||||| ||||||||| |||   ||    ||||| || |    
T  7032326 aattgtggtcttttacctttggatgcgcggtcgtgtgtctcaggttgcggggccgtcgaagatgttactcatttgttcttggtgtgcccgactttcagcg 7032227  T
Q  247 cattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctcaatcaactt 306  Q
    | |||||  |   ||||||||||||||| |||||||| |||||||| |||||||| ||||    
T  7032226 ctttatggtctgcggtgcgggcatggctcggagtggtgggggtcgactctcaatctactt 7032167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 48 - 298
Target Start/End: Original strand, 35214404 - 35214654
Alignment:
Q  48 aatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctacaaaaaataatttggcaa 147  Q
    |||||||||||||| |||||||||||||||||| | ||||| |||||||||| ||||||  | ||||  ||||| || ||||| |||   |||||| ||     
T  35214404 aatatggagttaatctggcataaacaggttcctttaaaagtttctatccttgtttggcggatgttgagggatcgtttgcctactaaatcaaatttgccag 35214503  T
Q  148 accgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgc 247  Q
    | ||||| ||| ||  | |||| || ||||| |||||  | |||||| || | ||||||||||| ||||||||||| |||||||||  || |||| ||||    
T  35214504 aacgtgggattctatatgtggaagctcagttttgtgtaacgggatgttggcatgttgaagatgtgaatcatttgttcttgtcttgtccaatttttggtgc 35214603  T
Q  248 attatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctca 298  Q
    ||| || || ||||||||||||||||| || || | |||||| ||||||||    
T  35214604 attgtggcctatggtgcgggcatggcttggtgtcgaaggggtagattctca 35214654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 29523778 - 29523860
Alignment:
Q  48 aatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctac 130  Q
    ||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||| ||||  ||||| ||||||||    
T  29523778 aatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagggatcgtttacctac 29523860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 53 - 298
Target Start/End: Original strand, 7031055 - 7031300
Alignment:
Q  53 ggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctacaaaaaataatttggcaaaccgt 152  Q
    |||||||||||||||||||||||||||| | ||| | ||||||||||||||||| || ||||  ||||| |||||||| |||  ||||||||     ||     
T  7031055 ggagttaatttggcataaacaggttcctttaaaactttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttggtggcacga 7031154  T
Q  153 ggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgcattat 252  Q
    || |||||| || ||||    | ||| |||||  | ||||||||| | ||||||||||| |||||||| ||||||||||||   |||||| |||| || |    
T  7031155 gggattttagctgtggaaaaccggttttgtgtaacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgt 7031254  T
Q  253 gaccaatggtgcgggcatggctaggagtggtaggggtcgattctca 298  Q
    | ||  |||||||||| ||||| || || | |||||||||||||||    
T  7031255 ggcctctggtgcgggcttggcttggtgtcgaaggggtcgattctca 7031300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 11203926 - 11203844
Alignment:
Q  48 aatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctac 130  Q
    ||||||||||||||||||||||||||||||||| | ||||| ||||| |||||||||||||| ||||  ||||| ||||||||    
T  11203926 aatatggagttaatttggcataaacaggttcctttaaaagtttctatacttgcttggcgactgttgagggatcgtttacctac 11203844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 49 - 130
Target Start/End: Complemental strand, 33496653 - 33496572
Alignment:
Q  49 atatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctac 130  Q
    |||||||||||||||||||||||||||||||| | ||||| |||||| ||||||||||||| ||||  ||||| ||||||||    
T  33496653 atatggagttaatttggcataaacaggttcctttaaaagtttctatcattgcttggcgactgttgagggatcgtttacctac 33496572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 12342259 - 12342340
Alignment:
Q  48 aatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctac 130  Q
    |||||||||||||||||||||||||||||| || | ||||| |||||||||||||||||||| ||||  ||||| ||||||||    
T  12342259 aatatggagttaatttggcataaacaggtt-ctttaaaagtttctatccttgcttggcgactgttgagggatcgtttacctac 12342340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 33 - 154
Target Start/End: Original strand, 17097894 - 17098015
Alignment:
Q  33 ccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctacaa 132  Q
    ||||| ||||| || ||| ||||||||||||||||||||||||    | | ||||| |||||| |||||| |||||| ||||  |||||||||||||| |    
T  17097894 ccccatttacatcaaaatgtggagttaatttggcataaacaggcatatgtgaaagtctctatctttgcttagcgactgttgatggatcggttacctacta 17097993  T
Q  133 aaaataatttggcaaaccgtgg 154  Q
    || | |||||||||||||||||    
T  17097994 aagaaaatttggcaaaccgtgg 17098015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 24 - 148
Target Start/End: Complemental strand, 16179079 - 16178955
Alignment:
Q  24 caagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggt 123  Q
    ||||| |||||||| ||||  || ||| | ||||||||||||||||||||||| ||||| |||||||||||  |||| ||||| ||  |||| |||||      
T  16179079 caagaacagccccatttacgtcaaaatttagagttaatttggcataaacaggtacctcttaaagtatctatttttgcgtggcgcctgatgaaggatcgtc 16178980  T
Q  124 tacctacaaaaaataatttggcaaa 148  Q
    ||||||| ||| | |||||||||||    
T  16178979 tacctactaaagagaatttggcaaa 16178955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 180 - 298
Target Start/End: Original strand, 36801240 - 36801358
Alignment:
Q  180 tgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggag 279  Q
    ||||| || ||||||||| | ||||||||||| |||||||| ||||||||||||  || |||| ||||||| || ||  |||||||||| ||||| || |    
T  36801240 tgtgtatcgggatgtgggcaggttgaagatgtaaatcatttatttttgtcttgtccaatttttggtgcattgtggcctttggtgcgggcttggcttggtg 36801339  T
Q  280 tggtaggggtcgattctca 298  Q
    | | |||||| ||||||||    
T  36801340 tcgaaggggtagattctca 36801358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 298
Target Start/End: Complemental strand, 33496501 - 33496404
Alignment:
Q  201 gttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctca 298  Q
    ||||||||||| |||||||| ||||||||||||  || |||| ||||||| || ||  |||||||||| ||||| || || | |||||| ||||||||    
T  33496501 gttgaagatgtgaatcatttatttttgtcttgtccaatttttggtgcattgtggcctttggtgcgggcttggcttggtgtcgaaggggtagattctca 33496404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 174
Target Start/End: Complemental strand, 2755959 - 2755823
Alignment:
Q  38 gttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctacaaaaaat 137  Q
    |||||| || ||||||||||| |||||||| |||||||| ||| | ||||| |||||  ||||||||||  |  |||  || ||||||||||| ||| |     
T  2755959 gttacatcaaaatatggagttgatttggcacaaacaggtacctttgaaagtgtctatatttgcttggcgtttgctgagggaccggttacctactaaataa 2755860  T
Q  138 aatttggcaaaccgtggcattttacctttggaggcgc 174  Q
    ||||||||||  |||||  | ||| ||||||||||||    
T  2755859 aatttggcaagtcgtggggtcttatctttggaggcgc 2755823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 19890785 - 19890733
Alignment:
Q  48 aatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgc 100  Q
    |||||||||||||| |||||||||||||||||| | ||||| || ||||||||    
T  19890785 aatatggagttaatctggcataaacaggttcctttaaaagtttccatccttgc 19890733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 109
Target Start/End: Complemental strand, 15312704 - 15312629
Alignment:
Q  34 cccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgact 109  Q
    |||| ||||| || ||| ||||||||||||||||||||||||| ||||| ||||| | |||  |||||||| ||||    
T  15312704 cccatttacatcaaaatttggagttaatttggcataaacaggtacctctaaaagtctatatatttgcttggtgact 15312629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 36801108 - 36801190
Alignment:
Q  48 aatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctac 130  Q
    |||||||||||||||| ||||||| |||||||  | ||||| | |||||||||||||| |||  |||  ||||| ||||||||    
T  36801108 aatatggagttaatttagcataaataggttcccttaaaagtttatatccttgcttggcaactgctgagggatcgtttacctac 36801190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 147
Target Start/End: Original strand, 963186 - 963295
Alignment:
Q  38 gttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctacaaaaaat 137  Q
    |||||| || ||||||||||| |||||||| |||||||| ||| | ||||| |||||  ||||||||||  |  |||  || ||||||||||| ||| |     
T  963186 gttacatcaaaatatggagttgatttggcacaaacaggtgcctttgaaagtgtctatttttgcttggcgtttgctgagggaccggttacctactaaacaa 963285  T
Q  138 aatttggcaa 147  Q
    ||||||||||    
T  963286 aatttggcaa 963295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 17 - 306
Target Start/End: Complemental strand, 13396526 - 13396237
Alignment:
Q  17 gacatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaa 116  Q
    ||||||||| ||||||||||| ||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  ||| |    
T  13396526 gacatcacaggagcagccccaattacatcatcatatggagttaatttggcataaacaagttcctctcaaagtatctatccttgcttggcgactcctgaga 13396427  T
Q  117 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatc 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  13396426 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaagatgttaatc 13396327  T
Q  217 atttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctcaatcaactt 306  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  13396326 atttgtttttgtcttgtgtaacttttagtgcattatggccaatggtgcgggcatggctaggagtggtaggggtcgaatctcaatcaactt 13396237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 21 - 304
Target Start/End: Complemental strand, 32266698 - 32266415
Alignment:
Q  21 tcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatc 120  Q
    ||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  32266698 tcacaagagcaaccacagttacaccataatttggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggagacttttgagagatc 32266599  T
Q  121 ggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatcattt 220  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  32266598 ggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaagatgttaatcattt 32266499  T
Q  221 gtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctcaatcaac 304  Q
    |||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||| || ||||||||||| |||||    
T  32266498 gtttttgtcttgtgtaacttttagtgcattgtggccaatggtgcgagcatggctaggagtggtgggagtcgattctcattcaac 32266415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 17 - 306
Target Start/End: Original strand, 41665371 - 41665660
Alignment:
Q  17 gacatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaa 116  Q
    ||||||||| ||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  | | |    
T  41665371 gacatcacaggagcagccccaattacatcatcatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgattcctaaga 41665470  T
Q  117 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatc 216  Q
    |||| ||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  41665471 gatcagttacctacaaaaaataatttggcaaaccatgacattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaagatgttaatc 41665570  T
Q  217 atttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctcaatcaactt 306  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  41665571 atttgtttttgtcttgtgtaacttttagtgcattatggccaatggtgcgggcatggctaggagtggtaggggttgaatctcaatcaactt 41665660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 170; E-Value: 8e-91
Query Start/End: Original strand, 17 - 306
Target Start/End: Complemental strand, 9922739 - 9922450
Alignment:
Q  17 gacatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaa 116  Q
    ||||||||| |||||||| || ||||| || ||  |||||||||||||||||| |||||||||||||||||| ||||||||||| || |||||| |||      
T  9922739 gacatcacaggagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttcctctcaaagtttctatccttgcatgacgacttctgagg 9922640  T
Q  117 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatc 216  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| | ||||||||||||| |||||||| || |||||||| ||||    
T  9922639 gatcggttacctacaaaagataatttggcaaaccgtggcattttacctctggaggcgcggatgtgtgtttctggttgtgggaatgtagaagatgtcaatc 9922540  T
Q  217 atttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctcaatcaactt 306  Q
    |||||||||||||||||| |||||||||||| ||||| ||| ||||||| |||||||| |||||||||||||| || |||||||||||||    
T  9922539 atttgtttttgtcttgtgcaacttttagtgccttatggccattggtgcgagcatggcttggagtggtaggggttgactctcaatcaactt 9922450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 17 - 306
Target Start/End: Complemental strand, 7924524 - 7924235
Alignment:
Q  17 gacatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaa 116  Q
    ||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||  |||      
T  7924524 gacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagg 7924425  T
Q  117 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatc 216  Q
    ||||||||||||||||||  |||||||||||| ||||||||| || || |||||| || ||| || ||| ||||||||||||  || |||||||||| ||    
T  7924424 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgcgttgctggatgtgggattgtcgaagatgttactc 7924325  T
Q  217 atttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctcaatcaactt 306  Q
    |||||||||||||||||| ||||||| |||||||||| || |||||||||   ||| ||||||||||||| ||||| |||||||||||||    
T  7924324 atttgtttttgtcttgtgcaacttttggtgcattatggccgatggtgcggcattggttaggagtggtaggtgtcgactctcaatcaactt 7924235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 17 - 306
Target Start/End: Complemental strand, 172241 - 171952
Alignment:
Q  17 gacatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaa 116  Q
    ||||||||| ||||||  ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||      
T  172241 gacatcacaggagcagaaccagttacaccataaaatggacttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 172142  T
Q  117 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatc 216  Q
    || |||||||| ||||||  |||||||| |||||||| |||| || || |||||| || ||| ||||||||||| ||||| || || |||||||||  ||    
T  172141 gaccggttacccacaaaacttaatttggtaaaccgtgacattctatctatggaggagcggttatgtgtttctggctgtggtaatgtcgaagatgtttctc 172042  T
Q  217 atttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctcaatcaactt 306  Q
    |||||||||||||||||| |||||||   |||||||| || ||||||||||  ||| ||||||||||||||||||| |||||||||||||    
T  172041 atttgtttttgtcttgtgcaacttttgacgcattatggccgatggtgcgggattggttaggagtggtaggggtcgactctcaatcaactt 171952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 17 - 306
Target Start/End: Complemental strand, 8299941 - 8299652
Alignment:
Q  17 gacatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaa 116  Q
    ||||||||| ||| ||||||| |||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||      
T  8299941 gacatcacaggagtagccccaattacaccataatttggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgactactgagg 8299842  T
Q  117 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatc 216  Q
    ||||||||||||||||||  |||||||||||| ||||||||| || || |||||| ||  || |||||| ||||||||||||  || |||||||||| ||    
T  8299841 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcgattatgtgttgctggatgtgggattgtcgaagatgttactc 8299742  T
Q  217 atttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctcaatcaactt 306  Q
    ||||||||||||| |||| ||||||| |||||||||| || |||||||||   ||| ||||||||||||| ||||| |||||||||||||    
T  8299741 atttgtttttgtcctgtgcaacttttggtgcattatggccgatggtgcggcattggttaggagtggtaggtgtcgactctcaatcaactt 8299652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 48 - 274
Target Start/End: Complemental strand, 13200230 - 13200004
Alignment:
Q  48 aatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctacaaaaaataatttggcaa 147  Q
    |||||||||||| |||||||||||||||||||||| ||||| || |||||||||||||  || ||||  ||||| |||||||||||| | |||||||||     
T  13200230 aatatggagttagtttggcataaacaggttcctctaaaagtttcaatccttgcttggcagctattgagggatcgtttacctacaaaatacaatttggcag 13200131  T
Q  148 accgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgc 247  Q
    | ||  | ||| ||||| ||||||| | ||| |||||| |||| |||||| | ||||||||||| | |||| |||||||||||||   || |||| | ||    
T  13200130 agcgcagaattctacctatggaggctcggttttgtgttactgggtgtgggcatgttgaagatgtgactcatatgtttttgtcttgcccaatttttggcgc 13200031  T
Q  248 attatgaccaatggtgcgggcatggct 274  Q
    ||| || || ||||||||||| |||||    
T  13200030 attgtggcctatggtgcgggcttggct 13200004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 48 - 298
Target Start/End: Complemental strand, 43270557 - 43270307
Alignment:
Q  48 aatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctacaaaaaataatttggcaa 147  Q
    ||||||||||| || |||||||||||||||||| | ||||| ||||||||| |||||||||| ||||| ||||| || ||||| ||||  ||||||| |     
T  43270557 aatatggagttcatctggcataaacaggttcctttaaaagtttctatccttacttggcgactgttgaaggatcgtttgcctactaaaacaaatttggtag 43270458  T
Q  148 accgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgc 247  Q
    | ||||  ||| || || |||| || | ||| |||||  | || |||||| | ||||||||||| |||||||||||||||||||||  || |||| ||||    
T  43270457 aacgtgagattctatctgtggaagctcggttttgtgtaacgggttgtgggcaggttgaagatgtgaatcatttgtttttgtcttgtccaatttttggtgc 43270358  T
Q  248 attatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctca 298  Q
    ||| ||  | ||||||||||| ||||| || || | |||||| ||||||||    
T  43270357 attgtggtctatggtgcgggcttggcttggtgtcgaaggggtagattctca 43270307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 187 - 306
Target Start/End: Complemental strand, 20497052 - 20496933
Alignment:
Q  187 ctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtagg 286  Q
    ||||||||||||  || |||||||||| |||||||||||||||||||| ||||||| |||||||||| || |||||||||   ||| |||||||||||||    
T  20497052 ctggatgtgggattgtcgaagatgttactcatttgtttttgtcttgtgcaacttttggtgcattatggccgatggtgcggcattggttaggagtggtagg 20496953  T
Q  287 ggtcgattctcaatcaactt 306  Q
     ||||| |||||||||||||    
T  20496952 tgtcgactctcaatcaactt 20496933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 48 - 298
Target Start/End: Complemental strand, 20824403 - 20824153
Alignment:
Q  48 aatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctacaaaaaataatttggcaa 147  Q
    ||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||| ||||  ||||| |||||||| |||  ||||||||       
T  20824403 aatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagggatcgcttacctactaaatctaatttggtgg 20824304  T
Q  148 accgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgc 247  Q
      || || ||| || || ||||    | ||| |||||  | ||||||||| | ||||||||||| |||||||| ||||||||||||   |||||| ||||    
T  20824303 cacgagggattatagctgtggaaaaccggttttgtgtaacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgc 20824204  T
Q  248 attatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctca 298  Q
     || || ||  |||||||||| ||||| || || | |||||||||||||||    
T  20824203 tttgtggcctctggtgcgggcttggcttggtgtcgaaggggtcgattctca 20824153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 48 - 298
Target Start/End: Complemental strand, 2170449 - 2170197
Alignment:
Q  48 aatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctacaaaaaataatttggcaa 147  Q
    |||||||||||||| |||||||||||||||||| | ||||| |||||||||||||||||||  ||||  ||||| |||||||| |||   ||||||| |     
T  2170449 aatatggagttaatctggcataaacaggttcctttaaaagtttctatccttgcttggcgaccgttgagggatcgtttacctactaaatcaaatttggtag 2170350  T
Q  148 accgtggcattttacctttgg--aggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagt 245  Q
    | ||||| ||| || || |||  |  ||  ||| |||||  | || |||||| | ||||||||||| |||||||||||||||||||||  || |||| ||    
T  2170349 aacgtgggattctatctgtggaaaatcggtgttttgtgtaacggggtgtgggcaggttgaagatgtgaatcatttgtttttgtcttgtccaatttttggt 2170250  T
Q  246 gcattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctca 298  Q
    ||||| || || ||||||||||| ||||| || || | |||||| ||||||||    
T  2170249 gcattgtggcctatggtgcgggcttggcttggtgtcgaaggggtagattctca 2170197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 63 - 232
Target Start/End: Original strand, 34137011 - 34137180
Alignment:
Q  63 tggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctacaaaaaataatttggcaaaccgtggcattttac 162  Q
    |||||||||||||| ||||||||||| ||||| ||||||||||| ||| |||  ||||| |||||||| ||| | |||||||||||||| || ||  | |    
T  34137011 tggcataaacaggtacctctcaaagtctctattcttgcttggcggcttatgatggatcgtttacctacgaaagaaaatttggcaaaccgcggtatcattc 34137110  T
Q  163 ctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttg 232  Q
    || |||||| || |||||||| | |||| ||||||  |||| || |||| ||||| ||||||||||||||    
T  34137111 ctgtggaggggcggttgtgtgctactggttgtgggtgcgttcaaaatgtgaatcacttgtttttgtcttg 34137180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 48 - 298
Target Start/End: Complemental strand, 5181777 - 5181527
Alignment:
Q  48 aatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctacaaaaaataatttggcaa 147  Q
    ||||||||| ||||||||||||||||||| ||||| ||||| | ||| |||| |||||| |   |||  ||||  ||||| |||||| ||||||||  ||    
T  5181777 aatatggagataatttggcataaacaggtgcctctaaaagtctatattcttgtttggcggcggctgagggatcatttaccaacaaaagataatttgataa 5181678  T
Q  148 accgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgc 247  Q
    ||||| |  |  | ||||||||||||| ||||||| |  || |||| ||| | ||||||||||  |||||| |||||||||||||   ||||||| ||||    
T  5181677 accgtcgagtcattcctttggaggcgcggttgtgtatcactagatgcgggcaagttgaagatgagaatcatatgtttttgtcttgcccaacttttggtgc 5181578  T
Q  248 attatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctca 298  Q
     || || ||| |||||  ||||||||| || |||||||||||||| |||||    
T  5181577 cttgtggccattggtgtaggcatggctcggtgtggtaggggtcgactctca 5181527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 48 - 298
Target Start/End: Complemental strand, 37434239 - 37433989
Alignment:
Q  48 aatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctacaaaaaataatttggcaa 147  Q
    |||||||||||||||||||||||||| |||||| | ||||| ||||| |||||||||||||| ||||  ||||| |||||||| |||   |||||||       
T  37434239 aatatggagttaatttggcataaacatgttcctttaaaagtctctattcttgcttggcgactgttgagggatcgtttacctactaaatcaaatttggtgg 37434140  T
Q  148 accgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgc 247  Q
    | ||||| ||| || || ||||    | ||| |||||  | ||||| ||| | ||||||||||| |||||||| ||||||||||||  || |||| ||||    
T  37434139 aacgtgggattatatctgtggaaaatcggttttgtgtaacgggatgcgggcaggttgaagatgtgaatcatttatttttgtcttgtccaatttttggtgc 37434040  T
Q  248 attatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctca 298  Q
    ||| || ||  |||||||||| |||||  | || | |||||||||||||||    
T  37434039 attgtggcctttggtgcgggcttggctttgtgtcgaaggggtcgattctca 37433989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 230 - 304
Target Start/End: Original strand, 32567480 - 32567554
Alignment:
Q  230 ttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctcaatcaac 304  Q
    |||||||||||||||||||||||| ||||||||||  ||||||||||||||||| || ||||||||||| |||||    
T  32567480 ttgtgtaacttttagtgcattatggccaatggtgccagcatggctaggagtggtgggagtcgattctcattcaac 32567554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 83 - 232
Target Start/End: Complemental strand, 2529958 - 2529809
Alignment:
Q  83 caaagtatctatccttgcttggcgacttttgaaagatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagttgtgt 182  Q
    |||||| || |||||||||||||| || ||||  ||||| |||||||||||| | ||||||| | | ||||| ||| ||| ||||||||| | ||| |||    
T  2529958 caaagtttcaatccttgcttggcggctattgagggatcgcttacctacaaaatacaatttggtagatcgtggaattctacttttggaggctcggttttgt 2529859  T
Q  183 gtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttg 232  Q
    ||| | || |||||| | ||||||||||| | ||||||||||||||||||    
T  2529858 gttacagggtgtgggcatgttgaagatgtgactcatttgtttttgtcttg 2529809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 17699589 - 17699507
Alignment:
Q  48 aatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctac 130  Q
    ||||||||||||||||||||||||||||||||  | ||||| ||||||||||||||||||||  |||  ||||| ||||||||    
T  17699589 aatatggagttaatttggcataaacaggttcccttaaaagtttctatccttgcttggcgactgctgagggatcgtttacctac 17699507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 233
Target Start/End: Original strand, 13879522 - 13879705
Alignment:
Q  50 tatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctacaaaaaataatttggcaaac 149  Q
    |||||||||| | ||||| ||| |||| |||||||||||  |  || ||||||||||  | ||||  ||||| |||||||| |||   |||||||||||     
T  13879522 tatggagttagtctggcacaaataggtacctctcaaagttacagtctttgcttggcggttgttgagggatcgtttacctactaaagccaatttggcaaat 13879621  T
Q  150 cgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgt 233  Q
    |||||||||||||| ||||||||   | | |||||  | ||||||||| | |||||||||||   |||| ||||||||||||||    
T  13879622 cgtggcattttaccgttggaggctaggctttgtgtcacgggatgtgggcatgttgaagatgtgtctcatctgtttttgtcttgt 13879705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 180 - 298
Target Start/End: Complemental strand, 17699457 - 17699339
Alignment:
Q  180 tgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggag 279  Q
    ||||| || |||||| || | ||||||||||| |||||||| ||||||||||||  || |||| ||||||| |||||  |||||||||| ||||| || |    
T  17699457 tgtgtatcgggatgtaggcaggttgaagatgtgaatcatttatttttgtcttgtccaatttttggtgcattgtgacctttggtgcgggcttggcttggtg 17699358  T
Q  280 tggtaggggtcgattctca 298  Q
    | | |||||| ||||||||    
T  17699357 tcgaaggggtagattctca 17699339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 409 - 443
Target Start/End: Original strand, 26087797 - 26087831
Alignment:
Q  409 gcgcgtgagaagggcatagggtgggaaaaataata 443  Q
    ||||||||||||||||||||||||||||| |||||    
T  26087797 gcgcgtgagaagggcatagggtgggaaaagtaata 26087831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 17 - 306
Target Start/End: Original strand, 11277254 - 11277543
Alignment:
Q  17 gacatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaa 116  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  11277254 gacatcacaggagcaaccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaga 11277353  T
Q  117 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatc 216  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  11277354 gatcggttacctacgaaaaataatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaagatgttaatc 11277453  T
Q  217 atttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctcaatcaactt 306  Q
    ||||||||| ||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||| || ||||||||||| |||||||    
T  11277454 atttgttttagtcttgtgtaaattttagtgcattatggccaatggtgcgagcatggctaggagtggtgggagtcgattctcattcaactt 11277543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 17 - 306
Target Start/End: Complemental strand, 47877121 - 47876832
Alignment:
Q  17 gacatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaa 116  Q
    ||||||||| ||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |    
T  47877121 gacatcacaggagcagccccagttacatcaaaatagggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgaga 47877022  T
Q  117 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatc 216  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  47877021 gatcagttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgcgggaacgttgaagatgttaatc 47876922  T
Q  217 atttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctcaatcaactt 306  Q
    |||||||||||||||||  |||||||||||||||||||| | || ||||||||||||||||||||||||||||||| ||| |||||||||    
T  47876921 atttgtttttgtcttgttcaacttttagtgcattatgacaattgatgcgggcatggctaggagtggtaggggtcgactcttaatcaactt 47876832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 306
Target Start/End: Complemental strand, 37919682 - 37919393
Alignment:
Q  17 gacatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaa 116  Q
    ||||||||| ||||||||||| ||||| ||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||| |    
T  37919682 gacatcacaggagcagccccaattacatcatcatatgaagttaatttggtataaacaggttcctctcaaagtatctatccttgcttggcgactcctgaga 37919583  T
Q  117 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatc 216  Q
    ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||    
T  37919582 gattggttacctacaaaaaataatttggcaaaccgttgcattttacctttggaggcgcggttgtgtgtttctagttgtgggaacgttgaagatgttaatc 37919483  T
Q  217 atttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctcaatcaactt 306  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  37919482 atttatttttgtcttgtgtaacttttagtgcattatggccaatggtgcgggcatggctaggagtggtaggggtcgaatctcaatcaactt 37919393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 17 - 304
Target Start/End: Complemental strand, 29968113 - 29967826
Alignment:
Q  17 gacatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaa 116  Q
    ||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| |    
T  29968113 gacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttgaggacttttgaga 29968014  T
Q  117 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatc 216  Q
    |||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  29968013 gatcggttacctacgaaaagtaatttggcaaaccatggcattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaagatgttaatc 29967914  T
Q  217 atttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctcaatcaac 304  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| || || |||||||| |||||    
T  29967913 atttgtttttgtcttgtgtaacttttagtgctttatggccaatggtgcgagcatggctaggagtggtgggagtagattctcattcaac 29967826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 303
Target Start/End: Original strand, 235439 - 235727
Alignment:
Q  17 gacatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaa 116  Q
    ||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||      
T  235439 gacatcacaggagcagccccagttacatcaaaatatggagttaatttggcataaacaggttcatctcaaagtctctatccttgcttggcgacttctgagg 235538  T
Q  117 gatcggttacctacaaaaaata--atttggcaaaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaa 214  Q
    |||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||| ||||||||||||||| || | ||||||||||||||||||    
T  235539 gatcggttacctacaaaaaaaatcatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggttgcgagaacgttgaagatgttaa 235638  T
Q  215 tcatttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctcaatcaa 303  Q
    |||||||||||||||||||  |||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  235639 tcatttgtttttgtcttgttcaacttttagtgccttatggccaatggtgcgggcatggctcggagtggtaggggtcgactctcaatcaa 235727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 17 - 306
Target Start/End: Complemental strand, 17720773 - 17720484
Alignment:
Q  17 gacatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaa 116  Q
    ||||||||| |||||||| || ||||| || ||  |||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||| |||      
T  17720773 gacatcacaggagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttcctctcaaagtttctatccttgcatggcgacttctgagg 17720674  T
Q  117 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatc 216  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| | ||||||||||| | |||||||| |  |||||||||||||    
T  17720673 gatcggttacctacaaaagataatttggcaaaccgtggcattttacctctggaggcgcggatgtgtgtttctagttgtgggaatgaagaagatgttaatc 17720574  T
Q  217 atttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctcaatcaactt 306  Q
    |||||||||||||||||| |||||||||||| ||||| ||| ||||||  |||||||| |||||||||||||| || |||||||||||||    
T  17720573 atttgtttttgtcttgtgcaacttttagtgccttatggccattggtgcaagcatggcttggagtggtaggggttgactctcaatcaactt 17720484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 17 - 306
Target Start/End: Original strand, 4938130 - 4938419
Alignment:
Q  17 gacatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaa 116  Q
    ||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||  |||      
T  4938130 gacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagg 4938229  T
Q  117 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatc 216  Q
    ||||||||||||||||||  |||||||||||| ||||||||| || || |||||| || ||| || ||| ||||||||||||  || |||||||||| ||    
T  4938230 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgcgttgctggatgtgggattgtcgaagatgttactc 4938329  T
Q  217 atttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctcaatcaactt 306  Q
    |||||||||||||||||| ||||||| |||||||||| || |||||||||   ||| ||||||||||||| ||||| |||||||||||||    
T  4938330 atttgtttttgtcttgtgcaacttttggtgcattatggccgatggtgcggcattggttaggagtggtaggtgtcgactctcaatcaactt 4938419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 137 - 306
Target Start/End: Original strand, 31177427 - 31177596
Alignment:
Q  137 taatttggcaaaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgta 236  Q
    ||||||| |||| ||||||||| ||  | |||||| || ||| |||||| ||||||||||||  || |||||||||| |||||||||||||||||||| |    
T  31177427 taatttgacaaatcgtggcattctatatgtggaggagcggttatgtgttgctggatgtgggattgtcgaagatgttactcatttgtttttgtcttgtgca 31177526  T
Q  237 acttttagtgcattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctcaatcaactt 306  Q
    |||||| |||||||||| || |||||||||   ||| ||||||||||||| ||||| |||||||||||||    
T  31177527 acttttggtgcattatggccgatggtgcggcattggttaggagtggtaggtgtcgactctcaatcaactt 31177596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 48 - 274
Target Start/End: Complemental strand, 25619566 - 25619340
Alignment:
Q  48 aatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctacaaaaaataatttggcaa 147  Q
    |||||||||||||| |||||||||||||||||| | ||||| |||||||||||||||||  | ||||  || || |||||||| |||   || ||||||     
T  25619566 aatatggagttaatatggcataaacaggttcctttaaaagtttctatccttgcttggcggttgttgagggaacgattacctactaaatccaacttggcag 25619467  T
Q  148 accgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgc 247  Q
    | |||||||||  | || ||||||  |  || |||||  | ||||||||| | ||||||||||| |||||| ||||||||||||||  || |||  ||||    
T  25619466 atcgtggcattgcatctgtggaggaccgattttgtgtcacaggatgtgggcatgttgaagatgtgaatcatatgtttttgtcttgtccaattttcggtgc 25619367  T
Q  248 attatgaccaatggtgcgggcatggct 274  Q
    ||| || || | |||||||| ||||||    
T  25619366 attgtggcctaaggtgcgggaatggct 25619340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 48 - 274
Target Start/End: Complemental strand, 37254865 - 37254639
Alignment:
Q  48 aatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctacaaaaaataatttggcaa 147  Q
    |||||||||||||| ||||||||||||||| || | ||||| || ||||||||||||||  | ||||  ||||| |||||||| |||   || ||||||     
T  37254865 aatatggagttaatctggcataaacaggttactttaaaagtttcaatccttgcttggcggttgttgagggatcgtttacctactaaatccaacttggcag 37254766  T
Q  148 accgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgc 247  Q
    |  |||||||| || || ||||| | | ||| |||||  | | ||||||  |  |||||||||| |||||| ||||||||||||||  || |||  ||||    
T  37254765 attgtggcattatatctgtggagactcggttttgtgtcacggaatgtggacattttgaagatgtgaatcatatgtttttgtcttgtccaattttcggtgc 37254666  T
Q  248 attatgaccaatggtgcgggcatggct 274  Q
    ||| || || |||||||||||||||||    
T  37254665 attgtggcctatggtgcgggcatggct 37254639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 18532735 - 18532653
Alignment:
Q  48 aatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctac 130  Q
    |||||||||||||| | |||||||||||||||| | ||||| | |||||||||||||||||| ||||  ||||| ||||||||    
T  18532735 aatatggagttaatctcgcataaacaggttcctttaaaagtttatatccttgcttggcgactgttgagggatcgtttacctac 18532653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 298
Target Start/End: Complemental strand, 18530452 - 18530367
Alignment:
Q  213 aatcatttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctca 298  Q
    |||||||||||||||||||||  || |||| ||||||| || || ||||||||||| ||||| || || | |||||| ||||||||    
T  18530452 aatcatttgtttttgtcttgtccaatttttggtgcattgtggcctatggtgcgggcttggcttggtgtcgaaggggtagattctca 18530367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 304
Target Start/End: Complemental strand, 23238521 - 23238234
Alignment:
Q  18 acatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaag 117  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||| ||    
T  23238521 acatcacaggagcaaccccagttacaccataatatggagttaatttggcataaataggttcctctcaaagtttctatccttgcttggagacttttgagag 23238422  T
Q  118 atcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatca 217  Q
    ||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  23238421 atcggttacctacgaaaagtaatttggcaaaccgtggcattttagctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaagatgttaatca 23238322  T
Q  218 tttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtaggg-gtcgattctcaatcaac 304  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||| ||||||||||| |||||    
T  23238321 tttgtttttgtcttgtgtaacttttagtgcattatggccaatggtgcgagcatggctaggagtggtggggagtcgattctcattcaac 23238234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 33 - 304
Target Start/End: Complemental strand, 8228148 - 8227877
Alignment:
Q  33 ccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctacaa 132  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |    
T  8228148 ccccagttacaccataatatggagttaatttgacataaacaggttcctctcaaagtatctatccttgcttggagacttttgagagatcggttacctacga 8228049  T
Q  133 aaaataatttggcaaaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttg 232  Q
    ||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  8228048 aaagtaatttggcaaaccgtgacattttacctttggaggcgcggttgtgtgtttctggatgtgagaacgttgaagatgttaatcatttgtttttgtcttg 8227949  T
Q  233 tgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctcaatcaac 304  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||||| || ||||||||||| |||||    
T  8227948 tgtaacttttagtgcattatggccaatggtgcgagcatggctaggagtggtgggagtcgattctcattcaac 8227877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 306
Target Start/End: Original strand, 28535677 - 28535966
Alignment:
Q  17 gacatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaa 116  Q
    ||||||||| |||||||| |||||||| || || ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||      
T  28535677 gacatcacaggagcagcctcagttacatcaaaacatggagttaatttggcatacacaggttcctctcaaagtttctatccttgcttggcgacttctgagg 28535776  T
Q  117 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatc 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| || ||||||||  |||    
T  28535777 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagatgtgtgtttctggttgtgggaatgtagaagatgtcgatc 28535876  T
Q  217 atttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctcaatcaactt 306  Q
    |||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||| |||||||||||||| || |||||||||||||    
T  28535877 atttgtttttgtcttgtgcaacttttagtgccttatggccaatggtgcgggcatggcttggagtggtaggggttgactctcaatcaactt 28535966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 17 - 306
Target Start/End: Original strand, 35983793 - 35984082
Alignment:
Q  17 gacatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaa 116  Q
    ||||||||| |||||||| |||||||| || || |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||      
T  35983793 gacatcacaggagcagcctcagttacatcaaaacatggagttaatttggcttacacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 35983892  T
Q  117 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatc 216  Q
     ||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||| ||| |||||||| || |||| ||| ||||    
T  35983893 aatcggttacctacaaaaaataatttggcaaaccatgacattttacctttggaggcgcggttgtgtgtttttggttgtgggaatgtagaagttgtcaatc 35983992  T
Q  217 atttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctcaatcaactt 306  Q
    |||||||||||||||||| |||||||||||| ||||| ||||||||||||||||| || ||||||||||||||||| |||||||||||||    
T  35983993 atttgtttttgtcttgtgcaacttttagtgccttatggccaatggtgcgggcatgacttggagtggtaggggtcgactctcaatcaactt 35984082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 170; E-Value: 8e-91
Query Start/End: Original strand, 17 - 306
Target Start/End: Complemental strand, 42928269 - 42927980
Alignment:
Q  17 gacatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaa 116  Q
    |||||| || || |||||||||||||| |  |||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| ||| |||      
T  42928269 gacatcgcaggaacagccccagttacatccaaatatggagttaatttggtataaacaggttcctctcaaagtctctatccttgtttggcggcttctgagg 42928170  T
Q  117 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatc 216  Q
    ||||||||| ||||||||||||||||| ||||| ||||||||||||| ||||||| || ||||||||| |||||||| ||||||||||||||||| ||||    
T  42928169 gatcggttaactacaaaaaataatttgacaaactgtggcattttacccttggaggtgcggttgtgtgtctctggatgcgggaacgttgaagatgtcaatc 42928070  T
Q  217 atttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctcaatcaactt 306  Q
    ||||||| ||||| |||  |||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||    
T  42928069 atttgttcttgtcatgtccaacttttagtgccttatgaccattggtgcgggcatggctcggagtggtaggggtcgactctcaatcaactt 42927980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 17 - 306
Target Start/End: Complemental strand, 12825337 - 12825048
Alignment:
Q  17 gacatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaa 116  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||      
T  12825337 gacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaagttcctctcaaagtatgtatccttgcttggcgacttctgagg 12825238  T
Q  117 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatc 216  Q
    ||||||||||||||||||  |||||||||||| ||||||||| || || |||||| || ||| |||||||||||||||||||  || |||||||||  ||    
T  12825237 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 12825138  T
Q  217 atttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctcaatcaactt 306  Q
    |||||||||||||||||| ||||||| |||||||||| || ||||||||||  ||| |||| |||||||| ||||| |||| ||||||||    
T  12825137 atttgtttttgtcttgtgcaacttttggtgcattatggccgatggtgcgggattggttaggcgtggtaggtgtcgactctcgatcaactt 12825048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 17 - 306
Target Start/End: Original strand, 27117163 - 27117452
Alignment:
Q  17 gacatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaa 116  Q
    ||||||||| ||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||      
T  27117163 gacatcacaggagcagatccagttacaccataatatggacttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 27117262  T
Q  117 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatc 216  Q
    || |||||||| ||||||  |||||||| ||||||||||||| || || |||||| || ||| ||||||||||| |||||||| || |||||||||  ||    
T  27117263 gaccggttacccacaaaacttaatttggtaaaccgtggcattctatctatggaggagcggttatgtgtttctggctgtgggaatgtcgaagatgtttctc 27117362  T
Q  217 atttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctcaatcaactt 306  Q
    |||||||||||||||||| ||||||| | |||||||| || |||||| |||  ||| ||||||||||||||||||| |||||||||||||    
T  27117363 atttgtttttgtcttgtgcaacttttggagcattatggccgatggtgtgggattggttaggagtggtaggggtcgactctcaatcaactt 27117452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 17 - 306
Target Start/End: Original strand, 30732316 - 30732605
Alignment:
Q  17 gacatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaa 116  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||      
T  30732316 gacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggttcctctcaaagtatctatctttgcttggcgacttctgagg 30732415  T
Q  117 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatc 216  Q
    ||||||||||||||||||  |||||||||||| ||||||||| || || |||||| || ||| |||||||||||||||||||  || |||||||||  ||    
T  30732416 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 30732515  T
Q  217 atttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctcaatcaactt 306  Q
    |||||||||||||||||  ||||||| |||||||||  || ||||||||||  ||| |||| |||||||| ||||| |||| ||||||||    
T  30732516 atttgtttttgtcttgtacaacttttggtgcattatagccgatggtgcgggattggttaggcgtggtaggtgtcgactctcgatcaactt 30732605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 17 - 306
Target Start/End: Complemental strand, 42513858 - 42513569
Alignment:
Q  17 gacatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaa 116  Q
    ||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||  |||      
T  42513858 gacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagg 42513759  T
Q  117 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatc 216  Q
    ||||||||||||||||||  |||||||||||| |||| |||| || || |||||| || ||| || ||| ||||||||||||  || |||||||||| ||    
T  42513758 gatcggttacctacaaaacttaatttggcaaatcgtgacattctatctgtggaggagcggttatgcgttgctggatgtgggattgtcgaagatgttactc 42513659  T
Q  217 atttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctcaatcaactt 306  Q
    |||| ||||||||||||| ||||||| |||||||||| || |||||||||   ||| ||||||||||||| ||||| |||||||||||||    
T  42513658 atttttttttgtcttgtgcaacttttggtgcattatggccgatggtgcggcattggttaggagtggtaggtgtcgactctcaatcaactt 42513569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 140; E-Value: 7e-73
Query Start/End: Original strand, 48 - 306
Target Start/End: Original strand, 19255155 - 19255414
Alignment:
Q  48 aatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctacaaaaaataatttggcaa 147  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||  || |||  |||||||||||||||||||||||||||||||    
T  19255155 aatatggagttaatttggcataaacagatttctctcaaagtatctatccttgcttggcggtttctgagggatcggttacctacaaaaaataatttggcaa 19255254  T
Q  148 accgtggcattttacctttggag-gcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtg 246  Q
    |  |||||||| | || |||||| |||| |||||||||  ||||||| ||| ||||||||||||| ||||||||||| |||||||||  ||||||| |||    
T  19255255 attgtggcattattcccttggagcgcgcggttgtgtgtcactggatgcgggcacgttgaagatgtcaatcatttgttcttgtcttgtccaacttttggtg 19255354  T
Q  247 cattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctcaatcaactt 306  Q
    | |||||  || |||||||||||||||| |||||||||||||||||||||||| ||||||    
T  19255355 ccttatggacattggtgcgggcatggctcggagtggtaggggtcgattctcaaacaactt 19255414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 101 - 306
Target Start/End: Original strand, 12820035 - 12820240
Alignment:
Q  101 ttggcgacttttgaaagatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaac 200  Q
    |||||||||| |||  ||||||||||||||||||  |||||||||||| ||||||||| || || |||||| || ||| |||||||||||||||||||      
T  12820035 ttggcgacttatgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgtgtttctggatgtgggatt 12820134  T
Q  201 gttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctcaat 300  Q
    || ||||||||   |||||||||||||||||||| ||||||| |||||||||| || ||||||||||  ||| |||| |||||||| ||||| |||| ||    
T  12820135 gtcgaagatgtctctcatttgtttttgtcttgtgcaacttttggtgcattatggccgatggtgcgggattggttaggcgtggtaggtgtcgactctcgat 12820234  T
Q  301 caactt 306  Q
    ||||||    
T  12820235 caactt 12820240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 17 - 154
Target Start/End: Complemental strand, 31641649 - 31641513
Alignment:
Q  17 gacatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaa 116  Q
    ||||||||| |||||||| || ||||| || || ||||||||||||||||||| |||||||||||| ||||| ||||||||||| ||| ||||  |||      
T  31641649 gacatcacaggagcagcctcacttacatcaaaacatggagttaatttggcatacacaggttcctct-aaagtttctatccttgcatggagactactgagg 31641551  T
Q  117 gatcggttacctacaaaaaataatttggcaaaccgtgg 154  Q
    ||||||||||||||||||||||||||||||||||||||    
T  31641550 gatcggttacctacaaaaaataatttggcaaaccgtgg 31641513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 187 - 306
Target Start/End: Complemental strand, 3418751 - 3418632
Alignment:
Q  187 ctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtagg 286  Q
    ||||||||||||  || |||||||||| |||||||||||||||||||| ||||||| |||||||||| || |||||||||   ||| |||||||||||||    
T  3418751 ctggatgtgggattgtcgaagatgttactcatttgtttttgtcttgtgcaacttttggtgcattatggccgatggtgcggcattggttaggagtggtagg 3418652  T
Q  287 ggtcgattctcaatcaactt 306  Q
     ||||| |||||||||||||    
T  3418651 tgtcgactctcaatcaactt 3418632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 48 - 298
Target Start/End: Original strand, 25857457 - 25857707
Alignment:
Q  48 aatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctacaaaaaataatttggcaa 147  Q
    ||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||| ||||  ||||| |||||||| |||  ||||||||       
T  25857457 aatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagggatcgcttacctactaaatctaatttggtgg 25857556  T
Q  148 accgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgc 247  Q
      || || ||| || || ||||    |  || |||||  | ||||||||| | ||||||||||| |||||||| |||||||||||| | |||||| ||||    
T  25857557 cacgagggattatagctgtggaaaaccgattttgtgtaacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtttgacttttggtgc 25857656  T
Q  248 attatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctca 298  Q
     || || ||  |||||||||| ||||| || || | |||||||||||||||    
T  25857657 cttgtggcctctggtgcgggcttggcttggtgtcgaaggggtcgattctca 25857707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 48 - 298
Target Start/End: Original strand, 8300215 - 8300465
Alignment:
Q  48 aatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctacaaaaaataatttggcaa 147  Q
    ||||||||||||||||||||||||||||||||| | ||||| |||||||||| ||||||||| ||||  ||||| |||||||| |||  ||||||||       
T  8300215 aatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgtttggcgactgttgagggatcgcttacctactaaatctaatttggtgg 8300314  T
Q  148 accgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgc 247  Q
      || || ||| || || ||||    | ||| |||||  | ||||||||| | ||||||||||| |||||||| ||||||||||||   |||||| ||||    
T  8300315 cacgagggattatagctgtggaaaaccggttttgtgtaacgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgc 8300414  T
Q  248 attatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctca 298  Q
     || || ||  || ||||||| ||||| || || | |||||||||||||||    
T  8300415 cttgtggcctctgatgcgggcttggcttggtgtcgaaggggtcgattctca 8300465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 48 - 134
Target Start/End: Complemental strand, 27767149 - 27767063
Alignment:
Q  48 aatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctacaaaa 134  Q
    ||||||||||||||||||||||||||||||||| | ||||| | |||||||||||||||||| ||||  ||||| ||||||||||||    
T  27767149 aatatggagttaatttggcataaacaggttcctttaaaagtttatatccttgcttggcgactgttgagggatcgtttacctacaaaa 27767063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 48 - 250
Target Start/End: Original strand, 33385407 - 33385609
Alignment:
Q  48 aatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctacaaaaaataatttggcaa 147  Q
    ||||||||||||||||||||||||||||||||  | ||||| |||||||||||||||||||| ||||  ||||| |||||||| |||   |||||||       
T  33385407 aatatggagttaatttggcataaacaggttcccttaaaagtttctatccttgcttggcgactgttgagggatcgtttacctactaaatcaaatttggtgg 33385506  T
Q  148 accgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgc 247  Q
      ||||| ||| || || ||||    | ||| ||||| || ||||||||| | ||||||||||| |||||||| ||||||||||||  || |||| ||||    
T  33385507 cacgtggaattatatctgtggaaaatcggttttgtgtatcgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccaatttttggtgc 33385606  T
Q  248 att 250  Q
    |||    
T  33385607 att 33385609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 49 - 250
Target Start/End: Complemental strand, 10776870 - 10776669
Alignment:
Q  49 atatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctacaaaaaataatttggcaaa 148  Q
    |||||||||||||||||||||||||||||||  | ||||| ||||||||||||||||||||  |||  ||||| |||||||| |||   |||||||        
T  10776870 atatggagttaatttggcataaacaggttcccttaaaagtttctatccttgcttggcgactgctgagggatcgtttacctactaaatcaaatttggtggc 10776771  T
Q  149 ccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgca 248  Q
     ||||| ||| || || ||||    | ||| ||||| || ||||||||| | ||||||||||| |||||||| ||||||||||||  || |||| |||||    
T  10776770 acgtgggattatatctgtggaaaatcggttttgtgtatcgggatgtgggcaagttgaagatgtgaatcatttatttttgtcttgtccaatttttggtgca 10776671  T
Q  249 tt 250  Q
    ||    
T  10776670 tt 10776669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 255 - 306
Target Start/End: Complemental strand, 25824911 - 25824860
Alignment:
Q  255 ccaatggtgcgggcatggctaggagtggtaggggtcgattctcaatcaactt 306  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  25824911 ccaatggtgcgggcatggcttggagtggtaggggtcgactctcaatcaactt 25824860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 233
Target Start/End: Complemental strand, 27795588 - 27795405
Alignment:
Q  50 tatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctacaaaaaataatttggcaaac 149  Q
    |||||||||| | ||||| |||||||| |||||||||||  |  || ||||||||||  | ||||  ||||| || ||||| |||   |||||||||||     
T  27795588 tatggagttagtctggcacaaacaggtacctctcaaagttacagtctttgcttggcggttgttgagggatcgtttgcctactaaagccaatttggcaaat 27795489  T
Q  150 cgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgt 233  Q
    |||||||||||||| ||||||||   | | |||||  | || |||||| | |||||||||||   |||||||||||||||||||    
T  27795488 cgtggcattttaccgttggaggctaggctatgtgtcacgggctgtgggcatgttgaagatgtgtctcatttgtttttgtcttgt 27795405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 274
Target Start/End: Original strand, 18359125 - 18359350
Alignment:
Q  48 aatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctacaaaaaataatttggcaa 147  Q
    |||||||||||||| | |||||||||||||||| | ||||| || ||||||||||||||  | ||||  ||||| |||||||| |||   || ||||||     
T  18359125 aatatggagttaatctagcataaacaggttcctttaaaagtttcaatccttgcttggcggttgttgagggatcgtttacctactaaatccaacttggcag 18359224  T
Q  148 accgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgc 247  Q
    | ||| ||||| ||  | ||||||  | ||| |||||  | |||| |||| | ||||||||||| |||||| ||||||||||||||   | |||  ||||    
T  18359225 atcgt-gcattatatatgtggaggatcggttttgtgtcacgggatctgggcatgttgaagatgtgaatcatatgtttttgtcttgtccgattttcggtgc 18359323  T
Q  248 attatgaccaatggtgcgggcatggct 274  Q
    ||| || || |||| ||||||||||||    
T  18359324 attgtggcctatggggcgggcatggct 18359350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 233
Target Start/End: Original strand, 27165976 - 27166170
Alignment:
Q  39 ttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctacaaaaaata 138  Q
    ||||| || |||||||| |||||||||||  ||||||| ||||| ||||| |||||| | | |||||||    |||| ||||| ||||||| ||||   |    
T  27165976 ttacatcaaaatatggaattaatttggcaccaacaggtacctctaaaagtctctatcttcgtttggcgaacgctgaaggatcgtttacctataaaagcaa 27166075  T
Q  139 atttggcaaaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgt 233  Q
    |||||||||  ||||| ||| | |||||||| ||||||||||||||  |||| | |||| | ||||| |||   | |||||||||| ||||||||    
T  27166076 atttggcaagtcgtggaattcttcctttggaagcgcagttgtgtgtggctggttatgggcatgttgaggattcgactcatttgtttctgtcttgt 27166170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 149
Target Start/End: Complemental strand, 26073030 - 26072898
Alignment:
Q  17 gacatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaa 116  Q
    |||||| || || |||||||| || || || ||| |||||||||||||||||||| | |||||| | |||||  ||||| ||| ||||||||| ||||      
T  26073030 gacatcgcaggaacagccccatttgcatcaaaatttggagttaatttggcataaatatgttcctttgaaagtccctatctttgtttggcgactgttgagg 26072931  T
Q  117 gatcggttacctacaaaaaataatttggcaaac 149  Q
    ||||| |||||||| ||| | || |||||||||    
T  26072930 gatcgattacctactaaagagaaattggcaaac 26072898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 130
Target Start/End: Original strand, 18089798 - 18089876
Alignment:
Q  52 tggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctac 130  Q
    |||||||||||||||| |||||||| ||  | ||||| |||||| ||||||| ||||| |||| |||||| ||||||||    
T  18089798 tggagttaatttggcacaaacaggtaccgttgaaagtctctatctttgcttgacgactattgagagatcgtttacctac 18089876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 409 - 447
Target Start/End: Complemental strand, 4064274 - 4064236
Alignment:
Q  409 gcgcgtgagaagggcatagggtgggaaaaataatagtca 447  Q
    ||||| ||||||| |||||||||||||||||||||||||    
T  4064274 gcgcgggagaaggtcatagggtgggaaaaataatagtca 4064236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 147
Target Start/End: Complemental strand, 33169775 - 33169666
Alignment:
Q  38 gttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctacaaaaaat 137  Q
    |||||| || ||||||||||| |||||||| |||||||| ||| | ||||| |||||  ||||||||||  |  |||  || ||||||||||| ||| |     
T  33169775 gttacatcaaaatatggagttgatttggcacaaacaggtgcctttgaaagtgtctatttttgcttggcgtttgctgagggaccggttacctactaaacaa 33169676  T
Q  138 aatttggcaa 147  Q
    ||||||||||    
T  33169675 aatttggcaa 33169666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 306
Target Start/End: Complemental strand, 15740359 - 15740070
Alignment:
Q  17 gacatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaa 116  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |    
T  15740359 gacatcataggagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggagacttttgcga 15740260  T
Q  117 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatc 216  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||| |||||||| ||| ||||||||||||    
T  15740259 gatcggttacctacaaaaaataatttgacaagccgtggcattttacctttggaggcgcggttgtgtgtttctgggtgtgggaatgttaaagatgttaatc 15740160  T
Q  217 atttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctcaatcaactt 306  Q
    ||||||||||||||||| |||||||| |||| ||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  15740159 atttgtttttgtcttgtctaacttttggtgccttatggccattggtgcgagcatggctaggagtggtaggggtcgattctcaatcaactt 15740070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 17 - 302
Target Start/End: Original strand, 1828542 - 1828827
Alignment:
Q  17 gacatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaa 116  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||  |    
T  1828542 gacatcacaggagcagccccagttacatcataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggagactattgcga 1828641  T
Q  117 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatc 216  Q
    ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||| |||    
T  1828642 gataggttacctacaaaaactaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgttgatc 1828741  T
Q  217 atttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctcaatca 302  Q
    |||||||||||||||||| ||||||| |||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  1828742 atttgtttttgtcttgtgcaacttttggtgctttatgaccattggtgcgagcatggctaggagtggtaggggtcgattctcaatca 1828827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 17 - 306
Target Start/End: Complemental strand, 19755405 - 19755111
Alignment:
Q  17 gacatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaa 116  Q
    ||||||||||||||||||||| || || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |    
T  19755405 gacatcacaagagcagccccaatttcatcatcatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgactcctgaga 19755306  T
Q  117 gatcggttacctacaaaaaataatttggcaaaccgtggcatt---ttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgtta 213  Q
    ||||||||||||||||||||||||||||||||||||| ||||   |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  19755305 gatcggttacctacaaaaaataatttggcaaaccgtgacattttattacctttggaggcgcggttgtgtgtttctggatgtgggagcgttgaagatgtta 19755206  T
Q  214 atcatttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtgg--taggggtcgattctcaatcaactt 306  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||  |||||||||| |||||||||||||    
T  19755205 atcatttgtttttgtcttgtgtaacttttagtgcattatggtcaatggtgcgggcatggctaggagtggtataggggtcgaatctcaatcaactt 19755111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 17 - 306
Target Start/End: Original strand, 19784401 - 19784695
Alignment:
Q  17 gacatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaa 116  Q
    ||||||||||||||||||||| || || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |    
T  19784401 gacatcacaagagcagccccaatttcatcatcatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgactcctgaga 19784500  T
Q  117 gatcggttacctacaaaaaataatttggcaaaccgtggcatt---ttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgtta 213  Q
    ||||||||||||||||||||||||||||||||||||| ||||   |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  19784501 gatcggttacctacaaaaaataatttggcaaaccgtgacattttattacctttggaggcgcggttgtgtgtttctggatgtgggagcgttgaagatgtta 19784600  T
Q  214 atcatttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtgg--taggggtcgattctcaatcaactt 306  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||  |||||||||| |||||||||||||    
T  19784601 atcatttgtttttgtcttgtgtaacttttagtgcattatggtcaatggtgcgggcatggctaggagtggtataggggtcgaatctcaatcaactt 19784695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 17 - 306
Target Start/End: Original strand, 47685897 - 47686186
Alignment:
Q  17 gacatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaa 116  Q
    ||||||||||||||||||| |||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  47685897 gacatcacaagagcagcccaagttacaccataatctggacttaatttgacataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaga 47685996  T
Q  117 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatc 216  Q
    |||||||||||||||||| |||||||||||||||||||||||||| || |||||| || ||| |||||||||||||||||||| || |||||||||  ||    
T  47685997 gatcggttacctacaaaacataatttggcaaaccgtggcattttatctgtggaggagcggttatgtgtttctggatgtgggaatgtcgaagatgtttctc 47686096  T
Q  217 atttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctcaatcaactt 306  Q
     ||||||||||||||||| |||||||||||||||||| || ||||||||||  ||| ||||||||||||||||||| |||||||||||||    
T  47686097 gtttgtttttgtcttgtgcaacttttagtgcattatggccgatggtgcgggattggttaggagtggtaggggtcgactctcaatcaactt 47686186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 190; E-Value: 1e-102
Query Start/End: Original strand, 17 - 306
Target Start/End: Complemental strand, 7404051 - 7403762
Alignment:
Q  17 gacatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaa 116  Q
    ||||||||| ||||||||||||||||| || |||||| ||||||||||||||||||| |||| | ||||||| ||||||||||||||||||||| |||      
T  7404051 gacatcacaggagcagccccagttacatcaaaatatgaagttaatttggcataaacaagttcatttcaaagtctctatccttgcttggcgacttctgagg 7403952  T
Q  117 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatc 216  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||| ||||||||||||||||| ||||    
T  7403951 gatcggttacctacaaaaaagaatttggcaaaccgtggcattttacgtttggaggcgcggttgtgtgtctctggatgcgggaacgttgaagatgtcaatc 7403852  T
Q  217 atttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctcaatcaactt 306  Q
    |||||||||||||||||  |||||||||||| ||||| ||| ||||| |||||||||| ||||||||||||||||| |||||||||||||    
T  7403851 atttgtttttgtcttgtccaacttttagtgccttatggccattggtgtgggcatggctcggagtggtaggggtcgactctcaatcaactt 7403762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 17 - 306
Target Start/End: Original strand, 23642593 - 23642882
Alignment:
Q  17 gacatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaa 116  Q
    ||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||  |||      
T  23642593 gacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagg 23642692  T
Q  117 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatc 216  Q
    ||||||||||||||||||  |||||||||||| ||||||||| || || |||||| || ||| || ||| ||||||||||||  || |||||||||| ||    
T  23642693 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgcgttgctggatgtgggattgtcgaagatgttactc 23642792  T
Q  217 atttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctcaatcaactt 306  Q
    |||||||||||||||||| ||||||| |||||||||| || |||||||||   ||| ||||||||||||| ||||| |||||||||||||    
T  23642793 atttgtttttgtcttgtgcaacttttggtgcattatggccgatggtgcggcattggttaggagtggtaggtgtcgactctcaatcaactt 23642882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 17 - 306
Target Start/End: Original strand, 13270893 - 13271182
Alignment:
Q  17 gacatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaa 116  Q
    ||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||  |||      
T  13270893 gacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagg 13270992  T
Q  117 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatc 216  Q
    ||||||||||||||||||  |||||||||||| ||||||||| || || |||||| || ||| || ||| ||||||||||||  || |||||||||| |     
T  13270993 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgagttactggatgtgggattgtcgaagatgttacta 13271092  T
Q  217 atttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctcaatcaactt 306  Q
    |||| ||||||||||||| ||||||| |||||||||| || |||||||||   ||| ||||||||||||| ||||| |||||||||||||    
T  13271093 atttatttttgtcttgtgcaacttttggtgcattatggccgatggtgcggcattggttaggagtggtaggtgtcgactctcaatcaactt 13271182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 17 - 306
Target Start/End: Complemental strand, 47418942 - 47418654
Alignment:
Q  17 gacatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaa 116  Q
    ||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||      
T  47418942 gacatcacaggagcagccccagttacaccatagtatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgactactgagg 47418843  T
Q  117 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatc 216  Q
    ||||||||||||||||||  |||||||||||  ||||||||| || ||  ||||| || ||| || ||| | ||||||||||  || |||||||||| ||    
T  47418842 gatcggttacctacaaaacttaatttggcaactcgtggcattctatctggggaggagcggttatgcgttgcaggatgtgggattgtcgaagatgttactc 47418743  T
Q  217 atttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctcaatcaactt 306  Q
    |||||||||||||||||| ||||||| |||||||||| || |||||||||   ||| ||||||| ||||| ||||| |||||||||||||    
T  47418742 atttgtttttgtcttgtgcaacttttggtgcattatggccgatggtgcggcattggttaggagt-gtaggtgtcgactctcaatcaactt 47418654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 48 - 298
Target Start/End: Complemental strand, 12697920 - 12697670
Alignment:
Q  48 aatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctacaaaaaataatttggcaa 147  Q
    |||||| | |||||||||||||||||||||||| | ||||| |||||||||||||||||||| ||||  ||||| |||||||| |||   |||||||       
T  12697920 aatatgaaattaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagggatcgtttacctactaaatcaaatttggtgg 12697821  T
Q  148 accgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgc 247  Q
    | ||||| ||| || || ||||    | ||| |||||  | ||||| ||| | ||||||||||| |||||||| ||||||||||||  || |||| ||||    
T  12697820 aacgtgggattatagctgtggaaaatcggttttgtgtaacgggatgcgggcaggttgaagatgtgaatcatttatttttgtcttgtccaatttttggtgc 12697721  T
Q  248 attatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctca 298  Q
    |||||| ||  |||||||||| ||||| || || | |||||||||||||||    
T  12697720 attatggcctttggtgcgggcttggcttggtgtcgaaggggtcgattctca 12697670  T

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Target: chr4; HSP #11
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 187 - 306
Target Start/End: Original strand, 159863 - 159982
Alignment:
Q  187 ctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtagg 286  Q
    ||||||||||||  || |||||||||| |||||||||||||||||||| ||||||| |||||||||| || |||||||||   ||| ||| |||||||||    
T  159863 ctggatgtgggattgtcgaagatgttactcatttgtttttgtcttgtgcaacttttggtgcattatggccgatggtgcggcattggttagaagtggtagg 159962  T
Q  287 ggtcgattctcaatcaactt 306  Q
     ||||| |||||||||||||    
T  159963 tgtcgactctcaatcaactt 159982  T

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Target: chr4; HSP #12
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 48 - 146
Target Start/End: Original strand, 55725719 - 55725817
Alignment:
Q  48 aatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctacaaaaaataatttggca 146  Q
    |||||||||||||||||||||||||| |||||||| ||||| || |||||||||||||| || ||||  ||||| |||||||||||| | |||||||||    
T  55725719 aatatggagttaatttggcataaacaagttcctctaaaagtttcaatccttgcttggcggctattgagggatcgcttacctacaaaatacaatttggca 55725817  T

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Target: chr4; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 48 - 274
Target Start/End: Complemental strand, 20002832 - 20002599
Alignment:
Q  48 aatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctacaaaaaataatttggcaa 147  Q
    ||||||||||||||||||||||||||||||| | | ||||| |||||| |||||||||| || ||||  ||||| |||||||| |||   || ||||||     
T  20002832 aatatggagttaatttggcataaacaggttcttttaaaagtttctatcattgcttggcggctgttgagggatcgtttacctactaaatccaacttggcag 20002733  T
Q  148 accgtggcatt-------ttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaactt 240  Q
    |||||||||||       |   || ||||||| | ||| |||||  | ||||||||| | ||||||||||| |||||| ||||||||||||||  |  ||    
T  20002732 accgtggcattacatctgtggactgtggaggctcggttttgtgtcacgggatgtgggcatgttgaagatgtgaatcatatgtttttgtcttgtccatttt 20002633  T
Q  241 ttagtgcattatgaccaatggtgcgggcatggct 274  Q
    |  ||||||| || || |||||||||||||||||    
T  20002632 tcggtgcattgtggcctatggtgcgggcatggct 20002599  T

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Target: chr4; HSP #14
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 45472742 - 45472824
Alignment:
Q  48 aatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctac 130  Q
    ||||||||||||||||||||||||||||||||| | ||||| |||||||||| ||||||||| ||||  ||||| ||||||||    
T  45472742 aatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgtttggcgactgttgagggatcgtttacctac 45472824  T

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Target: chr4; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 50 - 232
Target Start/End: Original strand, 11587233 - 11587415
Alignment:
Q  50 tatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctacaaaaaataatttggcaaac 149  Q
    |||||||||||||||||||||| || | ||| ||||||||||||| ||||||||||| ||| |||   |||| |||||||| ||| | ||||||||||||    
T  11587233 tatggagttaatttggcataaatagatacctatcaaagtatctattcttgcttggcggcttctgaggaatcgtttacctacgaaagaaaatttggcaaac 11587332  T
Q  150 cgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttg 232  Q
    ||  | |   | ||| |||||| || |||||||  | |||| || | | |||||||| |||| ||||| ||||||||||||||    
T  11587333 cgcagtaacattcctatggaggggcggttgtgtactactggttgcgagcacgttgaaaatgtgaatcacttgtttttgtcttg 11587415  T

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Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 48 - 298
Target Start/End: Complemental strand, 8361207 - 8360957
Alignment:
Q  48 aatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctacaaaaaataatttggcaa 147  Q
    ||||||||||||||||||||||||||||||||  | ||||| |||||||||| |||||||||  |||   |||| |||||||  |||   |||||||       
T  8361207 aatatggagttaatttggcataaacaggttcccttaaaagtttctatccttgtttggcgactgctgaggaatcgtttacctagtaaatcaaatttggtgg 8361108  T
Q  148 accgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgc 247  Q
      ||||| ||| || || | ||    | ||| ||||| || ||||||||| | ||||||||||| |||||||| ||||||||||||  || |||| ||||    
T  8361107 cacgtggaattatatctgttgaaaatcggttttgtgtatcgggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccaatttttggtgc 8361008  T
Q  248 attatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctca 298  Q
    ||| || ||  |||||||||| ||||| || || | |||||| ||||||||    
T  8361007 attgtggcctttggtgcgggcttggcttggtgtcgaaggggtagattctca 8360957  T

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Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 236 - 306
Target Start/End: Original strand, 20788501 - 20788571
Alignment:
Q  236 aacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctcaatcaactt 306  Q
    ||||||||| || ||||| ||| ||||||| ||||||||||||||||| |||||||| |||||||||||||    
T  20788501 aacttttagcgccttatggccattggtgcgagcatggctaggagtggtcggggtcgactctcaatcaactt 20788571  T

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Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 148
Target Start/End: Original strand, 5790131 - 5790225
Alignment:
Q  54 gagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctacaaaaaataatttggcaaa 148  Q
    |||||||||||||||||||| || ||||| |||||||||||  |||| ||| | ||  |||| ||||| |||||||| ||| | |||||||||||    
T  5790131 gagttaatttggcataaacaagtacctcttaaagtatctatttttgcgtggtgcctgatgaaggatcgtttacctactaaagagaatttggcaaa 5790225  T

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Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 2822070 - 2822152
Alignment:
Q  48 aatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctac 130  Q
    |||||||||||||| ||||| |||||||| ||||| ||||| ||  ||| |||||||||| | ||||  ||||| ||||||||    
T  2822070 aatatggagttaatctggcacaaacaggtacctctaaaagtttcagtccatgcttggcgattgttgagggatcgcttacctac 2822152  T

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Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 409 - 447
Target Start/End: Complemental strand, 55052166 - 55052128
Alignment:
Q  409 gcgcgtgagaagggcatagggtgggaaaaataatagtca 447  Q
    ||||| ||||||| |||||||||||||||||||||||||    
T  55052166 gcgcgggagaaggtcatagggtgggaaaaataatagtca 55052128  T

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Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 298
Target Start/End: Original strand, 4548405 - 4548502
Alignment:
Q  201 gttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctca 298  Q
    ||||||||||| |||||||| |||||||||||   || |||| ||||||| || ||  ||||| |||| ||||| || || | |||||||||||||||    
T  4548405 gttgaagatgtgaatcatttatttttgtcttgcccaatttttggtgcattgtggcctctggtgtgggcttggcttggtgtcgaaggggtcgattctca 4548502  T

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Target: scaffold0472 (Bit Score: 210; Significance: 1e-114; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 17 - 298
Target Start/End: Complemental strand, 3390 - 3109
Alignment:
Q  17 gacatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaa 116  Q
    ||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||| |    
T  3390 gacatcacaggagcaaccctagttacaccataatatggagttaatttggcataaacaggttcctcttaaagtttctatccttgcttggagacttttgaga 3291  T
Q  117 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatc 216  Q
    |||||||||||||| ||||  ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  3290 gatcggttacctacgaaaagcaatttggcaaaccatggcattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaagatgttaatc 3191  T
Q  217 atttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctca 298  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||| || ||||| |||||    
T  3190 atttgtttttgtcttgtgtaacttttagtgcattatggccaatggtgcgagcatggttaggagtggtgggagtcgactctca 3109  T

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Target: chr1 (Bit Score: 170; Significance: 8e-91; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 170; E-Value: 8e-91
Query Start/End: Original strand, 17 - 306
Target Start/End: Complemental strand, 51052618 - 51052329
Alignment:
Q  17 gacatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaa 116  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||      
T  51052618 gacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 51052519  T
Q  117 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatc 216  Q
    ||||||||||||||||||  |||||||||||| ||||||||| || || |||||| || ||| |||||||||||||||||||  || |||||||||  ||    
T  51052518 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgtttctc 51052419  T
Q  217 atttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctcaatcaactt 306  Q
    |||||||||||||||||| ||||||| |||||||||| || ||||||||||  ||| |||| |||||||| ||||| |||| ||||||||    
T  51052418 atttgtttttgtcttgtgcaacttttggtgcattatggccgatggtgcgggattggttaggcgtggtaggtgtcgactctcgatcaactt 51052329  T

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Target: chr1; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 17 - 306
Target Start/End: Original strand, 11909107 - 11909396
Alignment:
Q  17 gacatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaa 116  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||      
T  11909107 gacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggttcctctcaaagtatctatcattgcttggcgacttctgagg 11909206  T
Q  117 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatc 216  Q
    ||||||||||||||||||  |||||||||||| ||||||||| || || |||||| || | | |||||||||||||||||||  || |||||||||  ||    
T  11909207 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggctatgtgtttctggatgtgggattgtcgaagatgtttctc 11909306  T
Q  217 atttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctcaatcaactt 306  Q
    |||||||||||||||||| ||||||| |||||||||| || ||||||| ||  ||| |||| |||||||| ||||| |||| ||||||||    
T  11909307 atttgtttttgtcttgtgcaacttttggtgcattatggccgatggtgcaggattggttaggcgtggtaggtgtcgactctcgatcaactt 11909396  T

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Target: chr1; HSP #3
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 17 - 306
Target Start/End: Complemental strand, 35541187 - 35540898
Alignment:
Q  17 gacatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaa 116  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||      
T  35541187 gacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgactactgagg 35541088  T
Q  117 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatc 216  Q
    ||||||||||| |||||| ||||||||||||| ||||||||| || || ||||||  |  || || ||| ||||||||||||  || |||||||||| ||    
T  35541087 gatcggttacccacaaaacataatttggcaaatcgtggcattctatctgtggaggaacgattatgcgttgctggatgtgggattgtcgaagatgttactc 35540988  T
Q  217 atttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctcaatcaactt 306  Q
    |||||||||||||||||| ||||||| |||||||||| || |||||||||   ||| ||||||||||||| ||||| |||||||||||||    
T  35540987 atttgtttttgtcttgtgcaacttttggtgcattatggccgatggtgcggcattggttaggagtggtaggtgtcgactctcaatcaactt 35540898  T

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Target: chr1; HSP #4
Raw Score: 150; E-Value: 7e-79
Query Start/End: Original strand, 17 - 306
Target Start/End: Complemental strand, 6050741 - 6050452
Alignment:
Q  17 gacatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaa 116  Q
    ||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||  |||      
T  6050741 gacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagg 6050642  T
Q  117 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatc 216  Q
    ||||||||||||||||||  ||||||||||||  |||||||| || || |||||| || ||| || ||| ||||||||||||  || |||||||||| ||    
T  6050641 gatcggttacctacaaaacttaatttggcaaattgtggcattctatctgtggaggagcggttctgcgttgctggatgtgggattgtcgaagatgttactc 6050542  T
Q  217 atttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctcaatcaactt 306  Q
    |||||||||||||||||| ||||||| |||||||||| || |||||||||   ||| ||||||||||||| ||||| |||||||||||||    
T  6050541 atttgtttttgtcttgtgcaacttttggtgcattatggccgatggtgcggcattggttaggagtggtaggtgtcgactctcaatcaactt 6050452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 214 - 306
Target Start/End: Complemental strand, 6259758 - 6259666
Alignment:
Q  214 atcatttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctcaatcaactt 306  Q
    ||||||||||||||||||||||||||||| |||| ||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6259758 atcatttgtttttgtcttgtgtaacttttggtgctttatggccattggtgcgagcatggctaggagtggtaggggtcgattctcaatcaactt 6259666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 220 - 306
Target Start/End: Complemental strand, 4842339 - 4842253
Alignment:
Q  220 tgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctcaatcaactt 306  Q
    |||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  4842339 tgtttttgtcttgtgtaacttttaatgcattatggcctatggtgcgggcatggctaggagtggtaggggtcgaatctcaatcaactt 4842253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 49 - 232
Target Start/End: Original strand, 47623111 - 47623292
Alignment:
Q  49 atatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctacaaaaaataatttggcaaa 148  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||  || || |||||||| ||    |||||||||||    
T  47623111 atatggaattaatttggcataaacaggtacctctcaaagtatctattcttgcttggcggcttttgagggaccgcttacctacgaagggaaatttggcaaa 47623210  T
Q  149 ccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttg 232  Q
    ||||| |||| | ||| |||||| || ||  ||||||||||| |||||| | | ||||||||| ||||| |||||| |||||||    
T  47623211 ccgtgacattattcctatggaggggcggt--tgtgtttctggttgtgggcatgatgaagatgtgaatcacttgtttctgtcttg 47623292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 48 - 274
Target Start/End: Original strand, 37191243 - 37191469
Alignment:
Q  48 aatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctacaaaaaataatttggcaa 147  Q
    |||||||||||||| |||||||||| ||||| | | ||||| | ||||||||||||||| || |||| |||||| |||||||| |||   || ||||||     
T  37191243 aatatggagttaatctggcataaactggttcatttaaaagtttatatccttgcttggcggctgttgagagatcgattacctactaaatccaacttggcag 37191342  T
Q  148 accgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgc 247  Q
    | |||||||||  | || ||||||  |  || |||||  | ||||||||| | ||||||||||| |||||| ||||||||||||||  || |||  ||||    
T  37191343 atcgtggcattacatctgtggaggatcgattttgtgtcacgggatgtgggcatgttgaagatgtgaatcatatgtttttgtcttgtccaattttcggtgc 37191442  T
Q  248 attatgaccaatggtgcgggcatggct 274  Q
    |||||| || |||||||||| ||||||    
T  37191443 attatggcctatggtgcgggaatggct 37191469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 48 - 144
Target Start/End: Original strand, 16917842 - 16917938
Alignment:
Q  48 aatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctacaaaaaataatttgg 144  Q
    ||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||| ||||  ||||| |||||||| |||  ||||||||    
T  16917842 aatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagggatcgcttacctactaaatctaatttgg 16917938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 48 - 298
Target Start/End: Complemental strand, 43388474 - 43388224
Alignment:
Q  48 aatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctacaaaaaataatttggcaa 147  Q
    ||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||| | ||||  ||||| |||||||| |||   || ||||       
T  43388474 aatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgattgttgagggatcgtttacctactaaatcaaaattggtgg 43388375  T
Q  148 accgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgc 247  Q
    | ||||| ||| || || ||||    | ||| |||||  | |||||  || | ||||||||||| |||||||| ||||||||||||  || |||| ||||    
T  43388374 aacgtgggattatagctgtggaaaatcggttttgtgtaacgggatgcaggcaggttgaagatgtgaatcatttatttttgtcttgtccaatttttggtgc 43388275  T
Q  248 attatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctca 298  Q
    ||| || ||  |||||||||| ||||| || || | |||||||||||||||    
T  43388274 attgtggcctttggtgcgggcttggcttggtgtcgaaggggtcgattctca 43388224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 189 - 298
Target Start/End: Original strand, 16917983 - 16918092
Alignment:
Q  189 ggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtagggg 288  Q
    ||||||||| | ||||||||||| |||||||| ||||||||||||   |||||| |||| || || ||  |||||||||| ||||| || || | |||||    
T  16917983 ggatgtgggcaggttgaagatgtgaatcatttatttttgtcttgtccgacttttggtgctttgtggcctctggtgcgggcttggcttggtgtcgaagggg 16918082  T
Q  289 tcgattctca 298  Q
    ||||||||||    
T  16918083 tcgattctca 16918092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 93
Target Start/End: Complemental strand, 28351821 - 28351776
Alignment:
Q  48 aatatggagttaatttggcataaacaggttcctctcaaagtatcta 93  Q
    ||||||||||||||||||||||||| ||| ||||| ||||| ||||    
T  28351821 aatatggagttaatttggcataaaccggtccctctgaaagtctcta 28351776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 166; Significance: 2e-88; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 17 - 306
Target Start/End: Original strand, 11207 - 11496
Alignment:
Q  17 gacatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaa 116  Q
    ||||||||| |||||| ||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |      
T  11207 gacatcacaggagcagacccagctacaccataatctggacttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctcagg 11306  T
Q  117 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatc 216  Q
    ||||||||||||||||||  |||||||||||||||||||||| || || |||||| || ||| |||||||||||||||||||| || ||| |||||  ||    
T  11307 gatcggttacctacaaaacttaatttggcaaaccgtggcattctatctgtggaggagcggttatgtgtttctggatgtgggaatgtcgaaaatgtttttc 11406  T
Q  217 atttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctcaatcaactt 306  Q
    |||||||||||||||||| ||||||| | |||||||| || ||||||||||  ||| ||||||||||||||||||| |||||||||||||    
T  11407 atttgtttttgtcttgtgcaacttttggagcattatggccgatggtgcgggattggttaggagtggtaggggtcgactctcaatcaactt 11496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 162; Significance: 5e-86; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 17 - 306
Target Start/End: Complemental strand, 4552307 - 4552018
Alignment:
Q  17 gacatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaa 116  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||      
T  4552307 gacatcacaggagcagccccagttacaccataatatggacttaatttggcataaataggttcctcttaaagtatctatccttgcttggcgacttctgagg 4552208  T
Q  117 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatc 216  Q
    ||||||||||||||||||  |||||||||||| ||||||||| || || |||||| || ||| |||||||||||||||||||  || ||| |||||  ||    
T  4552207 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaaaatgtttctc 4552108  T
Q  217 atttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctcaatcaactt 306  Q
    |||||||||||||||||| ||||||| ||||||||||||| ||||||||||  ||| |||| |||||||| ||||| |||| ||||||||    
T  4552107 atttgtttttgtcttgtgcaacttttggtgcattatgaccgatggtgcgggattggttaggcgtggtaggtgtcgactctcgatcaactt 4552018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 48 - 298
Target Start/End: Complemental strand, 41207123 - 41206873
Alignment:
Q  48 aatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctacaaaaaataatttggcaa 147  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||  |||||||||||||||||||||||||||||||    
T  41207123 aatatggagttaatttggcataaacaggttcctctcaaagtctctatccttgcttggcggcttctgagggatcggttacctacaaaaaataatttggcaa 41207024  T
Q  148 accgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgc 247  Q
    | ||||||||| | || |||||||||| |||||||||  ||||||| ||| ||||||||||||| ||||||||||| |||||||||  ||||||| ||||    
T  41207023 atcgtggcattattcccttggaggcgcggttgtgtgtcactggatgcgggcacgttgaagatgtcaatcatttgttcttgtcttgtccaacttttggtgc 41206924  T
Q  248 attatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctca 298  Q
     ||||| ||| || ||||||||||||| |||||||||||||| || |||||    
T  41206923 cttatggccattgatgcgggcatggctcggagtggtaggggttgactctca 41206873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 48 - 298
Target Start/End: Complemental strand, 15917761 - 15917511
Alignment:
Q  48 aatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctacaaaaaataatttggcaa 147  Q
    ||||| |||||||||| ||||||| |||||||||| ||||| | ||||||||||||| ||||  |||  ||||| ||||||||||||  |||||||||||    
T  15917761 aatattgagttaatttcgcataaataggttcctctgaaagtctgtatccttgcttggggactgctgagggatcgtttacctacaaaagttaatttggcaa 15917662  T
Q  148 accgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgc 247  Q
    | ||||| ||| | |||||||| | || |||||||||  |||| |||||| | ||||||||||| |||||| ||||||||||||||  ||||||| | ||    
T  15917661 atcgtggtattattcctttggaagtgcggttgtgtgtcactggttgtgggcatgttgaagatgtgaatcatatgtttttgtcttgtccaacttttggcgc 15917562  T
Q  248 attatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctca 298  Q
     || || ||| |||||| |||||||||  | || |||||||||| ||||||    
T  15917561 gttgtggccattggtgcaggcatggctcagtgttgtaggggtcggttctca 15917511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 48 - 297
Target Start/End: Complemental strand, 12645643 - 12645394
Alignment:
Q  48 aatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctacaaaaaataatttggcaa 147  Q
    |||||||||||||||||||||||||||||| |||| ||||| || |||||||||||||| || ||||  ||||| |||||||||||| | |||||| ||     
T  12645643 aatatggagttaatttggcataaacaggtttctctaaaagtttcaatccttgcttggcggctattgagggatcgcttacctacaaaatacaatttgacag 12645544  T
Q  148 accgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgc 247  Q
    | ||  | ||| ||||||||||||| | ||| |||||| | || |||||| | ||||||||||| | ||||||||||||||||||   || |||| | ||    
T  12645543 atcgcagaattctacctttggaggctcggttttgtgttacagggtgtgggcatgttgaagatgtgactcatttgtttttgtcttgcccaatttttggcgc 12645444  T
Q  248 attatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctc 297  Q
    ||| || || ||||||||||| ||||| || || | |||||| |||||||    
T  12645443 attgtggcctatggtgcgggcttggcttggtgtcgaaggggtagattctc 12645394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 48 - 232
Target Start/End: Original strand, 17764995 - 17765179
Alignment:
Q  48 aatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctacaaaaaataatttggcaa 147  Q
    |||||||||||||| ||||||||||||| |||||| ||||| ||||| ||||||||||| || ||||  ||||  |||||||| |||   ||||||||||    
T  17764995 aatatggagttaatatggcataaacaggctcctcttaaagtctctattcttgcttggcggctattgagggatcatttacctacgaaagcaaatttggcaa 17765094  T
Q  148 accgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttg 232  Q
    ||||||| ||  | ||||||||||||| |||||||||  |||| |||||  |||| |||||||| ||||| ||||||||||||||    
T  17765095 accgtggtatcattcctttggaggcgcggttgtgtgtcactggttgtggtcacgtggaagatgtgaatcacttgtttttgtcttg 17765179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 50 - 233
Target Start/End: Complemental strand, 28252825 - 28252642
Alignment:
Q  50 tatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctacaaaaaataatttggcaaac 149  Q
    |||||| |||||||||||||||||||| ||||| ||||||||||| ||||||||||| |||||||  ||||| |||||||| ||    ||||||||||||    
T  28252825 tatggaattaatttggcataaacaggtacctctaaaagtatctattcttgcttggcggcttttgagggatcgcttacctacgaagggaaatttggcaaac 28252726  T
Q  150 cgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgt 233  Q
    | ||||||| | | | |||||| || ||| |||||||| || |||||  | | ||||||||| |||||||||||||||||||||    
T  28252725 catggcattattcatatggaggggcggttatgtgtttccggttgtggtcatgatgaagatgtgaatcatttgtttttgtcttgt 28252642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 50 - 298
Target Start/End: Complemental strand, 14439857 - 14439610
Alignment:
Q  50 tatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctacaaaaaataatttggcaaac 149  Q
    |||||||||||| |||||||||||||||||| | ||||| |||||| | ||||| ||||| ||||  ||||| |||||||| |||   ||||||| | |     
T  14439857 tatggagttaatctggcataaacaggttcctttaaaagtttctatcttggcttgacgactgttgagggatcgtttacctactaaatcaaatttggtagaa 14439758  T
Q  150 cgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgcat 249  Q
    ||||| ||| || || |||| || | ||| | |||  | ||||||||| | ||||||||||| ||||||||| |||||||||||  || ||||  |||||    
T  14439757 cgtgggattctatctgtggaagctcggttttatgtaacgggatgtgggtaggttgaagatgtgaatcatttg-ttttgtcttgtccaatttttgatgcat 14439659  T
Q  250 tatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctca 298  Q
    | || || ||||||||||| ||||| || || | |||||| ||||||||    
T  14439658 tgtggcctatggtgcgggcttggcttggtgtcgaaggggtagattctca 14439610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 48 - 298
Target Start/End: Original strand, 10999984 - 11000233
Alignment:
Q  48 aatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctacaaaaaataatttggcaa 147  Q
    |||||||||||||| || |||||||||||| || | ||||| ||||||||||||||| | || || |  ||||| || ||||| |||   |||||||||     
T  10999984 aatatggagttaatctgccataaacaggtttctttaaaagtttctatccttgcttggtggctgtt-agggatcgtttgcctactaaatcaaatttggcag 11000082  T
Q  148 accgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgtcttgtgtaacttttagtgc 247  Q
    | ||||| ||| || || |||| || | ||| |||||  | | ||||||| | ||||||||||| ||||||||||| || ||||||  || |||| ||||    
T  11000083 aacgtgggattctatctgtggaagctcggttttgtgtaacggaatgtgggcatgttgaagatgtgaatcatttgttcttatcttgtccaatttttggtgc 11000182  T
Q  248 attatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctca 298  Q
    ||| || || ||||||||||||||||| || || | |||||| ||||||||    
T  11000183 attgtggcctatggtgcgggcatggcttggtgtcgaaggggtagattctca 11000233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 48 - 228
Target Start/End: Original strand, 38604407 - 38604587
Alignment:
Q  48 aatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaagatcggttacctacaaaaaataatttggcaa 147  Q
    |||||||||||||| ||||||||||| || ||||| ||||| || |||||||| ||||  || || | |||||| |||||||||| |   |||||||||     
T  38604407 aatatggagttaatctggcataaacaagtacctctaaaagtttcaatccttgcatggctgctgttaagagatcgtttacctacaatagtcaatttggcat 38604506  T
Q  148 accgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatcatttgtttttgt 228  Q
    | ||||||||  | |   ||||||| | ||| ||||| || || |||||| | ||||||||||| |||||| |||||||||    
T  38604507 atcgtggcatccttctcatggaggctcggttatgtgtctcaggctgtgggcatgttgaagatgtaaatcatgtgtttttgt 38604587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 409 - 454
Target Start/End: Original strand, 11457585 - 11457630
Alignment:
Q  409 gcgcgtgagaagggcatagggtgggaaaaataatagtcataaatta 454  Q
    ||||||||||||   |||||||| ||||||||||||||||||||||    
T  11457585 gcgcgtgagaagtagatagggtgagaaaaataatagtcataaatta 11457630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 154; Significance: 3e-81; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 17 - 306
Target Start/End: Original strand, 105845 - 106134
Alignment:
Q  17 gacatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaa 116  Q
    ||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||  |||      
T  105845 gacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagg 105944  T
Q  117 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgttaatc 216  Q
    ||||||||||||||||||  |||||||||||| ||||||||| || || |||||| || ||| || ||| ||||||||||||  || |||||||||| ||    
T  105945 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgcgttgctggatgtgggattgtcgaagatgttactc 106044  T
Q  217 atttgtttttgtcttgtgtaacttttagtgcattatgaccaatggtgcgggcatggctaggagtggtaggggtcgattctcaatcaactt 306  Q
    |||||||||||||||||| ||||||| |||||||||| || |||||||||   ||| ||||||||||||| ||||| |||||||||||||    
T  106045 atttgtttttgtcttgtgcaacttttggtgcattatggccgatggtgcggcattggttaggagtggtaggtgtcgactctcaatcaactt 106134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0524 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 319 - 442
Target Start/End: Original strand, 6432 - 6554
Alignment:
Q  319 ctacgaagctgtcctgattatgtaatccgaaaactattgggaatttccggattttgttttccaaagggctattttgtannnnnnngcagagcgcgtgaga 418  Q
    |||||||||||||| |||||||||||||| |||| |||  |||||| |||||||||| |||  |  ||||||||||||       |||| || |||||||    
T  6432 ctacgaagctgtccggattatgtaatccggaaacgattttgaatttacggattttgtattctgataggctattttgta-atttttgcagggcacgtgaga 6530  T
Q  419 agggcatagggtgggaaaaataat 442  Q
    ||||||||||||||||||| ||||    
T  6531 agggcatagggtgggaaaagtaat 6554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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