View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11819_low_10 (Length: 551)
Name: NF11819_low_10
Description: NF11819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11819_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 475; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 1 - 527
Target Start/End: Complemental strand, 38390674 - 38390147
Alignment:
| Q |
1 |
tgaaaaaagctttcgctagtcctaccagcatctcccctgtttttcacattatcaatttgtggtgatttatcatattcatatcaatcatgatatacttcaa |
100 |
Q |
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| T |
38390674 |
tgaaaaaagctttcgctagtcctaccagcatctcccctgtttttcacattatcaatttgtggtgatttatcatattcatatcaatcatgatatacttcaa |
38390575 |
T |
|
| Q |
101 |
catagataggattccataagtttgtatgcttctttcataggttgtatgttctttaatttccaaaa-caacatgtttcctgcggcaaatacaataacagca |
199 |
Q |
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| T |
38390574 |
catagataggattccataagtttgtatgcttctttcataggttgtatattctttaatttccaaaaacaacatgtttcctgcggcaaatacaataacagca |
38390475 |
T |
|
| Q |
200 |
acaacaacaaaagtgaaaaactggaagaatgtcaggttggaaatttccgggggtagggcatcaacaagaacaagatatgcagattgaagagtcataactg |
299 |
Q |
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| T |
38390474 |
acaacaacaaaagtgaaaaactggaagaatgtcaggttggaaatttccgggggtagggcatcaacaagaacaagatatgcagattgaagagtcataactg |
38390375 |
T |
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| Q |
300 |
tgtggaatgcgatagaagcacatcaagatttaaaggacacatactcttcgagggacatattgtgtacccggcgtccgtgtgagcatgtgcttggnnnnnn |
399 |
Q |
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| T |
38390374 |
tgtgcaatgcgatagaagcacatcaagatttaaaggacacatactcttcgagggacatattgtgtacccggcgtccgtgtaagcatgtgcttggtttttt |
38390275 |
T |
|
| Q |
400 |
ngcttcaatgggttttgtatgcctcgagagaaaagctgtgaaagtaagtacaacgttatgatcttctttttacacgattagaagataatgagttttaata |
499 |
Q |
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| T |
38390274 |
tgcttcaatgggttttgtatgcctcgagagaaaagctgtgaaagtaagtataacgttatgatcttctttttacatgattagaagataatgagttttaata |
38390175 |
T |
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| Q |
500 |
gtttcattgttggttattaatatgtggt |
527 |
Q |
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| T |
38390174 |
gtttcatttttggttattaatatgtggt |
38390147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 297 - 392
Target Start/End: Complemental strand, 38390878 - 38390784
Alignment:
| Q |
297 |
ctgtgtggaatgcgatagaagcacatcaagatttaaaggacacatactcttcgagggacatattgtgtacccggcgtccgtgtgagcatgtgcttg |
392 |
Q |
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| T |
38390878 |
ctgtgtgcaatgcaatagaagcacatcatgctttaaaggaaacatactctctgagggacatattgtgtactagg-gttcatgtgagcatgtgcttg |
38390784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 520
Target Start/End: Original strand, 38389554 - 38389597
Alignment:
| Q |
477 |
ttagaagataatgagttttaatagtttcattgttggttattaat |
520 |
Q |
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| T |
38389554 |
ttagaatataatgagttttaatagtttaatttttggttattaat |
38389597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 401 - 439
Target Start/End: Original strand, 38389459 - 38389497
Alignment:
| Q |
401 |
gcttcaatgggttttgtatgcctcgagagaaaagctgtg |
439 |
Q |
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| T |
38389459 |
gcttcaatgggttttgtatgccttgagagaaaagttgtg |
38389497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 477 - 527
Target Start/End: Original strand, 38390918 - 38390968
Alignment:
| Q |
477 |
ttagaagataatgagttttaatagtttcattgttggttattaatatgtggt |
527 |
Q |
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|||||| |||||||||||||||||||| ||| || ||||||| |||||||| |
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| T |
38390918 |
ttagaacataatgagttttaatagtttaattttttgttattattatgtggt |
38390968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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