View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11819_low_12 (Length: 512)

Name: NF11819_low_12
Description: NF11819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11819_low_12
NF11819_low_12
[»] chr2 (8 HSPs)
chr2 (1-434)||(132449-132882)
chr2 (316-435)||(45336357-45336476)
chr2 (316-435)||(45338669-45338788)
chr2 (286-435)||(1453994-1454144)
chr2 (316-435)||(17648969-17649088)
chr2 (335-435)||(14662448-14662548)
chr2 (184-324)||(17648814-17648954)
chr2 (230-333)||(14662319-14662422)
[»] chr8 (2 HSPs)
chr8 (316-435)||(44734250-44734369)
chr8 (319-435)||(44731942-44732058)
[»] chr4 (3 HSPs)
chr4 (316-435)||(22804709-22804828)
chr4 (230-324)||(7231025-7231117)
chr4 (316-415)||(7230912-7231010)
[»] chr3 (9 HSPs)
chr3 (316-435)||(48023927-48024047)
chr3 (316-435)||(28784611-28784730)
chr3 (316-415)||(5354559-5354658)
chr3 (316-415)||(48707642-48707741)
chr3 (184-333)||(48027344-48027493)
chr3 (184-304)||(48025193-48025313)
chr3 (330-404)||(5913484-5913558)
chr3 (184-304)||(48024082-48024202)
chr3 (184-304)||(48024633-48024753)
[»] chr5 (2 HSPs)
chr5 (316-435)||(32798104-32798223)
chr5 (316-435)||(32800416-32800535)
[»] chr1 (2 HSPs)
chr1 (316-435)||(1550254-1550373)
chr1 (316-435)||(9535353-9535472)
[»] chr7 (4 HSPs)
chr7 (316-435)||(13108750-13108870)
chr7 (316-428)||(13111050-13111163)
chr7 (184-333)||(13111169-13111318)
chr7 (230-323)||(13108886-13108979)
[»] chr6 (1 HSPs)
chr6 (316-428)||(6723561-6723675)


Alignment Details
Target: chr2 (Bit Score: 418; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Original strand, 132449 - 132882
Alignment:
Q  1 cataacataactataaaccctgttggatgtctttttctaattggtaacattttggccgacattgtaattttcacttgcaaaaccaggtgtggcaaggaga 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  132449 cataacataactataaaccctgtgggatgtctttttctaattggtaacattttggccgacattgtaattttcacttgcaaaaccaggtgtggcaaggaga 132548  T
Q  101 gtcggatcataatactaaattaaagtttttagttgaatatatttgatatgttgttactaattctttgtttcagattgttggaatggagattgagattttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  132549 gtcggatcataatactaaattaaagtttttagttgaatatatttgatatgttgttactaattctttgtttcagattgttggaatggagattgagattttt 132648  T
Q  201 ctgttttattaattattttttgctgcttatttctgtaaaaattagattgttgcttgtttttaagtaagtgtcataattaggtagctgcttatttattaag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  132649 ctgttttattaattattttttgctgcttatttctgtaaaaattagattgttgcttgtttttaagtaagtgtcataattaggtagctgcttatttattaag 132748  T
Q  301 taaagtagtcactaagtaatgatggctagtgtttagagtagatttattgcagattttattttcagtcttacaggcagacttatggcttgcctctatatat 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  132749 taaagtagtcactaagtaatgatggctagtgtttagagtagatttattgcagatttgattttcagtcttacaggcagacttatggcttgcctctatatat 132848  T
Q  401 ttgtagtgtatgcttcagtataatgtattaaagt 434  Q
    ||||||||||||||||||| | ||||||||||||    
T  132849 ttgtagtgtatgcttcagtttgatgtattaaagt 132882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 316 - 435
Target Start/End: Original strand, 45336357 - 45336476
Alignment:
Q  316 gtaatgatggctagtgtttagagtagatttattgcagattttattttcagtcttacaggcagacttatggcttgcctctatatatttgtagtgtatgctt 415  Q
    ||||||||| ||||||||||||||||||||| |||||||||||| || ||||||||| |||  ||||||||||| ||||||||||||||| |||||||||    
T  45336357 gtaatgatgactagtgtttagagtagatttagtgcagattttatgtttagtcttacaagcaagcttatggcttggctctatatatttgtattgtatgctt 45336456  T
Q  416 cagtataatgtattaaagta 435  Q
     ||| |||||||| ||||||    
T  45336457 aagtttaatgtatcaaagta 45336476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 316 - 435
Target Start/End: Original strand, 45338669 - 45338788
Alignment:
Q  316 gtaatgatggctagtgtttagagtagatttattgcagattttattttcagtcttacaggcagacttatggcttgcctctatatatttgtagtgtatgctt 415  Q
    ||||||||| ||||||||||||||||||||| |||||||||||| || ||||||||| |||  ||||||||||| ||||||||||||||| |||||||||    
T  45338669 gtaatgatgactagtgtttagagtagatttagtgcagattttatgtttagtcttacaagcaagcttatggcttggctctatatatttgtattgtatgctt 45338768  T
Q  416 cagtataatgtattaaagta 435  Q
     ||| |||||||| ||||||    
T  45338769 aagtttaatgtatcaaagta 45338788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 286 - 435
Target Start/End: Original strand, 1453994 - 1454144
Alignment:
Q  286 tgcttatttattaagtaaagtagtcactaagtaatgatggctagtgtttagagtagatttattgcaga-ttttattttcagtcttacaggcagacttatg 384  Q
    ||||| |||| ||||||||| |||| |||  |||||||| |||||||||| | |||||||| |||||| ||||||||||| | ||||| | |  ||||||    
T  1453994 tgcttgtttagtaagtaaagaagtccctagataatgatgactagtgtttaaaatagatttactgcagagttttattttcaattttacaagaaagcttatg 1454093  T
Q  385 gcttgcctctatatatttgtagtgtatgcttcagtataatgtattaaagta 435  Q
    ||||| ||||||||||||||||||||||||||||| |||||||| ||||||    
T  1454094 gcttggctctatatatttgtagtgtatgcttcagtttaatgtatcaaagta 1454144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 316 - 435
Target Start/End: Original strand, 17648969 - 17649088
Alignment:
Q  316 gtaatgatggctagtgtttagagtagatttattgcagattttattttcagtcttacaggcagacttatggcttgcctctatatatttgtagtgtatgctt 415  Q
    ||||||||| ||||||||||||||||||||| |||| ||||||| |||| ||||||| |||  ||||||||||| ||||||||||||||  |||||||||    
T  17648969 gtaatgatgactagtgtttagagtagatttagtgcatattttatgttcaatcttacaagcaagcttatggcttggctctatatatttgttatgtatgctt 17649068  T
Q  416 cagtataatgtattaaagta 435  Q
    |||   ||||||| ||||||    
T  17649069 cagctaaatgtatcaaagta 17649088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 335 - 435
Target Start/End: Original strand, 14662448 - 14662548
Alignment:
Q  335 agagtagatttattgcagattttattttcagtcttacaggcagacttatggcttgcctctatatatttgtagtgtatgcttcagtataatgtattaaagt 434  Q
    |||||||||||  ||||||| |||| |||||| ||||| |||   |||||||||| ||||||||||||||||||||||||||||| |||||||| |||||    
T  14662448 agagtagatttcgtgcagatcttatgttcagttttacaagcaagtttatggcttggctctatatatttgtagtgtatgcttcagtttaatgtatcaaagt 14662547  T
Q  435 a 435  Q
    |    
T  14662548 a 14662548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 184 - 324
Target Start/End: Original strand, 17648814 - 17648954
Alignment:
Q  184 tggagattgagatttttctgttttattaatta-ttttttgctgct-tatttctgtaaaaattagattgttgcttgtttttaagtaagtgtcataattagg 281  Q
    |||||||||| ||||||||||||| ||||||| || | ||||||| | ||||||| | |||||| ||||||||||  ||||||| | ||||||||||||     
T  17648814 tggagattgatatttttctgttttgttaattacttgtgtgctgctgtttttctgtcataattagcttgttgcttg--tttaagttaatgtcataattaga 17648911  T
Q  282 tagctgcttatttattaagtaaagtagtcactaagtaatgatg 324  Q
    | | |||||||| | || ||||| |||||  || |||||||||    
T  17648912 ttgttgcttattaagtatgtaaaatagtccttaggtaatgatg 17648954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 333
Target Start/End: Original strand, 14662319 - 14662422
Alignment:
Q  230 tttctgtaaaaattagattgttgcttgtttttaagtaagtgtcataattaggtagctgcttatttattaagtaaagtagtcactaagtaatgatggctag 329  Q
    ||||||| | ||||| | |||||||||||| |   |||||||||||||||| | | |||||||||| ||||||||  |||| ||| ||||||||| |||     
T  14662319 tttctgtcataattaaagtgttgcttgtttatgtataagtgtcataattagatcgttgcttatttagtaagtaaaacagtccctaggtaatgatgtctat 14662418  T
Q  330 tgtt 333  Q
    ||||    
T  14662419 tgtt 14662422  T

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Target: chr8 (Bit Score: 76; Significance: 6e-35; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 316 - 435
Target Start/End: Original strand, 44734250 - 44734369
Alignment:
Q  316 gtaatgatggctagtgtttagagtagatttattgcagattttattttcagtcttacaggcagacttatggcttgcctctatatatttgtagtgtatgctt 415  Q
    ||||||||| ||||||||||||||||||||| |||||||||||| || ||||||||| |||  ||||||||||| |||||||||||||||||||||||||    
T  44734250 gtaatgatgactagtgtttagagtagatttagtgcagattttatgtttagtcttacaagcaagcttatggcttgactctatatatttgtagtgtatgctt 44734349  T
Q  416 cagtataatgtattaaagta 435  Q
     ||| |||||||| ||||||    
T  44734350 aagtttaatgtatcaaagta 44734369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 319 - 435
Target Start/End: Original strand, 44731942 - 44732058
Alignment:
Q  319 atgatggctagtgtttagagtagatttattgcagattttattttcagtcttacaggcagacttatggcttgcctctatatatttgtagtgtatgcttcag 418  Q
    |||||| ||||||||||||||||||||| |||||||||||| || ||||||||| |||  ||||||||||| ||||||||||||||||||||||||| ||    
T  44731942 atgatgactagtgtttagagtagatttagtgcagattttatgtttagtcttacaagcaagcttatggcttgactctatatatttgtagtgtatgcttaag 44732041  T
Q  419 tataatgtattaaagta 435  Q
    | |||||||| ||||||    
T  44732042 tttaatgtatcaaagta 44732058  T

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Target: chr4 (Bit Score: 76; Significance: 6e-35; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 316 - 435
Target Start/End: Original strand, 22804709 - 22804828
Alignment:
Q  316 gtaatgatggctagtgtttagagtagatttattgcagattttattttcagtcttacaggcagacttatggcttgcctctatatatttgtagtgtatgctt 415  Q
    ||||||||| ||||||||||||||||||||| |||||||||||| || |||||||||  ||||||||||||||| |||||||||||||||||||||| ||    
T  22804709 gtaatgatgactagtgtttagagtagatttaatgcagattttatgtttagtcttacaaacagacttatggcttggctctatatatttgtagtgtatgttt 22804808  T
Q  416 cagtataatgtattaaagta 435  Q
     ||| |||||||| ||||||    
T  22804809 aagtttaatgtatcaaagta 22804828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 230 - 324
Target Start/End: Complemental strand, 7231117 - 7231025
Alignment:
Q  230 tttctgtaaaaattagattgttgcttgtttttaagtaagtgtcataattaggtagctgcttatttattaagtaaagtagtcactaagtaatgatg 324  Q
    ||||||| | ||||||||||||||||||||  |||| |||||||||||||| | |||||||||||| ||||||||||||||  || |||||||||    
T  7231117 tttctgtcataattagattgttgcttgttt--aagttagtgtcataattagattgctgcttatttagtaagtaaagtagtccgtaggtaatgatg 7231025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 316 - 415
Target Start/End: Complemental strand, 7231010 - 7230912
Alignment:
Q  316 gtaatgatggctagtgtttagagtagatttattgcagattttattttcagtcttacaggcagacttatggcttgcctctatatatttgtagtgtatgctt 415  Q
    ||||||||| ||||||||||||| ||||||| |||||||||||| |||| |||| || | |   |||||||||| |||||||| |||||  |||||||||    
T  7231010 gtaatgatgactagtgtttagagcagatttagtgcagattttatgttcaatcttccaagaaagtttatggcttggctctatat-tttgttatgtatgctt 7230912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 4e-33; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 316 - 435
Target Start/End: Complemental strand, 48024047 - 48023927
Alignment:
Q  316 gtaatgatggctagtgttta-gagtagatttattgcagattttattttcagtcttacaggcagacttatggcttgcctctatatatttgtagtgtatgct 414  Q
    ||||||||| |||||| ||| ||||||||||| |||||||||||| |||||||||||| |||  ||||||||||| ||||||||||||||||||||||||    
T  48024047 gtaatgatgactagtgcttaagagtagatttagtgcagattttatgttcagtcttacaagcaagcttatggcttgactctatatatttgtagtgtatgct 48023948  T
Q  415 tcagtataatgtattaaagta 435  Q
    ||||| |||||||| ||||||    
T  48023947 tcagtttaatgtataaaagta 48023927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 316 - 435
Target Start/End: Original strand, 28784611 - 28784730
Alignment:
Q  316 gtaatgatggctagtgtttagagtagatttattgcagattttattttcagtcttacaggcagacttatggcttgcctctatatatttgtagtgtatgctt 415  Q
    ||||||||| ||||||||||||||||||||| |||||||||||| || ||||||||| |||  |||||||||||  ||||||||||||||||||||||||    
T  28784611 gtaatgatgactagtgtttagagtagatttagtgcagattttatgtttagtcttacaagcaagcttatggcttgattctatatatttgtagtgtatgctt 28784710  T
Q  416 cagtataatgtattaaagta 435  Q
     ||| |||||||| ||||||    
T  28784711 aagtttaatgtatcaaagta 28784730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 316 - 415
Target Start/End: Complemental strand, 5354658 - 5354559
Alignment:
Q  316 gtaatgatggctagtgtttagagtagatttattgcagattttattttcagtcttacaggcagacttatggcttgcctctatatatttgtagtgtatgctt 415  Q
    ||||| ||| ||||||||||||||||||||| |||||||||||| || ||||||||| | |  ||||||||||| |||||||||||||||||||||||||    
T  5354658 gtaataatgactagtgtttagagtagatttagtgcagattttatgtttagtcttacaagtaagcttatggcttggctctatatatttgtagtgtatgctt 5354559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 316 - 415
Target Start/End: Complemental strand, 48707741 - 48707642
Alignment:
Q  316 gtaatgatggctagtgtttagagtagatttattgcagattttattttcagtcttacaggcagacttatggcttgcctctatatatttgtagtgtatgctt 415  Q
    ||||||||| |||||||||| |||||||||| || ||||||||| || ||||||||| |||  ||||||||||| |||||||||||||||||||||||||    
T  48707741 gtaatgatgactagtgtttaaagtagatttagtgtagattttatgtttagtcttacaagcaagcttatggcttgactctatatatttgtagtgtatgctt 48707642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 184 - 333
Target Start/End: Complemental strand, 48027493 - 48027344
Alignment:
Q  184 tggagattgagatttttctgttttattaattattttttgctgcttatttctgtaaaaattagattgttgcttgtttttaagtaagtgtcataattaggta 283  Q
    |||||||||| ||||||||||||| ||||||||||||| ||||   ||||||  | ||||  | |||||||||||| |   |||||||||||||||| |     
T  48027493 tggagattgatatttttctgttttgttaattattttttactgccgttttctgccataatttaagtgttgcttgtttatgtataagtgtcataattagatt 48027394  T
Q  284 gctgcttatttattaagtaaagtagtcactaagtaatgatggctagtgtt 333  Q
    | |||||||||| ||||||||  |||| ||| ||||||||| ||| ||||    
T  48027393 gttgcttatttagtaagtaaaacagtccctaggtaatgatgtctattgtt 48027344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 184 - 304
Target Start/End: Complemental strand, 48025313 - 48025193
Alignment:
Q  184 tggagattgagatttttctgttttattaattattttttgctgcttatttctgtaaaaattagattgttgcttgtttttaagtaagtgtcataattaggta 283  Q
    |||||||||| ||||||||||||| ||||||||||| | |||||  ||||||| | ||||| | |||||||||||| |   ||| |||||||||||| |     
T  48025313 tggagattgatatttttctgttttgttaattattttctactgctgttttctgtcataattaaagtgttgcttgtttatgtataaatgtcataattagatt 48025214  T
Q  284 gctgcttatttattaagtaaa 304  Q
    | |||||||||| ||||||||    
T  48025213 gttgcttatttagtaagtaaa 48025193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 330 - 404
Target Start/End: Original strand, 5913484 - 5913558
Alignment:
Q  330 tgtttagagtagatttattgcagattttattttcagtcttacaggcagacttatggcttgcctctatatatttgt 404  Q
    ||||||||||||||||| |||||||||||| |||| ||||||| |||  ||||||| ||| ||||||||||||||    
T  5913484 tgtttagagtagatttaatgcagattttatgttcaatcttacaagcaagcttatggtttgactctatatatttgt 5913558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 184 - 304
Target Start/End: Complemental strand, 48024202 - 48024082
Alignment:
Q  184 tggagattgagatttttctgttttattaattattttttgctgcttatttctgtaaaaattagattgttgcttgtttttaagtaagtgtcataattaggta 283  Q
    |||||||||| |||||||| |||| ||||||||||| | |||||  ||||||| | ||||| | |||| ||||||| |   |||||||||||||||| |     
T  48024202 tggagattgatatttttctcttttgttaattattttctactgctgttttctgtcataattaaagtgttacttgtttatgtataagtgtcataattagatt 48024103  T
Q  284 gctgcttatttattaagtaaa 304  Q
    | |||||||||| ||||||||    
T  48024102 gttgcttatttagtaagtaaa 48024082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 184 - 304
Target Start/End: Complemental strand, 48024753 - 48024633
Alignment:
Q  184 tggagattgagatttttctgttttattaattattttttgctgcttatttctgtaaaaattagattgttgcttgtttttaagtaagtgtcataattaggta 283  Q
    |||||||||| |||||| |||||| ||||||||||| | |||||  ||||||| | ||||| | |||||| ||||| |   |||||||||||||||| |     
T  48024753 tggagattgatatttttatgttttgttaattattttctactgctgttttctgtcataattaaaatgttgcatgtttatgtataagtgtcataattagatt 48024654  T
Q  284 gctgcttatttattaagtaaa 304  Q
    | |||||||||| ||||||||    
T  48024653 gttgcttatttagtaagtaaa 48024633  T

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Target: chr5 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 316 - 435
Target Start/End: Original strand, 32798104 - 32798223
Alignment:
Q  316 gtaatgatggctagtgtttagagtagatttattgcagattttattttcagtcttacaggcagacttatggcttgcctctatatatttgtagtgtatgctt 415  Q
    ||||||||| ||||||||||||||||||||| |||||||||||| || ||||||||| |||  ||||||||||| ||||||||||||||| |||||||||    
T  32798104 gtaatgatgactagtgtttagagtagatttagtgcagattttatgtttagtcttacaagcaagcttatggcttggctctatatatttgtattgtatgctt 32798203  T
Q  416 cagtataatgtattaaagta 435  Q
     ||| |||||||| ||||||    
T  32798204 aagtttaatgtatcaaagta 32798223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 316 - 435
Target Start/End: Original strand, 32800416 - 32800535
Alignment:
Q  316 gtaatgatggctagtgtttagagtagatttattgcagattttattttcagtcttacaggcagacttatggcttgcctctatatatttgtagtgtatgctt 415  Q
    ||||||||| ||||||||||||||||||||| |||||||||||| || ||||||||| |||  ||||||||||| ||||||||||||||| |||||||||    
T  32800416 gtaatgatgactagtgtttagagtagatttagtgcagattttatgtttagtcttacaagcaagcttatggcttggctctatatatttgtattgtatgctt 32800515  T
Q  416 cagtataatgtattaaagta 435  Q
     ||| |||||||| ||||||    
T  32800516 aagtttaatgtatcaaagta 32800535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 316 - 435
Target Start/End: Original strand, 1550254 - 1550373
Alignment:
Q  316 gtaatgatggctagtgtttagagtagatttattgcagattttattttcagtcttacaggcagacttatggcttgcctctatatatttgtagtgtatgctt 415  Q
    ||||||||| ||||||||||||||||||||| |||||||||||| || ||||||||| |||  ||||||||||| ||||||||||||||| |||||||||    
T  1550254 gtaatgatgactagtgtttagagtagatttagtgcagattttatgtttagtcttacaagcaagcttatggcttggctctatatatttgtaatgtatgctt 1550353  T
Q  416 cagtataatgtattaaagta 435  Q
     ||| |||||||| ||||||    
T  1550354 aagtttaatgtatcaaagta 1550373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 316 - 435
Target Start/End: Original strand, 9535353 - 9535472
Alignment:
Q  316 gtaatgatggctagtgtttagagtagatttattgcagattttattttcagtcttacaggcagacttatggcttgcctctatatatttgtagtgtatgctt 415  Q
    ||||||||| ||||||||||||||||||||| || ||||||||| || ||||||||| |||   |||||||||| |||||||||||||||||||||| ||    
T  9535353 gtaatgatgactagtgtttagagtagatttagtgtagattttatgtttagtcttacaagcaagtttatggcttgactctatatatttgtagtgtatgttt 9535452  T
Q  416 cagtataatgtattaaagta 435  Q
     ||| |||||||| ||||||    
T  9535453 aagtttaatgtatcaaagta 9535472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 6e-26; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 316 - 435
Target Start/End: Complemental strand, 13108870 - 13108750
Alignment:
Q  316 gtaatgatggctagtgttta-gagtagatttattgcagattttattttcagtcttacaggcagacttatggcttgcctctatatatttgtagtgtatgct 414  Q
    ||||||||| |||||| ||| |||||||||||   || ||||||| |||||||||||| ||| |||||||||||| ||| ||||||||||||||||||||    
T  13108870 gtaatgatgactagtgcttaagagtagatttagaacatattttatattcagtcttacaagcaaacttatggcttgactccatatatttgtagtgtatgct 13108771  T
Q  415 tcagtataatgtattaaagta 435  Q
    ||||| |||||||| ||||||    
T  13108770 tcagtttaatgtatcaaagta 13108750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 316 - 428
Target Start/End: Complemental strand, 13111163 - 13111050
Alignment:
Q  316 gtaatgatggctagtgttta-gagtagatttattgcagattttattttcagtcttacaggcagacttatggcttgcctctatatatttgtagtgtatgct 414  Q
    ||||||||| |||||| ||| ||||||||||| |||| |||||||  ||| ||||||| |||  ||||||||||| ||| ||||||||||| | ||||||    
T  13111163 gtaatgatgactagtgcttaagagtagatttagtgcaaattttatgctcactcttacaagcaagcttatggcttggctcaatatatttgtattttatgct 13111064  T
Q  415 tcagtataatgtat 428  Q
    ||||| ||||||||    
T  13111063 tcagtttaatgtat 13111050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 184 - 333
Target Start/End: Complemental strand, 13111318 - 13111169
Alignment:
Q  184 tggagattgagatttttctgttttattaattattttttgctgcttatttctgtaaaaattagattgttgcttgtttttaagtaagtgtcataattaggta 283  Q
    |||||||||| ||||||||||||| ||||||| ||||| |||||  ||||||| | ||||| | |||||||||||| |    ||||| ||||||||| |     
T  13111318 tggagattgatatttttctgttttgttaattactttttactgctgttttctgtcataattaaagtgttgcttgtttatgtagaagtgccataattagatt 13111219  T
Q  284 gctgcttatttattaagtaaagtagtcactaagtaatgatggctagtgtt 333  Q
    | |||||||||| |||||||| ||||| ||| ||||| ||| ||| ||||    
T  13111218 gttgcttatttagtaagtaaaatagtccctaggtaataatgtctattgtt 13111169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 323
Target Start/End: Complemental strand, 13108979 - 13108886
Alignment:
Q  230 tttctgtaaaaattagattgttgcttgtttttaagtaagtgtcataattaggtagctgcttatttattaagtaaagtagtcactaagtaatgat 323  Q
    ||||||| | ||||| | |||||||||||| |   |||||||||||||||| | | |||||||||| ||||||||  |||| ||| ||||||||    
T  13108979 tttctgtcataattaaagtgttgcttgtttatttataagtgtcataattagattgttgcttatttagtaagtaaaacagtccctaggtaatgat 13108886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 316 - 428
Target Start/End: Original strand, 6723561 - 6723675
Alignment:
Q  316 gtaatgatggctagtgtttagagtagatttattgcagattttattt--tcagtcttacaggcagacttatggcttgcctctatatatttgtagtgtatgc 413  Q
    ||||||||| || |||||||||||||||||| | || ||||||| |  | |||||||||  || ||||||| |||| |||||||||||| |||||||||     
T  6723561 gtaatgatgactcgtgtttagagtagatttaatacaaattttatatgttgagtcttacaaacaaacttatgacttggctctatatatttatagtgtatga 6723660  T
Q  414 ttcagtataatgtat 428  Q
    || ||| ||||||||    
T  6723661 tttagtttaatgtat 6723675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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