View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11819_low_13 (Length: 460)
Name: NF11819_low_13
Description: NF11819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11819_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Complemental strand, 45729143 - 45728689
Alignment:
| Q |
1 |
tcttccatgtgtgtgttcttctctgttcttttctttgtcactactttgatttgtgtaattgctta---ataatgaaacttaatgctcagatatgtagggg |
97 |
Q |
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| T |
45729143 |
tcttccatgtgtgtgttcttctctgttcttttctttgtcactactttgatttgtgtaattgcttattaataatgaaacttaatgctcagatatgtagggg |
45729044 |
T |
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| Q |
98 |
ctatatatatnnnnnnn--tatttatattcgccatattcgttttccatggagaaatggagatattaacctgcaatgacgttgagctagcatatacaatgc |
195 |
Q |
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| T |
45729043 |
ctatatatataaaaaaaaatatttatattcgccatattcgttttccatggagaaatggagatatta--ctgcaatgacgttgagctagcatatacaatgc |
45728946 |
T |
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| Q |
196 |
ttgtgtttcttaggataattatactaatatgataatgaagtttcatctgaaagtttaaacaatttgtaataaggaatacagttaatgcaatcaaa--tat |
293 |
Q |
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| T |
45728945 |
ttgtgtttcttaggataattatactaatatgataatgaagtttcatctgaaattttaaacaatttgtaataaggaatacagttgatgcaatcaaatatat |
45728846 |
T |
|
| Q |
294 |
aagaatccgaaatttcaaatatgcttgcttccttttcgcattgtaacc-aaaaagaaaatatgcttgcttcgactttgatcagtagaaataattggagtt |
392 |
Q |
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| T |
45728845 |
aagaatctgaaatttcaaatatgcttgcttcctttttgcattgtaaccaaaaaaaaaaaaatgcttgcttcgactttgatcagtagaaataattggagtt |
45728746 |
T |
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| Q |
393 |
ccgtgtggataatgtgggtggattcccatattg-atggttgaaggaaatggccgtct |
448 |
Q |
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| T |
45728745 |
ccgtgtggataatgtgggtggattcccatattgaatggttgaaggaaatggccgtct |
45728689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 45724925 - 45724870
Alignment:
| Q |
36 |
tgtcactactttgatttgtgtaattgcttaataatgaaacttaatgctcagatatg |
91 |
Q |
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| T |
45724925 |
tgtcactactttggtttgtgtgattgcttaataatgaaacttaatgctcacatatg |
45724870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 256 - 320
Target Start/End: Complemental strand, 45735108 - 45735044
Alignment:
| Q |
256 |
aatttgtaataaggaatacagttaatgcaatcaaatataagaatccgaaatttcaaatatgcttg |
320 |
Q |
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| T |
45735108 |
aatttgtaataagaaatacagctaatacaatcaaatataagaatctaaaattttaaatatgcttg |
45735044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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