View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11819_low_14 (Length: 451)
Name: NF11819_low_14
Description: NF11819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11819_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 50 - 436
Target Start/End: Complemental strand, 27252032 - 27251646
Alignment:
| Q |
50 |
tagtctccaagactataaaatattacacatttttgacaaattagtcttacagaataatattcatcctccgtcaacaccatcattaactgctagtgttgct |
149 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
27252032 |
tagtctccaagactataaaatattacacatttttgaataattagtcttacagaataatattcatcctccgtcaacaccatcattaactgctagtgctgct |
27251933 |
T |
|
| Q |
150 |
gtctaacataacatatatcatcatattcactaccaacatttttagtaagagtagcctttgacgaacaattccttcttggcttcctcggattcaccctcac |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27251932 |
gtctaacataacatatatcatcatattcactaccaacatttttagtaagagtagcctttgacgaacaattccttcttggcttcctcggattcaccctcac |
27251833 |
T |
|
| Q |
250 |
cagtgtactttccaagttgagcaattgagttggacttggcgcggaaaagaagcgcttcttgagctgccttcacgttctctacgcggcctccccatgtctt |
349 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27251832 |
cagtgtactttccaagttgagcaattgagttggacttggcgcggaaaagaagcgcttcttgagctgccttcacgttctctacgcggcctccccatgtctt |
27251733 |
T |
|
| Q |
350 |
caatgcggtattttggagagctcttgcgtatgagaacgacacgtgccatgggtttggagattggttcatggcattcaagttgagggt |
436 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27251732 |
caatgcggtattttggagagctcttgcgtatgagaacgacacgtgccatgggtttggagattggttcatggcattcaagttgagggt |
27251646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 50 - 436
Target Start/End: Complemental strand, 21196283 - 21195897
Alignment:
| Q |
50 |
tagtctccaagactataaaatattacacatttttgacaaattagtcttacagaataatattcatcctccgtcaacaccatcattaactgctagtgttgct |
149 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
21196283 |
tagtctccaagactataaaatattacacatttttgattaattagtcttacagaataatattcatcctccgtcaacaccatcattaactgctagtgctgct |
21196184 |
T |
|
| Q |
150 |
gtctaacataacatatatcatcatattcactaccaacatttttagtaagagtagcctttgacgaacaattccttcttggcttcctcggattcaccctcac |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
21196183 |
gtctaacataacatatatcatcatattcactaccaacatttttagtaagagtagcctttgacgaacaattccttcttggcttcttcggattcaccctcac |
21196084 |
T |
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| Q |
250 |
cagtgtactttccaagttgagcaattgagttggacttggcgcggaaaagaagcgcttcttgagctgccttcacgttctctacgcggcctccccatgtctt |
349 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21196083 |
cagtgtactttccaagttgagcaattgagttggacttggcgcggaaaagaagcgcttcttgagctgccttcacgttctctacgcggcctccccatgtctt |
21195984 |
T |
|
| Q |
350 |
caatgcggtattttggagagctcttgcgtatgagaacgacacgtgccatgggtttggagattggttcatggcattcaagttgagggt |
436 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21195983 |
caatgcggtattttggagagctcttgcgtatgagaacgacacgtgccatgggtttggagattggttcatggcattcaagttgagggt |
21195897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 195 - 433
Target Start/End: Complemental strand, 27268721 - 27268483
Alignment:
| Q |
195 |
taagagtagcctttgacgaacaattccttcttggcttcctcggattcaccctcaccagtgtactttccaagttgagcaattgagttggacttggcgcgga |
294 |
Q |
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|||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| || |||| |
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| T |
27268721 |
taagagtatcctttgacaaacaattccttcttggcttcctcagattcaccctcaccagtgtactttccaagttgagcaagtgagttggacttagcacgga |
27268622 |
T |
|
| Q |
295 |
aaagaagcgcttcttgagctgccttcacgttctctacgcggcctccccatgtcttcaatgcggtattttggagagctcttgcgtatgagaacgacacgtg |
394 |
Q |
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|||| || |||||||| ||||||| |||||||||| ||||||||||||||||||||||||||| || |||||||||||||| |||||||| |||||||| |
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| T |
27268621 |
aaaggagtgcttcttgtgctgcctgaacgttctctatgcggcctccccatgtcttcaatgcggtgttctggagagctcttgcatatgagaatgacacgtg |
27268522 |
T |
|
| Q |
395 |
ccatgggtttggagattggttcatggcattcaagttgag |
433 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
27268521 |
ccatgggtttggagattggttcatggcattcaagttgag |
27268483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 89
Target Start/End: Complemental strand, 27268834 - 27268795
Alignment:
| Q |
50 |
tagtctccaagactataaaatattacacatttttgacaaa |
89 |
Q |
| |
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|||||||||||||||||||| |||||||| |||||||||| |
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| T |
27268834 |
tagtctccaagactataaaacattacacaattttgacaaa |
27268795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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