View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11819_low_16 (Length: 400)

Name: NF11819_low_16
Description: NF11819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11819_low_16
NF11819_low_16
[»] chr8 (4 HSPs)
chr8 (122-400)||(7594953-7595226)
chr8 (1-130)||(7595513-7595639)
chr8 (243-273)||(27989094-27989124)
chr8 (243-273)||(28046396-28046426)
[»] scaffold0687 (1 HSPs)
scaffold0687 (122-400)||(4301-4571)
[»] chr6 (2 HSPs)
chr6 (223-274)||(679352-679403)
chr6 (235-269)||(17346334-17346368)
[»] chr4 (3 HSPs)
chr4 (229-264)||(22038614-22038649)
chr4 (223-273)||(36161974-36162024)
chr4 (223-273)||(37465736-37465786)
[»] scaffold0603 (1 HSPs)
scaffold0603 (231-273)||(7967-8009)
[»] chr7 (3 HSPs)
chr7 (223-273)||(11654045-11654095)
chr7 (235-273)||(34899414-34899452)
chr7 (223-260)||(3876061-3876098)
[»] chr5 (1 HSPs)
chr5 (235-273)||(8514450-8514488)
[»] chr2 (2 HSPs)
chr2 (229-273)||(14416414-14416458)
chr2 (233-273)||(27865172-27865212)


Alignment Details
Target: chr8 (Bit Score: 139; Significance: 1e-72; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 122 - 400
Target Start/End: Complemental strand, 7595226 - 7594953
Alignment:
Q  122 taaattatacatgcaacttttaaaaatataagaaatcttttgaatgctatta-cttggatgttgcaagtttattcgcaaatttacactttatatagcgat 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||| ||||| ||||||||||||||| ||||  |||||||    
T  7595226 taaattatacatgcaacttttaaaaatataagaaatcttttgaatgttattaacttgaatgttgtaagttcattcgcaaatttacattttacgtagcgat 7595127  T
Q  221 gtttgattatgttattgtatttgatgtactctatcaatttaaataaataaataaatattgatttcctttatnnnnnnnncaagaataaatcttttgaatg 320  Q
     |||||| |||| |||||||||||||||| |||||||||||||||||||    ||||||| |||||||||         |||||| ||||||||||||||    
T  7595126 atttgatcatgtcattgtatttgatgtacactatcaatttaaataaata----aatattgttttccttta--aaaaaaacaagaagaaatcttttgaatg 7595033  T
Q  321 gaagtaatagtattgattcatgaatggaagtatggttgctcattttctaacaaggtatcaacatatacacctcgacctta 400  Q
    ||||| ||| |||||||||||||||| |||| |||||||||||||||||||| || | | ||||||||||||||||||||    
T  7595032 gaagtcataatattgattcatgaatgaaagtgtggttgctcattttctaacacggaagccacatatacacctcgacctta 7594953  T

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Target: chr8; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 7595639 - 7595513
Alignment:
Q  1 ttaactgaaaacaatttatgaatatgtcagaagttattttacaagttctcttaaatagcctcaaagtgcttatatcaatatataataaatactcaagaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||   ||||| |||||| |||    
T  7595639 ttaactgaaaacaatttatgaatatgtcagaagttattttacaagttctcttaaatagcctcaaagagcttatatcaatat---ataaacactcaataaa 7595543  T
Q  101 ccaattcaaataggccgttaataaattata 130  Q
    ||||||||||||||||||||||||||||||    
T  7595542 ccaattcaaataggccgttaataaattata 7595513  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 273
Target Start/End: Original strand, 27989094 - 27989124
Alignment:
Q  243 gatgtactctatcaatttaaataaataaata 273  Q
    |||||||||||||||||||||||||||||||    
T  27989094 gatgtactctatcaatttaaataaataaata 27989124  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 273
Target Start/End: Original strand, 28046396 - 28046426
Alignment:
Q  243 gatgtactctatcaatttaaataaataaata 273  Q
    |||||||||||||||||||||||||||||||    
T  28046396 gatgtactctatcaatttaaataaataaata 28046426  T

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Target: scaffold0687 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: scaffold0687
Description:

Target: scaffold0687; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 122 - 400
Target Start/End: Complemental strand, 4571 - 4301
Alignment:
Q  122 taaattatacatgcaacttttaaaaatataagaaatcttttgaatgctatta-cttggatgttgcaagtttattcgcaaatttacactttatatagcgat 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||| ||||| ||||||||||||||| ||||  |||||||    
T  4571 taaattatacatgcaacttttaaaaatataagaaatcttttgaatgttattaacttgaatgttgtaagttcattcgcaaatttacattttacgtagcgat 4472  T
Q  221 gtttgattatgttattgtatttgatgtactctatcaatttaaataaataaataaatattgatttcctttatnnnnnnnncaagaataaatcttttgaatg 320  Q
     |||||| |||| |||||||||||||||| |||||||||||||||||||    ||||||| |||||||||           ||||  |||||||||||||    
T  4471 atttgatcatgtcattgtatttgatgtacactatcaatttaaataaata----aatattgttttcctttaaaaaaac----agaa-gaatcttttgaatg 4381  T
Q  321 gaagtaatagtattgattcatgaatggaagtatggttgctcattttctaacaaggtatcaacatatacacctcgacctta 400  Q
    ||||| ||| |||||||||||||||| |||| |||||||||||||||||||| || | | ||||||||||||||||||||    
T  4380 gaagtcataatattgattcatgaatgaaagtgtggttgctcattttctaacacggaagccacatatacacctcgacctta 4301  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 223 - 274
Target Start/End: Original strand, 679352 - 679403
Alignment:
Q  223 ttgattatgttattgtatttgatgtactctatcaatttaaataaataaataa 274  Q
    |||||||||||||||||| ||||||| ||||||||||| ||| |||||||||    
T  679352 ttgattatgttattgtatctgatgtattctatcaatttgaatgaataaataa 679403  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 269
Target Start/End: Complemental strand, 17346368 - 17346334
Alignment:
Q  235 ttgtatttgatgtactctatcaatttaaataaata 269  Q
    |||||||||||||||||||||||||||||| ||||    
T  17346368 ttgtatttgatgtactctatcaatttaaatgaata 17346334  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 229 - 264
Target Start/End: Complemental strand, 22038649 - 22038614
Alignment:
Q  229 atgttattgtatttgatgtactctatcaatttaaat 264  Q
    |||||||||||||||||||| |||||||||||||||    
T  22038649 atgttattgtatttgatgtattctatcaatttaaat 22038614  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 273
Target Start/End: Original strand, 36161974 - 36162024
Alignment:
Q  223 ttgattatgttattgtatttgatgtactctatcaatttaaataaataaata 273  Q
    ||||| |||||||||||||||||||| ||||||||||| ||| ||| ||||    
T  36161974 ttgatcatgttattgtatttgatgtattctatcaatttgaatgaatgaata 36162024  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 273
Target Start/End: Original strand, 37465736 - 37465786
Alignment:
Q  223 ttgattatgttattgtatttgatgtactctatcaatttaaataaataaata 273  Q
    ||||| |||||||||||| ||||||| ||||||||||||||| ||| ||||    
T  37465736 ttgatcatgttattgtatctgatgtattctatcaatttaaatgaatgaata 37465786  T

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Target: scaffold0603 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 273
Target Start/End: Original strand, 7967 - 8009
Alignment:
Q  231 gttattgtatttgatgtactctatcaatttaaataaataaata 273  Q
    |||||||||||||||||||||||||||||| ||| ||| ||||    
T  7967 gttattgtatttgatgtactctatcaatttgaatgaatgaata 8009  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 273
Target Start/End: Original strand, 11654045 - 11654095
Alignment:
Q  223 ttgattatgttattgtatttgatgtactctatcaatttaaataaataaata 273  Q
    ||||| |||||||||||||||||||| ||||||||||| ||| ||| ||||    
T  11654045 ttgatgatgttattgtatttgatgtattctatcaatttgaatgaatgaata 11654095  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 273
Target Start/End: Complemental strand, 34899452 - 34899414
Alignment:
Q  235 ttgtatttgatgtactctatcaatttaaataaataaata 273  Q
    |||||||||||||||||||||||||| ||| ||||||||    
T  34899452 ttgtatttgatgtactctatcaatttgaatgaataaata 34899414  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 260
Target Start/End: Complemental strand, 3876098 - 3876061
Alignment:
Q  223 ttgattatgttattgtatttgatgtactctatcaattt 260  Q
    ||||| |||||||||||||||||||| |||||||||||    
T  3876098 ttgatcatgttattgtatttgatgtattctatcaattt 3876061  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 273
Target Start/End: Complemental strand, 8514488 - 8514450
Alignment:
Q  235 ttgtatttgatgtactctatcaatttaaataaataaata 273  Q
    ||||||||||| ||||||||| |||||||||||||||||    
T  8514488 ttgtatttgatatactctatcgatttaaataaataaata 8514450  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 273
Target Start/End: Original strand, 14416414 - 14416458
Alignment:
Q  229 atgttattgtatttgatgtactctatcaatttaaataaataaata 273  Q
    |||||||||||| ||||||| ||||||||||| ||| ||||||||    
T  14416414 atgttattgtatctgatgtattctatcaatttgaatgaataaata 14416458  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 273
Target Start/End: Original strand, 27865172 - 27865212
Alignment:
Q  233 tattgtatttgatgtactctatcaatttaaataaataaata 273  Q
    |||||||| | ||||||||| ||||||||||||||||||||    
T  27865172 tattgtatctaatgtactctttcaatttaaataaataaata 27865212  T

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