View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11819_low_17 (Length: 393)
Name: NF11819_low_17
Description: NF11819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11819_low_17 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 26767983 - 26767602
Alignment:
| Q |
1 |
aaaagaaattaagcagacttatgagttctgaagactgaaacacacaaatttcattccttctaacaacctttaaatacaagaaattcataatcagaaataa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26767983 |
aaaagaaattaagcagacttatgagttctgaagactgaaacacacaaatttcattccttctaacaacctttaaatacaagaaattcataatcagaaataa |
26767884 |
T |
|
| Q |
101 |
acaaaagaaaaactgcctataaatttgtaacagacaacataaatctgtaacctcccataattcctataattaaaatcataacaatcataaccataaatac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26767883 |
acaaaagaaaaactgcctataaatttgtaacagacaacataaatctgtaacctcccataattcctataattaaaatcataacaatcataaccataaatac |
26767784 |
T |
|
| Q |
201 |
tacaataaactctaataataggttctgatccatattctcaacactcctccttggatcagaagctattgacaccaagcttctctctcaagttctcaaatct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26767783 |
tacaataaactctaataataggttctgatccatattctcaacactcctccttggatcagaagctattgacaccaagcttctctctcaagttctcaaatct |
26767684 |
T |
|
| Q |
301 |
tccttttgaaagagtctttgtaaagatgtctgccaattggtcttctgtcttgcaatattgtaacaagacttctccttccttt |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26767683 |
tccttttgaaagagtctttgtaaagatgtctgccaattggtcttctgtcttgcaatattgtaacaagacttctccttccttt |
26767602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 26763731 - 26763489
Alignment:
| Q |
1 |
aaaagaaattaagcagacttatgagttctgaagactgaaacacacaaatttcattccttctaacaacctttaaatacaagaaattcataatcagaaataa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26763731 |
aaaagaaattaagcagacttatgagttctgaagactgaaacacacaaatttcattccttctaacaacctttaaatacaagaaattcataatcagaaataa |
26763632 |
T |
|
| Q |
101 |
acaaaagaaaaactgcctataaatttgtaacagacaacataaatctgtaacctcccataattcctataattaaaatcataacaatcataaccataaatac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26763631 |
acaaaagaaaaactgcctataaatttgtaacagacaacataaatctgtaacctcccataattcctataattaaaatcataacaatcataaccataaatac |
26763532 |
T |
|
| Q |
201 |
tacaataaactctaataataggttctgatccatattctcaaca |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26763531 |
tacaataaactctaataataggttctgatccatattctcaaca |
26763489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 35926471 - 35926852
Alignment:
| Q |
1 |
aaaagaaattaagcagacttatgagttctgaagactgaaacacacaaatttcattccttctaacaacctttaaatacaagaaattcataatcagaaataa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35926471 |
aaaagaaattaagcagacttatgagttctgaagactgaaacacacaaatttcattccttctaacaacctttaaatacaagaaattcataatcagaaataa |
35926570 |
T |
|
| Q |
101 |
acaaaagaaaaactgcctataaatttgtaacagacaacataaatctgtaacctcccataattcctataattaaaatcataacaatcataaccataaatac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35926571 |
acaaaagaaaaactgcctataaatttgtaacagacaacataaatctgtaacctcccataattcctataattaaaatcataacaatcataaccataaatac |
35926670 |
T |
|
| Q |
201 |
tacaataaactctaataataggttctgatccatattctcaacactcctccttggatcagaagctattgacaccaagcttctctctcaagttctcaaatct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35926671 |
tacaataaactctaataataggttctgatccatattctcaacactcctccttggatcagaagctattgacaccaagcttctctctcaagttctcaaatct |
35926770 |
T |
|
| Q |
301 |
tccttttgaaagagtctttgtaaagatgtctgccaattggtcttctgtcttgcaatattgtaacaagacttctccttccttt |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35926771 |
tccttttgaaagagtctttgtaaagatgtctgccaattggtcttctgtcttgcaatattgtaacaagacttctccttccttt |
35926852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 35930723 - 35930962
Alignment:
| Q |
1 |
aaaagaaattaagcagacttatgagttctgaagactgaaacacacaaatttcattccttctaacaacctttaaatacaagaaattcataatcagaaataa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35930723 |
aaaagaaattaagcagacttatgagttctgaagactgaaacacacaaatttcattccttctaacaacctttaaatacaagaaattcataatcagaaataa |
35930822 |
T |
|
| Q |
101 |
acaaaagaaaaactgcctataaatttgtaacagacaacataaatctgtaacctcccataattcctataattaaaatcataacaatcataaccataaatac |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35930823 |
acaaaagaaaatctgcctataaatttgtaacagacaacataaatctgtaa---cccataattcctataattaaaatcataacaatcataaccataaatac |
35930919 |
T |
|
| Q |
201 |
tacaataaactctaataataggttctgatccatattctcaaca |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35930920 |
tacaataaactctaataataggttctgatccatattctcaaca |
35930962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 9791223 - 9791603
Alignment:
| Q |
1 |
aaaagaaattaagcagacttatgagttctgaagactgaaacacacaaatttcattccttctaacaacctttaaatacaagaaattcataatcagaaataa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
9791223 |
aaaagaaattaagcagacttatgagttctgaaaactgaaacacacacatttcattccttctaacaac-tttaaatacaagaaattcataatcagaaataa |
9791321 |
T |
|
| Q |
101 |
acaaaagaaaaactgcctataaatttgtaacagacaa-cataaatctgtaacctcccataattcctataattaaaatcataacaatcataaccata--aa |
197 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||| || |
|
|
| T |
9791322 |
acaaaa---aaactgcctataaatttgtaacagacaaacataaatttgtaacctcccataattcctatagttaaaatcataacagtcataaccataggaa |
9791418 |
T |
|
| Q |
198 |
tactacaataaactctaataataggttctgatccatattctcaacactcctccttggatcagaagctattgacaccaagcttctctctcaagttctcaaa |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9791419 |
tactacaataaactctaataataggttctgatccatattctcaacactcctccttggatcagaagctattgacaccaagcttctctctcaagttctcaaa |
9791518 |
T |
|
| Q |
298 |
tcttccttttgaaagagtctttgtaaagatgtctgccaattggtcttctgtcttgcaatattgtaacaagacttctccttccttt |
382 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9791519 |
tcttccttttgaaagagtctttgtaaagatgtctgccaattggtcttctgtcttgcaatattgtaacaagacttctccttccttt |
9791603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 45994681 - 45995064
Alignment:
| Q |
1 |
aaaagaaattaagcagacttatgagttctgaagactgaaacacacaaatttcattccttctaacaacctttaaatacaagaaattcataatcagaaataa |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45994681 |
aaaagaaattatgcagacttatgagttctgaaaactgaaacacacacatttcattccttctaacaacctttaaatacaagaaattcataatcagaaataa |
45994780 |
T |
|
| Q |
101 |
acaaaagaaaaactgcctataaatttgtaacagacaa-cataaatctgtaacctcccataattcctataattaaaatcataacaatcataaccata--aa |
197 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||| || |
|
|
| T |
45994781 |
acaaaa-aaaaactgcctataaatttgtaactgacaaacataaatttgtaacctcccataattcctatagttaaaatcataacagtcataaccataggaa |
45994879 |
T |
|
| Q |
198 |
tactacaataaactctaataataggttctgatccatattctcaacactcctccttggatcagaagctattgacaccaagcttctctctcaagttctcaaa |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
45994880 |
tactacaataaactctaataataggttctgatccatattctcaacactcctccttggatcagaagctattgacaccaagcttctgtctcaagttctcaaa |
45994979 |
T |
|
| Q |
298 |
tcttccttttgaaagagtctttgtaaagatgtctgccaattggtcttctgtcttgcaatattgtaacaagacttctccttccttt |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
45994980 |
tcttccttttgaaagagtctttgtaaagatgtctgccaattggtcttctgtcttgcgatattgtaacaagacttctccttccttt |
45995064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 45998934 - 45999178
Alignment:
| Q |
1 |
aaaagaaattaagcagacttatgagttctgaagactgaaacacacaaatttcattccttctaacaacctttaaatacaagaaattcataatcagaaataa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45998934 |
aaaagaaattaagcagacttatgagttctgaaaactgaaacacacacatttcattccttctaacaacctttaaatacaagaaattcataatcagaaataa |
45999033 |
T |
|
| Q |
101 |
acaaaagaaaaactgcctataaatttgtaacagac-aacataaatctgtaacctcccataattcctataattaaaatcataacaatcataaccata--aa |
197 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||| | ||||||||||| || |
|
|
| T |
45999034 |
acaaaa-aaaaactgcctataaagttgtaacagacaaacataaatttgtaacctcccataattcctatagttaaaatcataatagtcataaccataggaa |
45999132 |
T |
|
| Q |
198 |
tactacaataaactctaataataggttctgatccatattctcaaca |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45999133 |
tactacaataaactctaataataggttctgatccatattctcaaca |
45999178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 9795562 - 9795803
Alignment:
| Q |
1 |
aaaagaaattaagcagacttatgagttctgaagactgaaacacacaaatttcattccttctaacaacctttaaatacaagaaattcataatcagaaataa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
9795562 |
aaaagaaattaagcagacttatgagttctgaaaactgaaacacacacatttcattccttctaacaa-ctttaaatacaagaaattcataatcagaaataa |
9795660 |
T |
|
| Q |
101 |
acaaaagaaaaactgcctataaatttgtaacagac-aacataaatctgtaacctcccataattcctataattaaaatcataacaatcataaccata--aa |
197 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||| || |
|
|
| T |
9795661 |
acaa---aaaaactgcctataaatttgtaacagacaaacataaatttgtaacctcccataattcctatagttaaaatcataacagtcataaccataggaa |
9795757 |
T |
|
| Q |
198 |
tactacaataaactctaataataggttctgatccatattctcaaca |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9795758 |
tactacaataaactctaataataggttctgatccatattctcaaca |
9795803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 26708550 - 26708930
Alignment:
| Q |
1 |
aaaagaaattaagcagacttatgagttctgaagactgaaacacacaaatttcattccttctaacaacctttaaatacaagaaattcataatcagaaataa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26708550 |
aaaagaaattaagcagacttatgagttctgaaaactgaaacacacacatttcattccttctaacaac-tttaaatacaagaaattcataatcagaaataa |
26708648 |
T |
|
| Q |
101 |
acaaaagaaaaactgcctataaatttgtaacagacaa-cataaatctgtaacctcccataattcctataattaaaatcataacaatcataaccata--aa |
197 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||| || |
|
|
| T |
26708649 |
acaaaa---aaactgcctataaatttgtaacagacaaacataaatttgtaacctcccataattcctatagttaaaatcataacagtcataaccataggaa |
26708745 |
T |
|
| Q |
198 |
tactacaataaactctaataataggttctgatccatattctcaacactcctccttggatcagaagctattgacaccaagcttctctctcaagttctcaaa |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
26708746 |
tactacaataaactctaataataggttctgatccatattctcaacactcctccttggatcagaagctattgacaccaagcttctgtctcaagttctcaaa |
26708845 |
T |
|
| Q |
298 |
tcttccttttgaaagagtctttgtaaagatgtctgccaattggtcttctgtcttgcaatattgtaacaagacttctccttccttt |
382 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26708846 |
tcttccttttgaaagagtctttgtaaagatgtctgccaattggtcttctgtcttgcaatattgtaacaagacttctccttccttt |
26708930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 6 - 243
Target Start/End: Original strand, 23434913 - 23435154
Alignment:
| Q |
6 |
aaattaagcagacttatgagttctgaagactgaaacacacaaatttcattccttctaacaacctttaaatacaagaaattcataatcagaaataaac-aa |
104 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
23434913 |
aaattaagcagacttatgagttctgaaaactgaaacacacacatttcattccttctaacaacctttaaatacaagaaactcataatcagaaataaacaaa |
23435012 |
T |
|
| Q |
105 |
aagaaaaactgcctataaatttgtaacag-acaacataaatctgtaacctcccataattcctataattaaaatcataacaatcataaccata--aatact |
201 |
Q |
| |
|
|| |||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
23435013 |
aacaaaaactgcctataaatttgtaccagaacaacataaatttgtaacctcccataattcctataattaaaatcataacagtcataaccataggaatact |
23435112 |
T |
|
| Q |
202 |
acaataaactctaataataggttctgatccatattctcaaca |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23435113 |
gcaataaactctaataataggttctgatccatattctcaaca |
23435154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 26712801 - 26713042
Alignment:
| Q |
1 |
aaaagaaattaagcagacttatgagttctgaagactgaaacacacaaatttcattccttctaacaacctttaaatacaagaaattcataatcagaaataa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
26712801 |
aaaagaaattaagcagacttatgagttctgaaaactgaaacacacacatttcattccttctaacaa-ctttaaatacaagaaattcataatcagaaataa |
26712899 |
T |
|
| Q |
101 |
acaaaagaaaaactgcctataaatttgtaacagac-aacataaatctgtaacctcccataattcctataattaaaatcataacaatcataaccata--aa |
197 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||| |||||||||||||| ||||||||||| || |
|
|
| T |
26712900 |
acaa---aaaaactgcctataaatttgtaacagacaaacataaatttgtaacctcctataattcctatagttaaaatcataacagtcataaccataggaa |
26712996 |
T |
|
| Q |
198 |
tactacaataaactctaataataggttctgatccatattctcaaca |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26712997 |
tactacaataaactctaataataggttctgatccatattctcaaca |
26713042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 27695021 - 27695263
Alignment:
| Q |
1 |
aaaagaaattaagcagacttatgagttctgaagactgaaacacacaaatttcattccttctaacaacctttaaatacaagaaattcataatcagaaataa |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27695021 |
aaaagaaattaagcagatttatgagttctgaaaactgaaacacacaaatttcattccttctaacaacctttaaatacaagaaattcataatcagaaataa |
27695120 |
T |
|
| Q |
101 |
acaaaagaaaaactgcctataaatttgtaacagacaacataaatctgtaacctcccataattcctataattaaaatcataacaatcataaccataaatac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
27695121 |
acaaaagaaaaactgcctataaatttgtaacagacaacataaatctataacctcccataattcctataattaaaatcataacagtcataaccataaatac |
27695220 |
T |
|
| Q |
201 |
tacaataaactctaataataggttctgatccatattctcaaca |
243 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27695221 |
tacaacaaactctaataataggttctgatccatattctcaaca |
27695263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 179; Significance: 2e-96; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 34632105 - 34632349
Alignment:
| Q |
1 |
aaaagaaattaagcaga--cttatgagttctgaagactgaaacacacaaatttcattccttctaacaacctttaaatacaagaaattcataatcagaaat |
98 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
34632105 |
aaaagaaattaagcagagacttatgagttctgaaaactgaaacacacacatttcattccttctaataacctttaaatacaagaaattcataatcagaaat |
34632204 |
T |
|
| Q |
99 |
aaacaaaagaaaaactgcctataaatttgtaacagac-aacataaatctgtaacctcccataattcctataattaaaatcataacaatcataaccata-- |
195 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
34632205 |
aaacaaaagaaaaaatgcctataaatttgtaacggacaaacataaatctataacctcccataattcctatagttaaaatcataacagtcataaccatagg |
34632304 |
T |
|
| Q |
196 |
aatactacaataaactctaataataggttctgatccatattctca |
240 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
34632305 |
aatactacaataaactccaataataggttctgatccatattctca |
34632349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 14715336 - 14715143
Alignment:
| Q |
17 |
acttatgagttctgaagactgaaacacacaaatttcattccttctaacaacctttaaatacaagaaattcataatcagaaataaacaaaagaaaaactgc |
116 |
Q |
| |
|
|||||||| |||| || ||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||| |||||||| |
|
|
| T |
14715336 |
acttatgatttctaaaaactgaaaaacattaatttcattccttctaacaacctttaaatacaggaaattcataatcagaaatcaatcaaa-taaaactgc |
14715238 |
T |
|
| Q |
117 |
ctataaatttgtaacag-acaacataaatctgtaacctcccataattcctataattaaaatcat-aacaatcataaccata--aatactacaataa |
208 |
Q |
| |
|
|||||||||| |||||| ||| |||||| ||||| |||||||||||||||||||| ||||||| |||| ||||||| ||| ||||||||||||| |
|
|
| T |
14715237 |
ctataaatttctaacagcccaatataaatttgtaatctcccataattcctataatt-aaatcatcaacagtcataactataggaatactacaataa |
14715143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 196 - 267
Target Start/End: Original strand, 34607210 - 34607281
Alignment:
| Q |
196 |
aatactacaataaactctaataataggttctgatccatattctcaacactcctccttggatcagaagctatt |
267 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
34607210 |
aatactgcaataaactctaataataggttctgatccatattctcaacactcctccttggatcagaacctatt |
34607281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 34607325 - 34607266
Alignment:
| Q |
175 |
atcataacaatcataaccata--aatactacaataaactctaataataggttctgatcca |
232 |
Q |
| |
|
||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
34607325 |
atcataacagtcataaccataggaatacagcaataaactctaataataggttctgatcca |
34607266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University