View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11819_low_19 (Length: 373)
Name: NF11819_low_19
Description: NF11819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11819_low_19 |
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| [»] scaffold0432 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-168; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 16 - 363
Target Start/End: Complemental strand, 9805341 - 9804994
Alignment:
| Q |
16 |
gacatcattgaacaggataagatggaaggtatttcatgtactcgcgaaaagggagaatcaaggtatattgtgatttttgttttattcggttattaaaata |
115 |
Q |
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| T |
9805341 |
gacatcattgaacaggacaagatggaaggtatttcatgtactcgcgaaaagggagaatcaaggtatattgtgattttttttttattcggttattaaaata |
9805242 |
T |
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| Q |
116 |
tgtacttgtatttgttatttgctatttacttctagtacacattttatcttaaatttttgtacacataaatgcatcaaagggaaaaggaattcttgttgaa |
215 |
Q |
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| T |
9805241 |
tgtacttgtatttgttattttctatttacttctagtacacattttatattaaatttttgtacataggaatgcatcaaagggaaaaggaattcttgttgaa |
9805142 |
T |
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| Q |
216 |
caaaatgaaaagcaccagtgatgagcaggaagactcttccccaaaagtaagatggggaatttgaagagtataagaaatccatctgtggataataaattaa |
315 |
Q |
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| T |
9805141 |
caaaatgaaaagcactggtgatgaggaggaagactcttccccaaaggtaagatggggaatttgaagagtataagaaatccatgtgtggataataaattaa |
9805042 |
T |
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| Q |
316 |
aataaaatccatgtatttattacatagtatgatgtttgaaaccactca |
363 |
Q |
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| T |
9805041 |
aataaaatccatgtatttattacatagtatgatgtttgaaaccactca |
9804994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 75 - 363
Target Start/End: Complemental strand, 9818211 - 9817919
Alignment:
| Q |
75 |
aaggtatattgtgattt--ttgttttattcggttattaaaatatgtacttgtatttgttatttgctatttacttctagtacacattttatcttaaatttt |
172 |
Q |
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| T |
9818211 |
aaggtatattgtgatttattttttttatacggttattaaattatgtacttgtatttgttattttctatttacttctagtacacaatttatattaaatttt |
9818112 |
T |
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| Q |
173 |
tgtacacataaatgcatcaaagggaaaaggaattcttgttgaacaaaatgaaaagcaccagtgatgagcaggaagactcttccccaaaagtaagatgggg |
272 |
Q |
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| T |
9818111 |
tgtacacaagaatgcatcaaagggaaaaggaattcttgttgaacaaaatgaaaagcactagtgatgaggaggaagactcttccccaaaggtaagatgggg |
9818012 |
T |
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| Q |
273 |
aatttgaagagt--ataagaaatccatctgtggataataaattaaaataaaatccatgtatttattacatagtatgatgtttgaaaccactca |
363 |
Q |
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| T |
9818011 |
aatttgaagagtagaaaagaaatccatgtgtagataataaattaaaataaaatccatgtatttatcacatagtatgatgtttgaaatcactca |
9817919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 16 - 356
Target Start/End: Original strand, 9806455 - 9806792
Alignment:
| Q |
16 |
gacatcattgaacaggataagatggaaggtatttcatgtactcgcgaaaagggagaatcaaggtatattgtgatt--tttgttttattcggttattaaaa |
113 |
Q |
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| T |
9806455 |
gacatcattgaacaagacaagatggaaggtatttcacgtgctcacgaaaagggagaatcaaggtatattgtgatttatttattttagttggttattcaaa |
9806554 |
T |
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| Q |
114 |
tatgtacttgtatttgttatttgctatttacttctagtacacattttatcttaaatttttgtacacataaatgcatcaaagggaaaaggaattcttgttg |
213 |
Q |
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| T |
9806555 |
tatgtacttgtgtttgttattttctatttgtttctaatacacattttatatttaatttttgtacac------------aagggaaaaggaattattgttg |
9806642 |
T |
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| Q |
214 |
aacaaaatgaaaag-----caccagtgatgagcaggaagactcttccccaaaagtaagatggggaatttgaagagt---ataagaaatccatctgtggat |
305 |
Q |
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| T |
9806643 |
aacaaaatgaagaggaggccactatagaagaggaggaagactatt-cccgaaagtaaggtggggaatttgaagagtagaataagaagttcatgtctaccc |
9806741 |
T |
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| Q |
306 |
aataaattaaaataaaatccatgtatttattacatagtatgatgtttgaaa |
356 |
Q |
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| T |
9806742 |
aataaaataaaataaaatccatgtatttattacatagtatgatgtttgaaa |
9806792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: scaffold0432
Description:
Target: scaffold0432; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 13 - 363
Target Start/End: Complemental strand, 12285 - 11928
Alignment:
| Q |
13 |
atggacatcattgaacaggataagatggaaggtatttcatgtactcgcgaaaagggagaatcaaggtatattgtgattt-ttgttttattcggttattaa |
111 |
Q |
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|||||||||||||| || || ||||||||||||||| ||||||||| |||||||| ||||||| |||| ||||||||| || ||||| | ||||||| | |
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| T |
12285 |
atggacatcattgatcatgacaagatggaaggtattccatgtactcatgaaaagggggaatcaacgtattttgtgatttatttttttagttggttattca |
12186 |
T |
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| Q |
112 |
aatatgtacttgtatttgttatttgctatttacttctagtacacattttatcttaaatttttgtacacataaatgcatcaaagggaaaaggaattcttgt |
211 |
Q |
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| T |
12185 |
attatgtacttatgtttgttattttatatttacttctagtac-cattttatattaaattttggtacacgataatgcagcgaagggagaaggaattcttgt |
12087 |
T |
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| Q |
212 |
tgaacaaaatgaaaag-----caccagtgatgagcaggaagactcttccccaaaagtaagatggggaatttgaagagt---ataagaaatccatctgtgg |
303 |
Q |
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| T |
12086 |
tgaacaaaatgaaaaggatgccactagtgataacgaggaagactctt-ccctaaagtaagatggggaatttgaagagtagaataagaaatctatgtgtac |
11988 |
T |
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| Q |
304 |
ataataaattaaaataaaatccatgtatttattacatagtatgatgtttgaaaccactca |
363 |
Q |
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|||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
11987 |
ataataaaataaaataaaattcatgtatttattacatagtatgatgtttgaaatcactca |
11928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 41 - 132
Target Start/End: Complemental strand, 2371144 - 2371052
Alignment:
| Q |
41 |
aaggtatttcatgtactcgcgaaaagggagaatcaaggtatattgtgattt-ttgttttattcggttattaaaatatgtacttgtatttgtta |
132 |
Q |
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|||||||| |||||||||| ||||| ||||||||||||||||||||||||| || ||||| ||| ||||| |||||| ||||| | ||||||| |
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| T |
2371144 |
aaggtattccatgtactcgtgaaaaaggagaatcaaggtatattgtgatttatttttttagtcgattattcaaatatatacttatgtttgtta |
2371052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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