View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11819_low_2 (Length: 743)
Name: NF11819_low_2
Description: NF11819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11819_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 596; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 82 - 721
Target Start/End: Complemental strand, 40797544 - 40796906
Alignment:
| Q |
82 |
agaaataatagcgacaggaatgccaaggcagacaaacttaagatttcaacacacgctgtgcaaccaagtccatcatcctgttagcccttatattgaacaa |
181 |
Q |
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| T |
40797544 |
agaaataatagtgacaggaatgccaagccagacaaacttaagatttcaacacacgctgtgcaaccaagtccatcatcctgttagccctgatattgaacaa |
40797445 |
T |
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| Q |
182 |
ttaactcaaatgtagaattcatggatacatcaaactgtgtagcatgtgctatgctggcgatgttatttaacgtaccacattactaccctcatttattctt |
281 |
Q |
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| T |
40797444 |
tgaactcaaatgtagaattcatggatacatcaaactgtgtagcatgtgctatgctggcgatgttatttaacgtaccacgttactaccctcatttattctt |
40797345 |
T |
|
| Q |
282 |
aaaatctactctctaaatccttcaagatcactgcataagttgataaatgttttgttaaccacaaacttggaggttaaacatctcaatgaacttcaaaatt |
381 |
Q |
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| T |
40797344 |
aaaatctactctctaaatccttcaagatcactgcataagttgataaatgttttgtcaaccacaaacttggaggttaaacatc-caatgaacttcaaaatt |
40797246 |
T |
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| Q |
382 |
aaaaacaaatttcatgtaaactttcaaacgccaaagtatcgagtaaagaacatggtattggtattggaaacaatgagcagaattttaatagtcctaaagt |
481 |
Q |
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| T |
40797245 |
aaaaacaaatttcatgtaaactttcaaacgccaaagtatcgagtaaagaacatggtattggtattggaaacaatgagcagaattttaatagtcctaaagt |
40797146 |
T |
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| Q |
482 |
aaattttcactagtcttcactcatcagtgcgcatatccaaattgaatgaattgtatgaaacagaaacaaaggcccttgtgcttctaatgacaattaaaaa |
581 |
Q |
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| T |
40797145 |
aaattttcactagtcttcactcatcagtgcgcatatccaaattgaatgaattgtatgaaacagaaacaaaggcccttgtgcttctaatgacaattaaaaa |
40797046 |
T |
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| Q |
582 |
catatctatgcgccaaggtttacaaccctctttgaatatcacattgtccactctatggtttagacttagagtgaatcaacaatagcccaattcttattca |
681 |
Q |
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| T |
40797045 |
catatctatgcggcaaggtatacaaccctctttgaatatcacattgtccactctatggtttagacttagagtgaatcaacaatagcccaattcttattca |
40796946 |
T |
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| Q |
682 |
acacagtacaaagtaaaactacagtggtttaatcttcaat |
721 |
Q |
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| T |
40796945 |
acacagtacaaagtaaaaccacagtggtttaatcttcaat |
40796906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 40797688 - 40797598
Alignment:
| Q |
18 |
acatcaaccaaagatatgaaacaggtcccagtcaacagctcaaacgacaatggaatgaaatataagaaataatagcgacaggaatgccaag |
108 |
Q |
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| T |
40797688 |
acatcaaccaaagttatgaaacaggtcccagtcaactgctcaaacgacaatggaatgaaatataagaaataatagcgacaggaatgccaag |
40797598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 505 - 592
Target Start/End: Original strand, 8621058 - 8621144
Alignment:
| Q |
505 |
tcagtgcgcatatccaaattgaatgaattgtatgaaacagaaacaaaggcccttgtgcttctaatgacaattaaaaacatatctatgc |
592 |
Q |
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| T |
8621058 |
tcagtgcacacatccaagttgaatgaattgtatgaaacag-aaccgagccccttctgattcgaataacaattaaaaacatatctatgc |
8621144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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