View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11819_low_21 (Length: 343)

Name: NF11819_low_21
Description: NF11819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11819_low_21
NF11819_low_21
[»] chr4 (17 HSPs)
chr4 (19-333)||(5551831-5552145)
chr4 (19-314)||(5854265-5854563)
chr4 (26-324)||(5849282-5849583)
chr4 (26-316)||(5887507-5887797)
chr4 (53-326)||(5896382-5896658)
chr4 (32-317)||(3747594-3747879)
chr4 (28-324)||(5557605-5557901)
chr4 (204-317)||(5563397-5563510)
chr4 (205-314)||(5856751-5856860)
chr4 (230-324)||(5612206-5612300)
chr4 (237-324)||(5604088-5604175)
chr4 (26-163)||(5612364-5612501)
chr4 (29-107)||(5856955-5857033)
chr4 (275-329)||(5890816-5890870)
chr4 (238-324)||(5572654-5572740)
chr4 (238-324)||(5584861-5584947)
chr4 (59-107)||(5604302-5604350)
[»] chr8 (1 HSPs)
chr8 (277-324)||(1481830-1481877)


Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 19 - 333
Target Start/End: Complemental strand, 5552145 - 5551831
Alignment:
Q  19 catggaaccatagaatgttcacattcacaatcagataagcattggaaaatgattcagattgtggacatttctttcagcaatttcaatggtaagttacaag 118  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  5552145 catggaaccatagaatgttcacattcacaagcagataagcattggaaaatgattcagattgtggacatttcttgcaacaatttcaatggtaagttacaag 5552046  T
Q  119 aaaaatacttcgcaacatgggatagaatgatgcaagatgaagttgatgttataccagacttcatccacacacgaaacaaagattgctcatactattagga 218  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||    
T  5552045 aaaaatacttcgcaacttgggatagaatgatgcaagatgaagttgatgttataccagacttcatccacacgcgaaacaaagactgctcatactatcagga 5551946  T
Q  219 tagtgtgacggtttctattaaaggtcagcaaatgaagttggttaaaattctagcaatcttcacagccattgatttctcatccaatcattttgaaggaccg 318  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  5551945 tagtgtgacagtttctattaaaggtcagcaaatgaagtttgttaaaattctagcaatcttcacagccattgatttctcatccaatcattttgaaggacca 5551846  T
Q  319 ataccacaggttctg 333  Q
    |||||||||||||||    
T  5551845 ataccacaggttctg 5551831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 19 - 314
Target Start/End: Original strand, 5854265 - 5854563
Alignment:
Q  19 catggaaccatagaatgttcacattcacaatcagataagcattggaaaatgattcagattgtggacatttctttcagcaatttcaatggtaagttacaag 118  Q
    |||||| |||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||| ||  ||||||    
T  5854265 catggatccatggaatgttcacattcacaagcagataagcattagaaaatgattcagattgtggacattgctttcaacaatttcaatggaaaactacaag 5854364  T
Q  119 aaaaatacttcgcaacatgggatagaatgatgcaagatgaagttgatgttataccagacttcatccacacacgaaacaaagattgctcatactattagga 218  Q
    ||||||||||||||||||||||||||||  |||||||||||| |||||||||| |||||||||||||||| | ||| ||||| | | |||| ||| ||||    
T  5854365 aaaaatacttcgcaacatgggatagaat--tgcaagatgaagatgatgttatatcagacttcatccacacgctaaagaaagactacacatattatcagga 5854462  T
Q  219 tagtgtgacggtttctattaaaggtcagcaaatgaagttggttaaaattctagc-----aatcttcacagccattgatttctcatccaatcattttgaag 313  Q
    || |||||| ||||| | |||||||||| | ||||||||||||||||||||| |     |||||||||||| ||||||||||||||||||||||| ||||    
T  5854463 tactgtgacagtttccaataaaggtcaggagatgaagttggttaaaattctaacaatataatcttcacagcgattgatttctcatccaatcatttcgaag 5854562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 26 - 324
Target Start/End: Original strand, 5849282 - 5849583
Alignment:
Q  26 ccatagaatgttcacattcacaatcagataagcattggaaaatgattcagattgtggacatttctttcagcaatttcaatggtaagttacaagaaaaata 125  Q
    ||||||||||||||||||||| |  | |||||| ||||||||||||||| |||||||||||| |||| | |||||||||||| ||  ||| |||||||||    
T  5849282 ccatagaatgttcacattcactagaaaataagccttggaaaatgattcaaattgtggacattgctttgaacaatttcaatggaaaaataccagaaaaata 5849381  T
Q  126 cttcgcaacatgggatagaatgatgcaagatgaagttgatgttataccagacttcatccaca-ca--cgaaacaaagattgctcatactattaggatagt 222  Q
     |||   |||||||| ||||||||||| ||||||  ||||  |||| ||||||||||| ||| ||   |||| ||   || |||||| ||  | ||||||    
T  5849382 tttcatgacatgggaaagaatgatgcatgatgaaaatgattctatatcagacttcatctacagcatgggaaagaacttttactcatattaccaagatagt 5849481  T
Q  223 gtgacggtttctattaaaggtcagcaaatgaagttggttaaaattctagcaatcttcacagccattgatttctcatccaatcattttgaaggaccgatac 322  Q
    ||||| ||||| | |||||||||  |||| |||| ||  |||||||||  |||||| ||||||||||||||||||||||||||||| |||||||| ||||    
T  5849482 gtgaccgtttccaataaaggtcaaaaaattaagtaggaaaaaattctaaaaatctttacagccattgatttctcatccaatcatttcgaaggaccaatac 5849581  T
Q  323 ca 324  Q
    ||    
T  5849582 ca 5849583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 26 - 316
Target Start/End: Original strand, 5887507 - 5887797
Alignment:
Q  26 ccatagaatgttcacattcacaatcagataagcattggaaaatgattcagattgtggacatttctttcagcaatttcaatggtaagttacaagaaaaata 125  Q
    |||||||||||||| |||| | |  | |||||| ||||||||||||||| |||||||||||| |||||| |||||||||||| ||  ||| |||||||||    
T  5887507 ccatagaatgttcagattctctagaaaataagccttggaaaatgattcaaattgtggacattgctttcaacaatttcaatggaaaaataccagaaaaata 5887606  T
Q  126 cttcgcaacatgggatagaatgatgcaagatgaagttgatgttataccagacttcatccacacacgaaacaaagattgctcatactattaggatagtgtg 225  Q
     ||| |||||||||| ||||||||||||||||||   ||| | | | ||||||||||||| |   ||   ||    | |||||| ||  | |||||||||    
T  5887607 tttcacaacatgggaaagaatgatgcaagatgaaaacgatttgaaatcagacttcatccatatgagatttaacttcttctcatattaccaagatagtgtg 5887706  T
Q  226 acggtttctattaaaggtcagcaaatgaagttggttaaaattctagcaatcttcacagccattgatttctcatccaatcattttgaaggac 316  Q
    || ||||| | |||||||||  || | ||||  | |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  5887707 acagtttccaataaaggtcaagaacttaagtatgataaaattctaacaatctttacagccattgatttctcatccaatcattttgaaggac 5887797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 53 - 326
Target Start/End: Original strand, 5896382 - 5896658
Alignment:
Q  53 ataagcattggaaaatgattcagattgtggacatttctttcagcaatttcaatggtaagttacaagaaaaatacttcgcaacatgggatagaatgatgca 152  Q
    |||||| ||||||||||||||| |||||||||||| |||||| ||||||||| || ||  |||||||||||||||| ||||||||||| | ||||| | |    
T  5896382 ataagccttggaaaatgattcaaattgtggacattgctttcaacaatttcaacggaaaactacaagaaaaatactttgcaacatgggaaaaaatgaagaa 5896481  T
Q  153 agatgaagttgatgttataccagacttcatccacacacg---aaacaaagattgctcatactattaggatagtgtgacggtttctattaaaggtcagcaa 249  Q
     ||||||    ||||| || ||||||| ||||||||  |   ||  | ||| | | |||| ||| |||||||||||||  |||||| |||||||||        
T  5896482 tgatgaaaacaatgttctatcagactttatccacacgggggaaaggacagactacacatattatcaggatagtgtgacaatttctactaaaggtcaagtg 5896581  T
Q  250 atgaagttggttaaaattctagcaatcttcacagccattgatttctcatccaatcattttgaaggaccgataccaca 326  Q
    ||| ||||| |||||||| || ||||||| |||||||||||||||||||| |||||||| |||||||| ||||||||    
T  5896582 atgcagttgcttaaaattttaacaatctttacagccattgatttctcatcaaatcatttcgaaggaccaataccaca 5896658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 32 - 317
Target Start/End: Complemental strand, 3747879 - 3747594
Alignment:
Q  32 aatgttcacattcacaatcagataagcattggaaaatgattcagattgtggacatttctttcagcaatttcaatggtaagttacaagaaaaatacttcgc 131  Q
    ||||||||| ||||| | || |||||| ||||||||||||||| |||||||||||| |||||| |||||||||||| ||  ||   |||||||| ||| |    
T  3747879 aatgttcactttcactagcaaataagccttggaaaatgattcaaattgtggacattgctttcaacaatttcaatggaaaactatctgaaaaatatttcac 3747780  T
Q  132 aacatgggatagaatgatgcaagatgaagttgatgttataccagacttcatccacacacgaaacaaagattgctcatactattaggatagtgtgacggtt 231  Q
    | ||||||| ||||||||||| ||||||  ||||| | || | || || ||||  |||    |   |     | |||| ||| | |||||||||||||||    
T  3747779 agcatgggaaagaatgatgcatgatgaacatgatgatgtatcggaatttatcccgacagtggaggcattcaacccatattatcatgatagtgtgacggtt 3747680  T
Q  232 tctattaaaggtcagcaaatgaagttggttaaaattctagcaatcttcacagccattgatttctcatccaatcattttgaaggacc 317  Q
    || | |||||||||  | ||| |||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  3747679 tccaataaaggtcaagatatggagtttgttaaaattctaacaatcttcacagccattgatttctcatcgaatcattttgaaggacc 3747594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 28 - 324
Target Start/End: Complemental strand, 5557901 - 5557605
Alignment:
Q  28 atagaatgttcacattcacaatcagataagcattggaaaatgattcagattgtggacatttctttcagcaatttcaatggtaagttacaagaaaaatact 127  Q
    |||||||||||||||||||    | |||||| ||||||||||||||| ||||| || ||| |||||| |||||||||||| ||| |||  |||||||| |    
T  5557901 atagaatgttcacattcactcgaaaataagccttggaaaatgattcaaattgttgatattgctttcaacaatttcaatgggaagctacctgaaaaatatt 5557802  T
Q  128 tcgcaacatgggatagaatgatgcaagatgaagttgatgttataccagacttcatccacacacgaaacaaagattgctcatactattaggatagtgtgac 227  Q
    || || ||||||| ||||||| ||  || |||  ||||  | || |||||||  |||||||| |  |   |   |  ||||| ||  ||||||||| |||    
T  5557801 tcacatcatgggaaagaatgaagcgtgaagaaaatgataatgtatcagactttgtccacacaggggattcattattatcatattaccaggatagtgcgac 5557702  T
Q  228 ggtttctattaaaggtcagcaaatgaagttggttaaaattctagcaatcttcacagccattgatttctcatccaatcattttgaaggaccgatacca 324  Q
     ||||| | ||||||||  |||||| ||||||||||||||||| |||| || ||| ||||||| |||||||||||||||||||||||||| ||||||    
T  5557701 agtttccaataaaggtcgacaaatggagttggttaaaattctaacaatatttacaaccattgacttctcatccaatcattttgaaggaccaatacca 5557605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 204 - 317
Target Start/End: Complemental strand, 5563510 - 5563397
Alignment:
Q  204 ctcatactattaggatagtgtgacggtttctattaaaggtcagcaaatgaagttggttaaaattctagcaatcttcacagccattgatttctcatccaat 303  Q
    |||||| ||| |||||||| |||| ||||| ||||||||||| || ||  |||||||||||||| ||  ||||||||||||||||||||| |||||||||    
T  5563510 ctcatattatcaggatagtatgacagtttccattaaaggtcaacagatagagttggttaaaattttaaaaatcttcacagccattgatttatcatccaat 5563411  T
Q  304 cattttgaaggacc 317  Q
    ||||||||||||||    
T  5563410 cattttgaaggacc 5563397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 205 - 314
Target Start/End: Complemental strand, 5856860 - 5856751
Alignment:
Q  205 tcatactattaggatagtgtgacggtttctattaaaggtcagcaaatgaagttggttaaaattctagcaatcttcacagccattgatttctcatccaatc 304  Q
    ||||| ||| |||||||||||||  |||| | ||||||||| |||||| ||||| |||| |||||| |||||||||||||||||||||| ||||||||||    
T  5856860 tcatattatcaggatagtgtgacaatttccaataaaggtcaacaaatggagttgattaagattctaacaatcttcacagccattgatttatcatccaatc 5856761  T
Q  305 attttgaagg 314  Q
    ||||||||||    
T  5856760 attttgaagg 5856751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 230 - 324
Target Start/End: Complemental strand, 5612300 - 5612206
Alignment:
Q  230 tttctattaaaggtcagcaaatgaagttggttaaaattctagcaatcttcacagccattgatttctcatccaatcattttgaaggaccgatacca 324  Q
    |||||| |||||||||  | |||||||||||||||||||||  ||||||||  ||||||||||||||||||||||| ||||||||||| ||||||    
T  5612300 tttctactaaaggtcaagagatgaagttggttaaaattctaaaaatcttcatggccattgatttctcatccaatcactttgaaggaccaatacca 5612206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 237 - 324
Target Start/End: Complemental strand, 5604175 - 5604088
Alignment:
Q  237 taaaggtcagcaaatgaagttggttaaaattctagcaatcttcacagccattgatttctcatccaatcattttgaaggaccgatacca 324  Q
    ||||||||| |||||| ||||||||||||||||| |||| | ||||| ||||||||||||||||||   |||||||||||| ||||||    
T  5604175 taaaggtcaacaaatggagttggttaaaattctaacaatttacacagtcattgatttctcatccaactcttttgaaggaccaatacca 5604088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 26 - 163
Target Start/End: Complemental strand, 5612501 - 5612364
Alignment:
Q  26 ccatagaatgttcacattcacaatcagataagcattggaaaatgattcagattgtggacatttctttcagcaatttcaatggtaagttacaagaaaaata 125  Q
    ||||||||||| |||| |||| |  | |||||| ||||||||||||||| |||||||||||| | ||||   ||||||| || ||  ||| ||||| ||     
T  5612501 ccatagaatgtacacactcactagaaaataagccttggaaaatgattcaaattgtggacattgcattcaatgatttcaacggaaaactaccagaaacatt 5612402  T
Q  126 cttcgcaacatgggatagaatgatgcaagatgaagttg 163  Q
    |||| |||||||||| | ||||||||| ||||||||||    
T  5612401 cttcacaacatgggaaaaaatgatgcacgatgaagttg 5612364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 29 - 107
Target Start/End: Complemental strand, 5857033 - 5856955
Alignment:
Q  29 tagaatgttcacattcacaatcagataagcattggaaaatgattcagattgtggacatttctttcagcaatttcaatgg 107  Q
    |||||||||||||||||| |  | ||||||  |||||||||||||| ||||| |||||| |||||| ||||||||||||    
T  5857033 tagaatgttcacattcactagaaaataagccgtggaaaatgattcaaattgtcgacattgctttcaacaatttcaatgg 5856955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 275 - 329
Target Start/End: Original strand, 5890816 - 5890870
Alignment:
Q  275 tcttcacagccattgatttctcatccaatcattttgaaggaccgataccacaggt 329  Q
    |||| |||||||||||||||||||||||| ||||||||||||| |||||| ||||    
T  5890816 tctttacagccattgatttctcatccaattattttgaaggaccaataccagaggt 5890870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 324
Target Start/End: Original strand, 5572654 - 5572740
Alignment:
Q  238 aaaggtcagcaaatgaagttggttaaaattctagcaatcttcacagccattgatttctcatccaatcattttgaaggaccgatacca 324  Q
    |||||||| || ||| | || |||||||||||| || |||||||  |||| || |||||||| ||||||||||||||||| ||||||    
T  5572654 aaaggtcaacagatggatttagttaaaattctaacagtcttcacttccatcgacttctcatcgaatcattttgaaggacctatacca 5572740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 324
Target Start/End: Original strand, 5584861 - 5584947
Alignment:
Q  238 aaaggtcagcaaatgaagttggttaaaattctagcaatcttcacagccattgatttctcatccaatcattttgaaggaccgatacca 324  Q
    |||||||| || ||| | || |||||||||||| || |||||||  |||| || |||||||| ||||||||||||||||| ||||||    
T  5584861 aaaggtcaacagatggatttagttaaaattctaacagtcttcacttccatcgacttctcatcgaatcattttgaaggacctatacca 5584947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 5604350 - 5604302
Alignment:
Q  59 attggaaaatgattcagattgtggacatttctttcagcaatttcaatgg 107  Q
    |||||||||||||||| |||||||||||| ||| || ||||||||||||    
T  5604350 attggaaaatgattcaaattgtggacattgcttccaacaatttcaatgg 5604302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 277 - 324
Target Start/End: Complemental strand, 1481877 - 1481830
Alignment:
Q  277 ttcacagccattgatttctcatccaatcattttgaaggaccgatacca 324  Q
    |||||| |||||||||||||||||||||| |||||||||  |||||||    
T  1481877 ttcacaaccattgatttctcatccaatcactttgaaggattgatacca 1481830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University