View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11819_low_22 (Length: 340)
Name: NF11819_low_22
Description: NF11819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11819_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 29 - 246
Target Start/End: Original strand, 6912173 - 6912390
Alignment:
| Q |
29 |
tgtcaaccattgcaatagcagaacattgaactcttacaaaacaaagagtgaccatatacttgcatattcaagtgcatttgtttggtttaccaaataaatt |
128 |
Q |
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| T |
6912173 |
tgtcaaccattgcaatagcagaacattgaactcttacaaaacaaagagtgaccatatacttgcatattcaagtgcatttgtttggtttaccaaataaatt |
6912272 |
T |
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| Q |
129 |
ctagtttggatgttaaagaaatatctactgatgcaacaatcatattcttcataagaaattggcaaatttaaaccaactgaatttaaacaaattggatgtt |
228 |
Q |
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| T |
6912273 |
ctagtttggatgttaaagaaatatctactgatgcaacaatcatattcttcataagaaattggcaaatttaaaccaactgaatttaaacaaattggatgtt |
6912372 |
T |
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| Q |
229 |
tattttcgatcaataaac |
246 |
Q |
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| T |
6912373 |
tattttcgatcaataaac |
6912390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 261 - 325
Target Start/End: Original strand, 6912472 - 6912536
Alignment:
| Q |
261 |
catgaatacaaagttcccctgtaatagcatgtgtcataccagtattataccactatagcattaac |
325 |
Q |
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| T |
6912472 |
catgaatacaaagttcccctgtaatagcatgtgtcataccagtactataccactatagcattaac |
6912536 |
T |
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