View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11819_low_23 (Length: 334)
Name: NF11819_low_23
Description: NF11819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11819_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 46238726 - 46238503
Alignment:
| Q |
1 |
agttcacatcaattaaaaaccctaaaaaattcacaacttctttaacgttttcctccttttcctcgttaacagtaccacaacaagaataaacaaagaaata |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46238726 |
agttcacatcaattaaaaaccctaaaaaattcacaacatctttaacgttttcctccttttcctcgttaacagtaccacaacaagaataaacaaagaaata |
46238627 |
T |
|
| Q |
101 |
gcatgcatattcataggagtaaagggaggaaagtaaagggattcacataatagacaacttacatcagcaactggagctccaacgtttttcataaccgtcg |
200 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46238626 |
gcatgcatattcataggagtaaacagaggaaagtaaagggattcacataatagacaacttacatcagcaactggagctccaacgtttttcataaccgtcg |
46238527 |
T |
|
| Q |
201 |
attgtccttcgatcgtttcatgca |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
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| T |
46238526 |
attgtccttcgatcgtttcatgca |
46238503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 3455932 - 3456155
Alignment:
| Q |
1 |
agttcacatcaattaaaaaccctaaaaaattcacaacttctttaacgttttcctccttttcctcgttaacagtaccacaacaagaataaacaaagaaata |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3455932 |
agttcacatcaatttaaaaccctaaaaaattcacaacttctttaacgttttcctccttttcctcgttaacagtaccacaacaagaataaacaaagaaata |
3456031 |
T |
|
| Q |
101 |
gcatgcatattcataggagtaaagggaggaaagtaaagggattcacataatagacaacttacatcagcaactggagctccaacgtttttcataaccgtcg |
200 |
Q |
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|||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3456032 |
gcatgcatattcttaggagtaaacagaagaaagtaaagggattcacataatagacaacttacatcagcaactggagctccaacgtttttcataaccgtcg |
3456131 |
T |
|
| Q |
201 |
attgtccttcgatcgtttcatgca |
224 |
Q |
| |
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|||| |||||||| ||||| |||| |
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|
| T |
3456132 |
attgcccttcgattgtttcctgca |
3456155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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