View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11819_low_30 (Length: 240)
Name: NF11819_low_30
Description: NF11819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11819_low_30 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 7595844 - 7595621
Alignment:
| Q |
17 |
atcaccaaaattcaccacaaaatttaaacaactaaggatcacaattcacaagtatagaattcattttccattagcttgatagttttgtttatagcaaaaa |
116 |
Q |
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| T |
7595844 |
atcaccaaaattcaccacaaaatttaaacaactaaggatcacaattcacaagtatagaattcattttccattagcttgatagttttgtttatagcaaaaa |
7595745 |
T |
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| Q |
117 |
tagtggataccctgtttaatttaatagctacagtaccttcaatcatcgataggatataccttcaatttataaatttcacgagctatcttgatgcgcttat |
216 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
7595744 |
tagtggctaccctgtttaatttaatagctacagtaccttcaatcatcgataggatataccttcaatttatgaatttcacgagctatcttgatgcgcttat |
7595645 |
T |
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| Q |
217 |
aaaaattaactgaaaacaatttat |
240 |
Q |
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|||||||||||||||||||||||| |
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| T |
7595644 |
aaaaattaactgaaaacaatttat |
7595621 |
T |
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