View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11819_low_5 (Length: 715)
Name: NF11819_low_5
Description: NF11819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11819_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 645; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 645; E-Value: 0
Query Start/End: Original strand, 1 - 693
Target Start/End: Complemental strand, 40797597 - 40796906
Alignment:
| Q |
1 |
ccatgaagccaatatatatcattgaacaaaatcatgacaatttagtctgaattagaaataatagcgacaggaatgccaaggcagacaaacttaagatttc |
100 |
Q |
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| T |
40797597 |
ccatgaagccaatatatatcattgaacaaaatcataacaatttagtctgaattagaaataatagtgacaggaatgccaagccagacaaacttaagatttc |
40797498 |
T |
|
| Q |
101 |
aacacacgctgtgcaaccaagtccatcatcctgttagcccttatattgaacaattaactcaaatgtagaattcatggatacatcaaactgtgtagcatgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40797497 |
aacacacgctgtgcaaccaagtccatcatcctgttagccctgatattgaacaatgaactcaaatgtagaattcatggatacatcaaactgtgtagcatgt |
40797398 |
T |
|
| Q |
201 |
gctatgctggcgatgttatttaacgtaccacattactaccctcatttattcttaaaatctactctctaaatccttcaagatcactgcataagttgataaa |
300 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40797397 |
gctatgctggcgatgttatttaacgtaccacgttactaccctcatttattcttaaaatctactctctaaatccttcaagatcactgcataagttgataaa |
40797298 |
T |
|
| Q |
301 |
tgttttgttaaccacaaacttggaggttaaacatctcaatgaacttcaaaattaaaaacaaatttcatgtaaactttcaaacgccaaagtatcgagtaaa |
400 |
Q |
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| T |
40797297 |
tgttttgtcaaccacaaacttggaggttaaacatc-caatgaacttcaaaattaaaaacaaatttcatgtaaactttcaaacgccaaagtatcgagtaaa |
40797199 |
T |
|
| Q |
401 |
gaacatggtattggtattggaaacaatgagcagaattttaatagtcctaaagtaaattttcactagtcttcactcatcagtgcgcatatccaaattgaat |
500 |
Q |
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| T |
40797198 |
gaacatggtattggtattggaaacaatgagcagaattttaatagtcctaaagtaaattttcactagtcttcactcatcagtgcgcatatccaaattgaat |
40797099 |
T |
|
| Q |
501 |
gaattgtatgaaacagaaacaaaggcccttgtgcttctaatgacaattaaaaacatatctatgcgccaaggtttacaaccctctttgaatatcacattgt |
600 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
40797098 |
gaattgtatgaaacagaaacaaaggcccttgtgcttctaatgacaattaaaaacatatctatgcggcaaggtatacaaccctctttgaatatcacattgt |
40796999 |
T |
|
| Q |
601 |
ccactctatggtttagacttagagtgaatcaacaatagcccaattcttattcaacacagtacaaagtaaaactacagtggtttaatcttcaat |
693 |
Q |
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| T |
40796998 |
ccactctatggtttagacttagagtgaatcaacaatagcccaattcttattcaacacagtacaaagtaaaaccacagtggtttaatcttcaat |
40796906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 477 - 564
Target Start/End: Original strand, 8621058 - 8621144
Alignment:
| Q |
477 |
tcagtgcgcatatccaaattgaatgaattgtatgaaacagaaacaaaggcccttgtgcttctaatgacaattaaaaacatatctatgc |
564 |
Q |
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||||||| || |||||| |||||||||||||||||||||| ||| || ||||| || ||| ||| |||||||||||||||||||||| |
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| T |
8621058 |
tcagtgcacacatccaagttgaatgaattgtatgaaacag-aaccgagccccttctgattcgaataacaattaaaaacatatctatgc |
8621144 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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