View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11819_low_6 (Length: 687)

Name: NF11819_low_6
Description: NF11819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11819_low_6
NF11819_low_6
[»] chr3 (18 HSPs)
chr3 (14-671)||(9108496-9109156)
chr3 (78-454)||(8755352-8755723)
chr3 (269-457)||(8746911-8747099)
chr3 (246-460)||(9101159-9101376)
chr3 (320-460)||(9019296-9019436)
chr3 (269-460)||(9029070-9029261)
chr3 (282-460)||(9034590-9034768)
chr3 (320-452)||(8965284-8965416)
chr3 (282-435)||(9015393-9015546)
chr3 (246-460)||(9023381-9023598)
chr3 (320-423)||(8962569-8962672)
chr3 (256-433)||(9026095-9026275)
chr3 (320-438)||(9112115-9112233)
chr3 (320-433)||(8957129-8957242)
chr3 (320-452)||(8988353-8988485)
chr3 (556-591)||(9029411-9029446)
chr3 (556-593)||(9023740-9023777)
chr3 (560-592)||(9015719-9015751)


Alignment Details
Target: chr3 (Bit Score: 619; Significance: 0; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 619; E-Value: 0
Query Start/End: Original strand, 14 - 671
Target Start/End: Original strand, 9108496 - 9109156
Alignment:
Q  14 aacctgtggaaacatctaacgactgacccattcatataataaaacgtcggcataattgtttctcaagctgtccacgttatttttgggccccacgcgtccc 113  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9108496 aacctatggaaacatctaacgactgacccattcatataataaaacgtcggcataattgtttctcaagctgtccacgttatttttgggccccacgcgtccc 9108595  T
Q  114 ttcaatcttataaatagttaaatacttccacaccctttcaccaccaattcaacaacatacacactttgcattgcttcttcttgattcacaattttccact 213  Q
    | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9108596 tccaatcttataaatagttaaatatttccacaccctttcaccaccaattcaacaacatacacactttgcattgcttcttcttgattcacaattttccact 9108695  T
Q  214 gttttaattttcaactttctctgtttctatatatagtgttgcaatggcatcatcaatgaagttttttgccttctttttcgtcgttatctttgctgcctcc 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9108696 gttttaattttcaactttctctgtttctatatatagtgttgcaatggcatcatcaatgaagttttttgccttctttttcgtcgttatctttgctgcctcc 9108795  T
Q  314 ctggtgtcggctcaagacctcagtccctcattggctccagcatcaggtcctgatgtcggagctgccggatctgttacaaattcagtggccatgatcggag 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9108796 ctggtgtcggctcaagacctcagtccctcattggctccagcatcaggtcctgatgtcggagctgccggatctgttacaagttcagtggccatgatcggag 9108895  T
Q  414 cttcaattgtcttgtcaatgcttgcactcttgaagaactaaaaacatagtcgttatttttgttttattctgtgctagtgatgattattaagtgatgatct 513  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  9108896 cttcaattgtcttgtcaatgcttgcactcttgaagaactaaaaacatagtcgttatttttgttttattctgtgctagtgatgattattaattgatgatct 9108995  T
Q  514 atgtatacttgag---agcgagagaataatttaatttcaagagtgtttattttcacatttcattatttattgtaggtgttaagtcacaacaaaaaaggat 610  Q
    || ||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9108996 atatatacttgagatcagcgagagaataatttaatttcaagagtgtttattttcacatttcattatttattgtaggtgttaagtcacaacaaaaaaggat 9109095  T
Q  611 tttatcatccttgttgaagaattattattagcatattattcatatttttgtgtaatatata 671  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  9109096 tttatcatccttgtggaagaattattattagcatattattcatatttttgtgtaatatata 9109156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 78 - 454
Target Start/End: Original strand, 8755352 - 8755723
Alignment:
Q  78 aagctgtccacgttatttttgggccccacgcgtcccttcaatcttataaatagttaaatacttccacaccctttcaccaccaat---tcaacaacataca 174  Q
    |||||||||||||||||| ||||||||||||||  |  ||||||||||||||        || |||||| |||||||||| |||   |||| ||||||||    
T  8755352 aagctgtccacgttatttgtgggccccacgcgtttcaccaatcttataaata--------ctcccacacactttcaccacaaataattcaaaaacataca 8755443  T
Q  175 cactttgcattgcttcttcttgattcacaattttccactgttttaattttcaactttctctgtttctatatatagtgttgcaatggcatcatcaatgaag 274  Q
     | ||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| | |||||||||||||||||||||||    
T  8755444 taatttacatttcttcttcttgattcacaattttccactgttttaattttcaattttctctgtttccatatataattttgcaatggcatcatcaatgaag 8755543  T
Q  275 ttttttgccttctttttcgtcgttatctttgctgcctccctggtgtcggctcaagacctcagtccctcattggctccagcatcaggtcctgatgtcggag 374  Q
    ||||| |||||||||||||| ||| |||| || ||  || |||  ||||||||||||||||||||||| |||||||| ||| ||| |||||||| ||| |    
T  8755544 tttttcgccttctttttcgttgttgtcttcgcagcagccgtggcttcggctcaagacctcagtccctcgttggctccggcaccagatcctgatgccggtg 8755643  T
Q  375 ctgccggatctgttacaaattcagtggccatgatcggagcttcaattgtcttgtcaatgcttgcactcttgaagaactaa 454  Q
    |||| |||||||||||||||||||| || ||||| |||||||| ||| | ||||| ||||| ||  |||| |||||||||    
T  8755644 ctgctggatctgttacaaattcagttgctatgattggagcttcgattattttgtctatgctcgccatcttcaagaactaa 8755723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 269 - 457
Target Start/End: Original strand, 8746911 - 8747099
Alignment:
Q  269 atgaagttttttgccttctttttcgtcgttatctttgctgcctccctggtgtcggctcaagacctcagtccctcattggctccagcatcaggtcctgatg 368  Q
    |||||||| ||  |||||||||||||| | ||||| || ||| ||||||  || || ||||||||||||||||| |||||||||||| ||||||||||||    
T  8746911 atgaagttcttctccttctttttcgtcttcatcttcgccgccaccctggcctctgcccaagacctcagtccctcgttggctccagcaccaggtcctgatg 8747010  T
Q  369 tcggagctgccggatctgttacaaattcagtggccatgatcggagcttcaattgtcttgtcaatgcttgcactcttgaagaactaaaaa 457  Q
    | |||||||  ||||||||||||||||||||||| ||||| |||| ||||||||| ||||||||||| ||  |||| ||| ||||||||    
T  8747011 ttggagctgttggatctgttacaaattcagtggctatgattggagtttcaattgtgttgtcaatgctcgccatcttcaagcactaaaaa 8747099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 246 - 460
Target Start/End: Original strand, 9101159 - 9101376
Alignment:
Q  246 atagtgttgcaatggcatcatca---atgaagttttttgccttctttttcgtcgttatctttgctgcctccctggtgtcggctcaagacctcagtccctc 342  Q
    ||||| |||||||||||||||||   |||||||| ||  |||||||| | ||| | ||||| || ||| || |||  || || ||| |||||||||||||    
T  9101159 atagttttgcaatggcatcatcagctatgaagttcttccccttctttatggtcatcatcttcgccgccaccgtggcctctgcccaaaacctcagtccctc 9101258  T
Q  343 attggctccagcatcaggtcctgatgtcggagctgccggatctgttacaaattcagtggccatgatcggagcttcaattgtcttgtcaatgcttgcactc 442  Q
     |||||||||||| |||| |||||||  |||||||| || |||||||||| ||||||||| |||||||||| ||||||||| ||||||||||| ||  ||    
T  9101259 gttggctccagcaccaggccctgatgctggagctgctggttctgttacaagttcagtggctatgatcggagtttcaattgtattgtcaatgctcgccatc 9101358  T
Q  443 ttgaagaactaaaaacat 460  Q
    || ||| |||||||||||    
T  9101359 tttaagcactaaaaacat 9101376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 320 - 460
Target Start/End: Original strand, 9019296 - 9019436
Alignment:
Q  320 tcggctcaagacctcagtccctcattggctccagcatcaggtcctgatgtcggagctgccggatctgttacaaattcagtggccatgatcggagcttcaa 419  Q
    |||||||||||||| ||||||||||  ||||| ||| ||||||||||||| || |||   ||||||||||| | |||||| || ||||||||||||||||    
T  9019296 tcggctcaagaccttagtccctcatccgctccggcaccaggtcctgatgttggggcttgtggatctgttacgagttcagttgctatgatcggagcttcaa 9019395  T
Q  420 ttgtcttgtcaatgcttgcactcttgaagaactaaaaacat 460  Q
    |||| ||||||||||||||  |||||||||||| |||||||    
T  9019396 ttgtgttgtcaatgcttgccatcttgaagaactgaaaacat 9019436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 269 - 460
Target Start/End: Original strand, 9029070 - 9029261
Alignment:
Q  269 atgaagttttttgccttctttttcgtcgttatctttgctgcctccctggtgtcggctcaagacctcagtccctcattggctccagcatcaggtcctgatg 368  Q
    |||||||| ||  |||||||||| ||| | ||||| || ||| || |||  || || |||||||| ||||| || |||||||||||| ||||||||||||    
T  9029070 atgaagttcttctccttctttttggtcatcatcttcgccgccaccgtggcctctgcccaagaccttagtccttcgttggctccagcaccaggtcctgatg 9029169  T
Q  369 tcggagctgccggatctgttacaaattcagtggccatgatcggagcttcaattgtcttgtcaatgcttgcactcttgaagaactaaaaacat 460  Q
      |||||||| |||||| |||||| ||||| ||| |||||||||| ||||||||| ||||||||||| ||  |||| ||| |||||||||||    
T  9029170 ctggagctgctggatctattacaagttcagcggctatgatcggagtttcaattgtgttgtcaatgctcgccatcttcaagcactaaaaacat 9029261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 282 - 460
Target Start/End: Original strand, 9034590 - 9034768
Alignment:
Q  282 ccttctttttcgtcgttatctttgctgcctccctggtgtcggctcaagacctcagtccctcattggctccagcatcaggtcctgatgtcggagctgccgg 381  Q
    |||||||||||||||  ||||| ||||||  | |||  || || |||||||| ||||| || |||||||| ||| ||||||||||||  |||||||| ||    
T  9034590 ccttctttttcgtcgccatcttcgctgccatcgtggcctctgcccaagaccttagtccttcgttggctccggcaccaggtcctgatgctggagctgctgg 9034689  T
Q  382 atctgttacaaattcagtggccatgatcggagcttcaattgtcttgtcaatgcttgcactcttgaagaactaaaaacat 460  Q
    ||||||| ||| ||| ||||| |||||||||| ||||||||| ||||||||||| ||  |||| ||| |||||||||||    
T  9034690 atctgttgcaagttcggtggctatgatcggagtttcaattgtgttgtcaatgctcgccatcttcaagcactaaaaacat 9034768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 320 - 452
Target Start/End: Original strand, 8965284 - 8965416
Alignment:
Q  320 tcggctcaagacctcagtccctcattggctccagcatcaggtcctgatgtcggagctgccggatctgttacaaattcagtggccatgatcggagcttcaa 419  Q
    ||||| |||||||| ||||| || |||||||||||| || ||||||| |  |||||||||||||||||||||| |||  |||| ||||||||||||||||    
T  8965284 tcggcccaagaccttagtccgtcgttggctccagcaccaagtcctgacgctggagctgccggatctgttacaagttctatggcaatgatcggagcttcaa 8965383  T
Q  420 ttgtcttgtcaatgcttgcactcttgaagaact 452  Q
    ||||  |||||||||| ||| |||| |||||||    
T  8965384 ttgtgctgtcaatgctcgcaatcttcaagaact 8965416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 282 - 435
Target Start/End: Original strand, 9015393 - 9015546
Alignment:
Q  282 ccttctttttcgtcgttatctttgctgcctccctggtgtcggctcaagacctcagtccctcattggctccagcatcaggtcctgatgtcggagctgccgg 381  Q
    |||||||||||||||  || || ||||||||  | |  ||||||||||||||||| ||||| ||| |||| ||| |||||||||||| |||||| || ||    
T  9015393 ccttctttttcgtcgccatgttggctgcctctatcgcctcggctcaagacctcagcccctcgttgtctccggcaccaggtcctgatgccggagcagctgg 9015492  T
Q  382 atctgttacaaattcagtggccatgatcggagcttcaattgtcttgtcaatgct 435  Q
    || |||||||||||||||| | ||| | |||| ||||||||| |||||||||||    
T  9015493 atatgttacaaattcagtgactatggttggagtttcaattgtattgtcaatgct 9015546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 246 - 460
Target Start/End: Original strand, 9023381 - 9023598
Alignment:
Q  246 atagtgttgcaatggcatcatca---atgaagttttttgccttctttttcgtcgttatctttgctgcctccctggtgtcggctcaagacctcagtccctc 342  Q
    ||||| |||||||||||||||||   || ||||| ||  |||||||||| ||| | ||||| || ||| |  |||  || || |||||||| ||||||||    
T  9023381 atagttttgcaatggcatcatcagctataaagttcttctccttctttttggtcatcatcttcgccgccacagtggcctctgcccaagaccttagtccctc 9023480  T
Q  343 attggctccagcatcaggtcctgatgtcggagctgccggatctgttacaaattcagtggccatgatcggagcttcaattgtcttgtcaatgcttgcactc 442  Q
     |||||||| ||| ||||||||||||  |||||||| ||||||||||||| ||||||||| ||| |||||  |||  |||| ||||||||||| ||  ||    
T  9023481 gttggctccggcaccaggtcctgatgctggagctgctggatctgttacaagttcagtggctatggtcggaatttcggttgtattgtcaatgctcgccatc 9023580  T
Q  443 ttgaagaactaaaaacat 460  Q
    || ||| |||||||||||    
T  9023581 ttcaagcactaaaaacat 9023598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 320 - 423
Target Start/End: Original strand, 8962569 - 8962672
Alignment:
Q  320 tcggctcaagacctcagtccctcattggctccagcatcaggtcctgatgtcggagctgccggatctgttacaaattcagtggccatgatcggagcttcaa 419  Q
    ||||| |||||||| |||||||| || ||||||||| ||||||||||||  |||| ||||||||||||| ||  ||| ||||| ||||||||||||||||    
T  8962569 tcggcccaagaccttagtccctcgttagctccagcaccaggtcctgatgctggagttgccggatctgttgcaggttctgtggctatgatcggagcttcaa 8962668  T
Q  420 ttgt 423  Q
    ||||    
T  8962669 ttgt 8962672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 256 - 433
Target Start/End: Original strand, 9026095 - 9026275
Alignment:
Q  256 aatggcatcatca---atgaagttttttgccttctttttcgtcgttatctttgctgcctccctggtgtcggctcaagacctcagtccctcattggctcca 352  Q
    |||||||||||||   |||||||| ||  |||||||||| ||| | ||||| || ||| || |||  || || ||||| || ||||| || |||||||||    
T  9026095 aatggcatcatcagctatgaagttcttctccttctttttggtcatcatcttcgccgccaccgtggcctctgcccaagatcttagtccttcgttggctcca 9026194  T
Q  353 gcatcaggtcctgatgtcggagctgccggatctgttacaaattcagtggccatgatcggagcttcaattgtcttgtcaatg 433  Q
    ||| ||||| ||||||  |||| ||| ||||||||||||| ||||||||| |||||||||| |||| |||| |||||||||    
T  9026195 gcaccaggttctgatgctggagttgctggatctgttacaagttcagtggcaatgatcggagtttcagttgtattgtcaatg 9026275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 320 - 438
Target Start/End: Original strand, 9112115 - 9112233
Alignment:
Q  320 tcggctcaagacctcagtccctcattggctccagcatcaggtcctgatgtcggagctgccggatctgttacaaattcagtggccatgatcggagcttcaa 419  Q
    ||||| ||||||||||||||||| |||||||| ||| |||  ||||||  ||||||||  |||||| |||||||| ||||||| ||||| |||||||  |    
T  9112115 tcggcccaagacctcagtccctcgttggctccggcaccagcacctgataccggagctgttggatctcttacaaatccagtggctatgatgggagctttga 9112214  T
Q  420 ttgtcttgtcaatgcttgc 438  Q
    |||| ||||||||||||||    
T  9112215 ttgtgttgtcaatgcttgc 9112233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 320 - 433
Target Start/End: Original strand, 8957129 - 8957242
Alignment:
Q  320 tcggctcaagacctcagtccctcattggctccagcatcaggtcctgatgtcggagctgccggatctgttacaaattcagtggccatgatcggagcttcaa 419  Q
    ||||| |||||||| ||||| || || ||||||||| | |||||||| |  ||||||||||||| |||||||| ||| ||||| ||||||||||||||||    
T  8957129 tcggcccaagaccttagtccgtcgttagctccagcacccggtcctgacgctggagctgccggatttgttacaagttctgtggctatgatcggagcttcaa 8957228  T
Q  420 ttgtcttgtcaatg 433  Q
    ||||  ||||||||    
T  8957229 ttgtgctgtcaatg 8957242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 320 - 452
Target Start/End: Original strand, 8988353 - 8988485
Alignment:
Q  320 tcggctcaagacctcagtccctcattggctccagcatcaggtcctgatgtcggagctgccggatctgttacaaattcagtggccatgatcggagcttcaa 419  Q
    ||||| |||||||| |||||||| ||| |||||||| |||||||||| || ||||||||| | |||| ||||| ||  ||||| ||||||||||||||||    
T  8988353 tcggcccaagaccttagtccctcgttgtctccagcaccaggtcctgacgttggagctgccagttctgctacaagttatgtggctatgatcggagcttcaa 8988452  T
Q  420 ttgtcttgtcaatgcttgcactcttgaagaact 452  Q
    | ||  |||||||||| ||  |||| |||||||    
T  8988453 tcgtactgtcaatgctcgctatcttcaagaact 8988485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 556 - 591
Target Start/End: Original strand, 9029411 - 9029446
Alignment:
Q  556 tttattttcacatttcattatttattgtaggtgtta 591  Q
    |||||||| |||||||||||||||||||||||||||    
T  9029411 tttatttttacatttcattatttattgtaggtgtta 9029446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 556 - 593
Target Start/End: Original strand, 9023740 - 9023777
Alignment:
Q  556 tttattttcacatttcattatttattgtaggtgttaag 593  Q
    |||||||| | |||||||||||||||||||||||||||    
T  9023740 tttatttttatatttcattatttattgtaggtgttaag 9023777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 560 - 592
Target Start/End: Original strand, 9015719 - 9015751
Alignment:
Q  560 ttttcacatttcattatttattgtaggtgttaa 592  Q
    |||| ||||||||||||||||||||||||||||    
T  9015719 tttttacatttcattatttattgtaggtgttaa 9015751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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