View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11819_low_7 (Length: 655)
Name: NF11819_low_7
Description: NF11819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11819_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 586; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 12 - 638
Target Start/End: Original strand, 49427512 - 49428134
Alignment:
| Q |
12 |
acagagtagacgaactcattaaagcaaaaaagggcttctcggtgtttcaagtccacatccaatctgagagtggggacagagagccagagatgcgtccatc |
111 |
Q |
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| T |
49427512 |
acagagtagacgaactcattaaagcaaaaaagggcttctcggtgtttcaagtccacatccaatctgagagtggggacagagagccagagatgcgtccatc |
49427611 |
T |
|
| Q |
112 |
tcttcgaaaggacactagtggcaaccgcctgttcggttgggagaaaagagataatatgacagatgacacggtctggtaaatcgctgatcacataaggacg |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
49427612 |
tcttcgaaaggacactagtggcaaccgcctgttcggttgggagaaaagagataatatgacagatgacacggtctggtaaatcgctgatcacatcacgacg |
49427711 |
T |
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| Q |
212 |
atcatccccggttgatgacattaatttcttctagcgtaagagaacttgaattttctacataacatacaacatactaacattaacattagaccacaaagga |
311 |
Q |
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| T |
49427712 |
atcatccccggttgatgacatt----tcttctagcgtaagagaacttgaattttctacataacatacaacatactaacattaacattagaccacaaagga |
49427807 |
T |
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| Q |
312 |
aactgattattgttgaagtgataattccaaaccaacgaaagagacaagtacacaaagcaaaatacatcatccaatatttagatcaattaacgatgccgta |
411 |
Q |
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| T |
49427808 |
aactgattattgttgaagtgataattccaaaccaacgaaagagacaagtacacaaagcaaaatacatcatccaatatttagatcaattaacgatgccgta |
49427907 |
T |
|
| Q |
412 |
taaatatatgaagctttgtcgtctttgtttgaagttgatacaaatactgaccacatgacaggtactaatataattgaatcatattcattgaataaacgaa |
511 |
Q |
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| T |
49427908 |
taaatatatgaagctttgtcgtctttgtttgaaattgatacaaatactgaccacatgacaggtactaatataattgaatcatattcattgaataaacgaa |
49428007 |
T |
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| Q |
512 |
aatatgttatgaatttgtaaagagatggaaaaggagacatacataccttgatttgattcgtacgaataccagcagcaagagaaggtcgtattcctattta |
611 |
Q |
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| T |
49428008 |
aatatgttatgaatttgtaaagagatggaaaaggagacatacataccttgatttgattcgtacgaataccagcagcaagagggggtcgtattcctattta |
49428107 |
T |
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| Q |
612 |
tatatacgttgtagcttccctacttct |
638 |
Q |
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|||||| |||||||||||||||||||| |
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| T |
49428108 |
tatatatgttgtagcttccctacttct |
49428134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 177
Target Start/End: Original strand, 49446505 - 49446576
Alignment:
| Q |
106 |
tccatctcttcgaaaggacactagtggcaaccgcctgttcggttgggagaaaagagataatatgacagatga |
177 |
Q |
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|||| ||||| | |||||||||||||||||| || |||| ||| ||||||||||||| |||||||||||||| |
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| T |
49446505 |
tccacctctttgcaaggacactagtggcaacagcttgtttggtagggagaaaagagagaatatgacagatga |
49446576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 100 - 169
Target Start/End: Original strand, 49439011 - 49439080
Alignment:
| Q |
100 |
gatgcgtccatctcttcgaaaggacactagtggcaaccgcctgttcggttgggagaaaagagataatatg |
169 |
Q |
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||||| |||||||||| || ||||| ||||||||||| |||||| ||||||||||||||||| |||||| |
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| T |
49439011 |
gatgcttccatctcttggataggacgctagtggcaacaacctgtttggttgggagaaaagagagaatatg |
49439080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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