View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11819_low_8 (Length: 653)
Name: NF11819_low_8
Description: NF11819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11819_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 525; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 39 - 632
Target Start/End: Original strand, 38747743 - 38748333
Alignment:
| Q |
39 |
tgaaccgtcattgaaattcatcccttcaaaagaacccaaaagatcaataagcatgtctctataacgaagattgttactattaatcgaagaaccatagcgt |
138 |
Q |
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| T |
38747743 |
tgaaccgtcattgaaattcatcccttcaaaagaacccaaaagatcaataagcatgtctctataacgaagattgttactattaattgaagaaccgtagcgt |
38747842 |
T |
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| Q |
139 |
gaaagcgatgaaacaccgtttcgtggcttcatcggagacataggtggtgatgccggaggtgaagaaaaatgagacataccaaaaagtgttgaagttggag |
238 |
Q |
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| T |
38747843 |
gaaagcgatgaaacaccgtttcgtggcttcatcggagacataggtggtgatgccggaggtgaagaaaaatgagacataccaaaaagtgttgaagttggag |
38747942 |
T |
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| Q |
239 |
aattattagcaccattaccattacc------attaccaccacagtgacaaaacaaacaacaattgtttgattttgaagcaacatggttattcaaaagctt |
332 |
Q |
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| T |
38747943 |
aattattagcaccattaccattaccgttaccattaccaccacagtgacaaaacaaacaacaattgtttgattttgaagcaacatggttattcaaaagctt |
38748042 |
T |
|
| Q |
333 |
gttatttttcttgttgcatgaaaaatgttcatttgaagatggagaagatgatgtaattggaaggattcttaattgacgaggagtgtgtgcaaagaaacaa |
432 |
Q |
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| T |
38748043 |
gttatttttcttgttgcatgaaaaatgttcatttgaag---------atgatgtaactggaaggattcttaattgacgaggagtgtgtgcaaagaaacaa |
38748133 |
T |
|
| Q |
433 |
acttttctcttacagtttttaccatctttgcatgcttcagttctgtatctagcaggatgaagccagcattcaaaaacgccatgagcgaattcacaagtat |
532 |
Q |
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| T |
38748134 |
acttttctcttacagtttttaccatctttgcatgcttcagttctgtatctagcaggatgaagccagcattcaaaaacgccatgagcgaattcacaagtat |
38748233 |
T |
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| Q |
533 |
cgccgcggttacagccaccgcggcgatactcagggcaaaccgtccctgagtaatgaaaccgccgtggatcacggcggcgagctttctcaccggggtgagc |
632 |
Q |
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| T |
38748234 |
caccgcggttacagccaccgcggcgatactcagggcaaactgtccctgagtaatgaaaccgccgtggatcacggcggcgagctttctcaccggggtgagc |
38748333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 405 - 527
Target Start/End: Complemental strand, 30385830 - 30385708
Alignment:
| Q |
405 |
ttgacgaggagtgtgtgcaaagaaacaaacttttctcttacagtttttaccatctttgcatgcttcagttctgtatctagcaggatgaagccagcattca |
504 |
Q |
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| T |
30385830 |
ttgacgaggtgtatgagcaaaaaaacaaatttttcgcttacaatttttaccatctttacaagcttcagttctataccttgaagggtgcaaccagcactca |
30385731 |
T |
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| Q |
505 |
aaaacgccatgagcgaattcaca |
527 |
Q |
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| T |
30385730 |
aaaactccgtgggagaattcaca |
30385708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 471 - 521
Target Start/End: Complemental strand, 47894012 - 47893962
Alignment:
| Q |
471 |
agttctgtatctagcaggatgaagccagcattcaaaaacgccatgagcgaa |
521 |
Q |
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| T |
47894012 |
agttctgtaacgagaaggatgaagccagcattcaaaaacaccatgagcgaa |
47893962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 472 - 508
Target Start/End: Complemental strand, 33648054 - 33648018
Alignment:
| Q |
472 |
gttctgtatctagcaggatgaagccagcattcaaaaa |
508 |
Q |
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| T |
33648054 |
gttctgtattgagcaggatgaagccagcattcaaaaa |
33648018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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