View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11820_low_10 (Length: 230)
Name: NF11820_low_10
Description: NF11820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11820_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 44236065 - 44236278
Alignment:
| Q |
1 |
attgaaatgcctcagcgaattgagtaacagttacaaatctgtatggttgatctctgcgcacccagtactgtgcttgatcctttctggaagttacttcttg |
100 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
44236065 |
attgaaacgcctcagcgaattgagtaacagttacaaatctgtatggttgatctctgcgcacccagtactgtgcttgatcctttttggaagttacttcttg |
44236164 |
T |
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| Q |
101 |
aagaaagtcagcggcacctttcctttcaggacatttgaaacccattgtttcaaaaaagtcaagaacatattcgcgggggccatggtatacaacttggcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44236165 |
aagaaagtcagcggcacctttcctttcaggacatttgaaacccattgtttcaaaaaagtcaagaacatattcgcgggggccatggtatacaacttggcca |
44236264 |
T |
|
| Q |
201 |
tcagagattaagat |
214 |
Q |
| |
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|||||||||||||| |
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| T |
44236265 |
tcagagattaagat |
44236278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 44225251 - 44225464
Alignment:
| Q |
1 |
attgaaatgcctcagcgaattgagtaacagttacaaatctgtatggttgatctctgcgcacccagtactgtgcttgatcctttctggaagttacttcttg |
100 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
44225251 |
attgaaacgcctcagcgaattgagtaacagttacaaatctgtatggttgatctctgcgcacccagtactgtgcttgatcctttttggaagttacttcttg |
44225350 |
T |
|
| Q |
101 |
aagaaagtcagcggcacctttcctttcaggacatttgaaacccattgtttcaaaaaagtcaagaacatattcgcgggggccatggtatacaacttggcca |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44225351 |
aagaaagtcagcagcacctttcctttcaggacatttgaaacccattgtttcaaaaaagtcaagaacatattcgcgggggccatggtatacaacttggcca |
44225450 |
T |
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| Q |
201 |
tcagagattaagat |
214 |
Q |
| |
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||||| |||||||| |
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| T |
44225451 |
tcagaaattaagat |
44225464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 44213090 - 44213303
Alignment:
| Q |
1 |
attgaaatgcctcagcgaattgagtaacagttacaaatctgtatggttgatctctgcgcacccagtactgtgcttgatcctttctggaagttacttcttg |
100 |
Q |
| |
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||||||||||||| || |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
44213090 |
attgaaatgcctcggcaaattgagtaacagttacatatcggtatggttgatctctgcgcacccagtactgtgcttgatcctttttggatgttacttcttg |
44213189 |
T |
|
| Q |
101 |
aagaaagtcagcggcacctttcctttcaggacatttgaaacccattgtttcaaaaaagtcaagaacatattcgcgggggccatggtatacaacttggcca |
200 |
Q |
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|||||| ||||| ||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44213190 |
aagaaaatcagcaacacctttcctttcaggacatttgaaacccatagattcgaaaaagtcaagaacatattcgcgggggccatggtatacaacttggcca |
44213289 |
T |
|
| Q |
201 |
tcagagattaagat |
214 |
Q |
| |
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||||| |||||||| |
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| T |
44213290 |
tcagatattaagat |
44213303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 9e-23; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 91 - 205
Target Start/End: Complemental strand, 2884481 - 2884367
Alignment:
| Q |
91 |
ttacttcttgaagaaagtcagcggcacctttcctttcaggacatttgaaacccattgtttcaaaaaagtcaagaacatattcgcgggggccatggtatac |
190 |
Q |
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||||||||||||||||||| || ||||||||||| ||||||||||||||||| | || ||||||||| ||||||| || |||||| || || ||||| || |
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| T |
2884481 |
ttacttcttgaagaaagtccgctgcacctttcctctcaggacatttgaaaccaactgattcaaaaaattcaagaatatgttcgcgaggtccttggtagac |
2884382 |
T |
|
| Q |
191 |
aacttggccatcaga |
205 |
Q |
| |
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|| ||| |||||||| |
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| T |
2884381 |
aatttgaccatcaga |
2884367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 91 - 168
Target Start/End: Original strand, 2900483 - 2900560
Alignment:
| Q |
91 |
ttacttcttgaagaaagtcagcggcacctttcctttcaggacatttgaaacccattgtttcaaaaaagtcaagaacat |
168 |
Q |
| |
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|||||||||||||||||||||| | |||||||| ||||||||||||||||| | || |||||||||||||||||||| |
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| T |
2900483 |
ttacttcttgaagaaagtcagctacccctttcctctcaggacatttgaaaccaactgattcaaaaaagtcaagaacat |
2900560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 2884679 - 2884598
Alignment:
| Q |
1 |
attgaaatgcctcagcgaattgagtaacagttacaaatctgtatggttgatctctgcgcacccagtactgtgcttgatcctt |
82 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||||||| |||||| ||||| ||||| |||||||||| |
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| T |
2884679 |
attgaaatgcctcagcaaattgagtaacagttacaaacctgtatggtttttctctgtcaacccaatactgctcttgatcctt |
2884598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 91 - 205
Target Start/End: Complemental strand, 2874487 - 2874373
Alignment:
| Q |
91 |
ttacttcttgaagaaagtcagcggcacctttcctttcaggacatttgaaacccattgtttcaaaaaagtcaagaacatattcgcgggggccatggtatac |
190 |
Q |
| |
|
||||||||||||| || ||||| | |||||||| ||||||||||||||||| || | ||||||||| |||||||||| ||| || || || ||||| || |
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| T |
2874487 |
ttacttcttgaaggaaatcagcaacgcctttcctctcaggacatttgaaaccaatagattcaaaaaattcaagaacattttcacgaggtccttggtaaac |
2874388 |
T |
|
| Q |
191 |
aacttggccatcaga |
205 |
Q |
| |
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|| || |||||||| |
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| T |
2874387 |
aatttcaccatcaga |
2874373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 2899881 - 2899962
Alignment:
| Q |
1 |
attgaaatgcctcagcgaattgagtaacagttacaaatctgtatggttgatctctgcgcacccagtactgtgcttgatcctt |
82 |
Q |
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|
|||||||||||||||| |||||||||||||||| ||| |||||||||| |||||| ||||| ||||| |||||||||| |
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| T |
2899881 |
attgaaatgcctcagcaaattgagtaacagttaaaaacctgtatggtttttctctgtcaacccaatactgctcttgatcctt |
2899962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 94
Target Start/End: Complemental strand, 2874806 - 2874718
Alignment:
| Q |
6 |
aatgcctcagcgaattgagtaacagttacaaatctgtatggttgatctctgcgcacccagtactgtgcttgatcctttctggaagttac |
94 |
Q |
| |
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|||||||| || ||||||||||| |||||||| || ||||||| ||||||| ||| ||| || || ||||||||||||| |||||||| |
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| T |
2874806 |
aatgcctctgcaaattgagtaactgttacaaacctatatggttcatctctgtgcatccaatattgctcttgatcctttcttgaagttac |
2874718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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