View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11820_low_3 (Length: 416)
Name: NF11820_low_3
Description: NF11820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11820_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 7e-93; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 58 - 347
Target Start/End: Original strand, 40562645 - 40562919
Alignment:
| Q |
58 |
ttgaagaagagaaaggagggagaagaatgaaataagtctcaagttgagttattttgatattgatgggatccttgattattattatatctatctatctata |
157 |
Q |
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| T |
40562645 |
ttgaagaagagaaaggagggagaagaatgaaataagtctcaagttgagttattttgatattgatgggatccttga---ttattat-------------ta |
40562728 |
T |
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| Q |
158 |
taggttcgttctatggtgttgatattcaactaat--------gtctcttttgcttgacattttttaatgtgtttatttagatattttcttataaaggaaa |
249 |
Q |
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| T |
40562729 |
ta-------tctatggtgttgatattcaactaatagaaatttgtctgttttgcttgacattttttaatgtgtttatttagatattttcttataaaggaaa |
40562821 |
T |
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| Q |
250 |
tcaaataaaaatgagactaaattatagatgagagagaacgggaaagcgattggtggacatgtctataataatagagtgctgtatgaaataagttacaa |
347 |
Q |
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| T |
40562822 |
tcaaataaaaattagactaaattatagatgagagagaacgggaaagcgattggtggacatgtctataataatagagtgctgtatgaaataaattacaa |
40562919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 342 - 402
Target Start/End: Original strand, 40562953 - 40563013
Alignment:
| Q |
342 |
ttacaatttttatggttgtgttcattcttccgtcaaaatgttcgttccatgatgttgatgt |
402 |
Q |
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| T |
40562953 |
ttacaatttttatggttgtgttcattcttccgtcaaaatgttcgttccatgatgttgatgt |
40563013 |
T |
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