View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11820_low_4 (Length: 412)

Name: NF11820_low_4
Description: NF11820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11820_low_4
NF11820_low_4
[»] chr1 (8 HSPs)
chr1 (18-399)||(12774824-12775215)
chr1 (160-399)||(12804511-12804750)
chr1 (159-392)||(50788818-50789051)
chr1 (159-374)||(4160289-4160504)
chr1 (152-399)||(42287004-42287251)
chr1 (160-384)||(36989242-36989466)
chr1 (160-374)||(31644058-31644272)
chr1 (160-359)||(28496106-28496305)
[»] chr8 (2 HSPs)
chr8 (159-374)||(5788722-5788937)
chr8 (178-384)||(33186637-33186843)
[»] chr2 (3 HSPs)
chr2 (160-297)||(40040778-40040915)
chr2 (160-383)||(42898201-42898424)
chr2 (159-362)||(38895856-38896059)
[»] chr4 (2 HSPs)
chr4 (160-317)||(22085506-22085663)
chr4 (158-383)||(30518146-30518371)
[»] chr7 (2 HSPs)
chr7 (158-326)||(40749350-40749518)
chr7 (178-290)||(44150818-44150930)
[»] chr3 (1 HSPs)
chr3 (175-344)||(52248370-52248539)


Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 18 - 399
Target Start/End: Complemental strand, 12775215 - 12774824
Alignment:
Q  18 atatataaatgtttgcagcgttattgcgaccacaatttaaaccatgctatcaaatatatatata----------agattgcattaacaaaaatcgatagc 107  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||    
T  12775215 atatataaatgtttgtagcgtcattgcgaccacaatttaaaccatgctatcaaatatatatatatatatatataagattgcattaacaaaaatcgatagc 12775116  T
Q  108 gaaaaaactcgcagtagaaaaattggaactgatttattaggtatatgtttattacctggagaagagagtgccacagtcacatctatactccttagtacca 207  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12775115 gaaaaaactcgcaatagaaaaattggaactgatttattaggtatatgtttattacctggagaagagagtgccacagtcacatctatactccttagtacca 12775016  T
Q  208 caagtcttagaatgagctttccaatcagattgaacagcatatttcttagaacacttttcacacttccattttttctcaccatgctttctaaaatagtgtt 307  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12775015 caagttttagaatgagctttccaatcagattgaacagcatacttcttagaacacttttcacacttccattttttctcaccatgctttctaaaatagtgtt 12774916  T
Q  308 tcttaattccagtgaggtcgccaagagcccttgaagggtcatggtgaacacatgttggttctggacacaaataaacctttctctttggctct 399  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12774915 tcttaattccagtgaggtcaccaagagcccttgaagggtcatggtgaacacatgttggttctggacacaaataaacctttctctttggctct 12774824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 160 - 399
Target Start/End: Original strand, 12804511 - 12804750
Alignment:
Q  160 tacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaac 259  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12804511 taccttgagaagagagtgccacagtcacatctatactccctagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaac 12804610  T
Q  260 acttttcacacttccattttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcgccaagagcccttgaagggtcatggtgaacaca 359  Q
    |||||||||| ||||| ||||||||||||||||||||| || |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  12804611 acttttcacatttccactttttctcaccatgctttctagaaaagtgcttcttaattccagtgaggtcaccaagagcccttgaagggtcatggtgaacaca 12804710  T
Q  360 tgttggttctggacacaaataaacctttctctttggctct 399  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  12804711 tgttggttctggacacaaataaacctttctctttggctct 12804750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 159 - 392
Target Start/End: Original strand, 50788818 - 50789051
Alignment:
Q  159 ttacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaa 258  Q
    |||||||||||||||||||||||||||||| ||||| ||  | || ||||||||||||||||| || ||||||||||||||||||||||| ||||||||     
T  50788818 ttacctggagaagagagtgccacagtcacacctatattctctggtgccacaagtcttagaatgtgccttccaatcagattgaacagcatacttcttagag 50788917  T
Q  259 cacttttcacacttccattttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcgccaagagcccttgaagggtcatggtgaacac 358  Q
    ||||| |||||||||||||| ||||||||||| || | | | |||||||||||||| ||||||||||| ||||| ||||||||||||||||| ||||| |    
T  50788918 cacttatcacacttccatttcttctcaccatgtttgcgagagtagtgtttcttaatcccagtgaggtcaccaagtgcccttgaagggtcatgatgaacgc 50789017  T
Q  359 atgttggttctggacacaaataaacctttctctt 392  Q
    |||| || || ||||||| |||||||||||||||    
T  50789018 atgtgggctcaggacacagataaacctttctctt 50789051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 159 - 374
Target Start/End: Complemental strand, 4160504 - 4160289
Alignment:
Q  159 ttacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaa 258  Q
    |||||| |||||||| || |||||||||||  ||||||| ||||| |||||| | || ||||||||||||||||| || ||||| ||||||   ||||||    
T  4160504 ttaccttgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaa 4160405  T
Q  259 cacttttcacacttccattttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcgccaagagcccttgaagggtcatggtgaacac 358  Q
    || || ||||||||||| || |||||||| ||||| || ||| |||| ||||| |||||||| ||||| ||||| |||||||||||||||||||||||||    
T  4160404 catttctcacacttccacttcttctcaccgtgcttcctgaaaaagtgcttcttgattccagttaggtcaccaagtgcccttgaagggtcatggtgaacac 4160305  T
Q  359 atgttggttctggaca 374  Q
    ||||||| ||||||||    
T  4160304 atgttggctctggaca 4160289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 152 - 399
Target Start/End: Complemental strand, 42287251 - 42287004
Alignment:
Q  152 atgtttattacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatattt 251  Q
    |||||| |||||| |||||||| |||||||| ||||||||||| ||  |||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  42287251 atgtttgttacctagagaagagggtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccagtcagattgaacagcatattt 42287152  T
Q  252 cttagaacacttttcacacttccattttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcgccaagagcccttgaagggtcatgg 351  Q
    ||| || || |||||||| ||||| || |||||||| ||||| | | |  | || || ||||||||||| || || || | ||| ||||||||||| ||     
T  42287151 ctttgagcatttttcacatttccacttcttctcaccgtgcttacgagagaaatgctttttaattccagttagatctcctaaagctcttgaagggtcgtga 42287052  T
Q  352 tgaacacatgttggttctggacacaaataaacctttctctttggctct 399  Q
    || || ||||| || || ||||||||||||||||||||| ||||||||    
T  42287051 tggacgcatgtgggctcaggacacaaataaacctttctccttggctct 42287004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 160 - 384
Target Start/End: Complemental strand, 36989466 - 36989242
Alignment:
Q  160 tacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaac 259  Q
    |||||||| ||||  || |||||||||||| | || ||| | ||||||||  | || |||||||||||||||||||||||||||||||||||||||||||    
T  36989466 tacctggaaaagatggttccacagtcacatttgtattcccttgtaccacatattttggaatgagctttccaatcagattgaacagcatatttcttagaac 36989367  T
Q  260 acttttcacacttccattttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcgccaagagcccttgaagggtcatggtgaacaca 359  Q
    |||| ||||| ||||| ||||||||||||||||||||| || |||| || ||||||||||| || || ||||| || |||| ||||| |||||| |||||    
T  36989366 acttatcacatttccactttttctcaccatgctttctacaaaagtgctttttaattccagtaagatcaccaagtgctcttgcagggttatggtgtacaca 36989267  T
Q  360 tgttggttctggacacaaataaacc 384  Q
    ||  ||||| ||||| | |||||||    
T  36989266 tgaaggttcaggacaaacataaacc 36989242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 160 - 374
Target Start/End: Original strand, 31644058 - 31644272
Alignment:
Q  160 tacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaac 259  Q
    |||||||| || || || ||||| |||||| |||| ||   ||||||||| || ||||| ||||||||||||||||| |||||||||||  |||| || |    
T  31644058 tacctggaaaaaagggtaccacaatcacatttatattctcgagtaccacaggttttagagtgagctttccaatcagaatgaacagcatagatctttgagc 31644157  T
Q  260 acttttcacacttccattttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcgccaagagcccttgaagggtcatggtgaacaca 359  Q
    |||| ||||| |||||||||||||||||||| ||||||  ||| |||||||||||||| || || || ||||||||||||||||||| ||| ||||||||    
T  31644158 acttatcacatttccattttttctcaccatgttttctactataatgtttcttaattcctgtaagatctccaagagcccttgaagggttatgatgaacaca 31644257  T
Q  360 tgttggttctggaca 374  Q
    ||  || ||||||||    
T  31644258 tgaaggctctggaca 31644272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 160 - 359
Target Start/End: Original strand, 28496106 - 28496305
Alignment:
Q  160 tacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaac 259  Q
    ||||| |||||||| ||||||||||||||| | || ||  | |||||||| || || | ||||||||||||||||||||| || |||||||| || ||||    
T  28496106 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 28496205  T
Q  260 acttttcacacttccattttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcgccaagagcccttgaagggtcatggtgaacaca 359  Q
    | |||||||| ||||| || |||||||| |||||||||  | |||| || || || || |||||||| ||||| || ||||||||||||||||| |||||    
T  28496206 atttttcacatttccacttcttctcaccgtgctttctactaaagtgcttttttatacctgtgaggtcaccaagtgctcttgaagggtcatggtggacaca 28496305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 6e-47; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 159 - 374
Target Start/End: Original strand, 5788722 - 5788937
Alignment:
Q  159 ttacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaa 258  Q
    |||||| |||||||| || ||||||||||||||||| ||  |||| |||||||| || |||||||||||||||||||||||||||||||||||||| |||    
T  5788722 ttaccttgagaagagggttccacagtcacatctatattctctagtgccacaagttttggaatgagctttccaatcagattgaacagcatatttctttgaa 5788821  T
Q  259 cacttttcacacttccattttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcgccaagagcccttgaagggtcatggtgaacac 358  Q
    ||||||||||| ||||| || |||||||||||||||||  || |||||||||| |||||||| |  || || |  || ||||| || ||||| || ||||    
T  5788822 cacttttcacatttccacttcttctcaccatgctttctggaaaagtgtttcttgattccagtcaaatcccctaatgctcttgatggatcatgatgcacac 5788921  T
Q  359 atgttggttctggaca 374  Q
    | ||||||||||||||    
T  5788922 aagttggttctggaca 5788937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 178 - 384
Target Start/End: Complemental strand, 33186843 - 33186637
Alignment:
Q  178 ccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaacacttttcacacttccatt 277  Q
    ||||| |||||| |||||||  ||| |||||||   ||||| ||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| |    
T  33186843 ccacaatcacatttatactctctagaaccacaaactttagagtgagctttccaatcagattgaacagcatatttcttagaacatttctcacatttccact 33186744  T
Q  278 ttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcgccaagagcccttgaagggtcatggtgaacacatgttggttctggacacaa 377  Q
    ||||||||||||| |||||| || |||| || || || ||||| |  || || | ||| || ||||| ||||| |||||||| || ||||| ||||| |     
T  33186743 ttttctcaccatgttttctacaaaagtgcttttttatcccagttaaatcacctaaagctctagaaggatcatgatgaacacaagtaggttcaggacaaac 33186644  T
Q  378 ataaacc 384  Q
    |||||||    
T  33186643 ataaacc 33186637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 160 - 297
Target Start/End: Complemental strand, 40040915 - 40040778
Alignment:
Q  160 tacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaac 259  Q
    ||||||||||| || |||||||| |||||||| ||||| ||||| |||||| |||||  |||||| ||||||||||||||||| ||||||||||||||||    
T  40040915 tacctggagaatagtgtgccacaatcacatctgtactctttagtgccacaaatcttactatgagccttccaatcagattgaactgcatatttcttagaac 40040816  T
Q  260 acttttcacacttccattttttctcaccatgctttcta 297  Q
    |||| ||||||||||| || |||||||| |||||||||    
T  40040815 acttatcacacttccacttcttctcaccgtgctttcta 40040778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 160 - 383
Target Start/End: Complemental strand, 42898424 - 42898201
Alignment:
Q  160 tacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaac 259  Q
    ||||| |||||||| || |||||||||||||| || ||  | || ||||| || || || ||||||||||| || |||||||| ||||| |||||||| |    
T  42898424 taccttgagaagagggttccacagtcacatctgtattctcttgtgccacaggttttggagtgagctttccagtctgattgaactgcatacttcttagagc 42898325  T
Q  260 acttttcacacttccattttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcgccaagagcccttgaagggtcatggtgaacaca 359  Q
    |||| ||||| ||||| || |||||||| ||||||||  |  |||| ||||| || ||||| ||||| || |  || ||||| ||||||||||| |||||    
T  42898324 acttgtcacatttccacttcttctcaccgtgctttctgcagaagtgcttcttgataccagttaggtcccccaaggctcttgatgggtcatggtgcacaca 42898225  T
Q  360 tgttggttctggacacaaataaac 383  Q
     |||||||||||||||| ||||||    
T  42898224 agttggttctggacacacataaac 42898201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 159 - 362
Target Start/End: Original strand, 38895856 - 38896059
Alignment:
Q  159 ttacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaa 258  Q
    |||||| || |||| ||||||||| |||||| | || ||  |||||||||||||||| || || ||||||||||| ||||||||||||||    || ||     
T  38895856 ttaccttgaaaagatagtgccacaatcacatttgtattctctagtaccacaagtctttgagtgtgctttccaatccgattgaacagcataaaattttgag 38895955  T
Q  259 cacttttcacacttccattttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcgccaagagcccttgaagggtcatggtgaacac 358  Q
    ||||| ||||||||||| || |||||||| || || ||| || |||| ||||| || ||||| |  || || | |||||||||||| | ||  |||||||    
T  38895956 cacttctcacacttccacttcttctcaccgtgtttcctacaaaagtgcttctttatcccagttaaatctcccaaagcccttgaaggatgattatgaacac 38896055  T
Q  359 atgt 362  Q
    ||||    
T  38896056 atgt 38896059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 160 - 317
Target Start/End: Original strand, 22085506 - 22085663
Alignment:
Q  160 tacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaac 259  Q
    ||||||||||| |  |||||||| |||||| | |||||  |||| |||||| ||||   |||||||||||||||||||||||| ||||||||||| ||||    
T  22085506 tacctggagaaaattgtgccacaatcacatttgtactctctagttccacaaatcttgctatgagctttccaatcagattgaactgcatatttcttggaac 22085605  T
Q  260 acttttcacacttccattttttctcaccatgctttctaaaatagtgtttcttaattcc 317  Q
    |||||||||||||||| || ||||||||||| ||||||  ||| |||||||| |||||    
T  22085606 acttttcacacttccacttcttctcaccatgttttctactataatgtttctttattcc 22085663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 158 - 383
Target Start/End: Original strand, 30518146 - 30518371
Alignment:
Q  158 attacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttaga 257  Q
    ||||||| || |||| ||| |||||||||||| | || ||  |||||||||| || || || |||||||||||||| || |||||||||||    || ||    
T  30518146 attaccttgaaaagatagttccacagtcacatttgtattctctagtaccacatgtttttgagtgagctttccaatctgactgaacagcataacgttttga 30518245  T
Q  258 acacttttcacacttccattttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcgccaagagcccttgaagggtcatggtgaaca 357  Q
     ||||| ||||||||||| || || ||||||||||||||| || |||| || || || ||||| | ||| ||||| ||||||||||| |||||||| |||    
T  30518246 gcacttctcacacttccacttcttttcaccatgctttctacaaaagtgcttttttatcccagttaagtcaccaagtgcccttgaaggatcatggtggaca 30518345  T
Q  358 catgttggttctggacacaaataaac 383  Q
    || |||   |||||||||| ||||||    
T  30518346 caagttttctctggacacacataaac 30518371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 158 - 326
Target Start/End: Complemental strand, 40749518 - 40749350
Alignment:
Q  158 attacctggagaagagagtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttaga 257  Q
    ||||||| |||||||| || ||||| |||||  |||| ||  ||||||||||||| ||||  |||||||||||||||||||| || ||||||||||| ||    
T  40749518 attaccttgagaagagtgtaccacaatcacacttatattctctagtaccacaagttttagtgtgagctttccaatcagattggactgcatatttcttgga 40749419  T
Q  258 acacttttcacacttccattttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtc 326  Q
    |||||| |||||||||||||| ||||| ||||| ||||||  | | |||||||| ||||| ||||||||    
T  40749418 acacttatcacacttccatttcttctcgccatgttttctactaaaatgtttctttattccggtgaggtc 40749350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 178 - 290
Target Start/End: Original strand, 44150818 - 44150930
Alignment:
Q  178 ccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaacacttttcacacttccatt 277  Q
    ||||| |||||| | || ||| ||||||||||||| ||    ||||| |||||||| ||||||||||||||| | ||||| ||||| ||||| |||||||    
T  44150818 ccacaatcacatttgtattccctagtaccacaagttttctggtgagccttccaatctgattgaacagcatatcttttagagcacttgtcacatttccatt 44150917  T
Q  278 ttttctcaccatg 290  Q
    | |||||||||||    
T  44150918 tcttctcaccatg 44150930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 175 - 344
Target Start/End: Original strand, 52248370 - 52248539
Alignment:
Q  175 gtgccacagtcacatctatactccttagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaacacttttcacacttcc 274  Q
    |||||||| |||||| |||||||  |||| |||||  ||||   |||| ||||| ||||| |||   |||| ||||| ||||||||   |||||| ||||    
T  52248370 gtgccacaatcacatttatactctctagttccacagctcttcatatgaactttcaaatcacatttcgcagcgtattttttagaacaacgttcacatttcc 52248469  T
Q  275 attttttctcaccatgctttctaaaatagtgtttcttaattccagtgaggtcgccaagagcccttgaagg 344  Q
    |||| |||||||||||||||||| || |||| || || | ||| |||||||| || || || ||||||||    
T  52248470 atttcttctcaccatgctttctacaaaagtgctttttcactcctgtgaggtcaccgagtgctcttgaagg 52248539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University