View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11820_low_6 (Length: 270)
Name: NF11820_low_6
Description: NF11820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11820_low_6 |
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| [»] chr7 (12 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-141; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 18 - 270
Target Start/End: Original strand, 4863735 - 4863987
Alignment:
| Q |
18 |
acatcacggtattttgtaaacatggtctttggtaattgttgtaacttgagcgaaaggttaactctttcaatttgagagcttccttcttcagagtttatag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4863735 |
acatcacggtattttgtaaacatggtctttggtaattgttgtaacttgagcgaaaggttaactctttcaatttgagagcttccttcttcagagtttatag |
4863834 |
T |
|
| Q |
118 |
acacagtataatccttatgaacaggaaccatacgagaaccgctccaccgtatcacatcagcgttttcctcagccatactattaactatgaaaatctgaaa |
217 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4863835 |
acacagtataatccttatgaacaggaaccatacgagaaccgctccaccgtatcacatcagcgttttcctcagccatactattaactatgaaaatctgaaa |
4863934 |
T |
|
| Q |
218 |
ggctctatcacctttatttgttatattcggatcaaactcacaaaaatgtaacc |
270 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4863935 |
ggctctatcacctttatttgttatattcggatcaaactcacaaaaatgtaacc |
4863987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 69 - 270
Target Start/End: Original strand, 4643535 - 4643736
Alignment:
| Q |
69 |
gaaaggttaactctttcaatttgagagcttccttcttcagagtttatagacacagtataatccttatgaacaggaaccatacgagaaccgctccaccgta |
168 |
Q |
| |
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||||| ||| ||||||||| ||||||||||||||||| | ||| ||||||| | ||||||||||||||||||||||| ||||| ||| ||||||| || |
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| T |
4643535 |
gaaagattagctctttcaagttgagagcttccttcttgatagtccatagacattgcataatccttatgaacaggaaccaaacgagcaccactccacccta |
4643634 |
T |
|
| Q |
169 |
tcacatcagcgttttcctcagccatactattaactatgaaaatctgaaaggctctatcacctttatttgttatattcggatcaaactcacaaaaatgtaa |
268 |
Q |
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||||||| || ||||| ||| ||| | | ||| ||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4643635 |
tcacatccgccttttcttcaaccaaagtgttatctatgaatatctgaaagactctatcacctttatttgttatatccggatcaaactcacaaaaatgtaa |
4643734 |
T |
|
| Q |
269 |
cc |
270 |
Q |
| |
|
|| |
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|
| T |
4643735 |
cc |
4643736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 69 - 270
Target Start/End: Original strand, 4672540 - 4672741
Alignment:
| Q |
69 |
gaaaggttaactctttcaatttgagagcttccttcttcagagtttatagacacagtataatccttatgaacaggaaccatacgagaaccgctccaccgta |
168 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| ||||| |||| |||| ||||||||||||||||||||||||||||| ||| ||||| | || |
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| T |
4672540 |
gaaagattaactctttcaatttgagagcttccttcttgagagtacatagtgacagcataatccttatgaacaggaaccatacgagcaccactccaactta |
4672639 |
T |
|
| Q |
169 |
tcacatcagcgttttcctcagccatactattaactatgaaaatctgaaaggctctatcacctttatttgttatattcggatcaaactcacaaaaatgtaa |
268 |
Q |
| |
|
| |||||||| |||||||||||| | | ||| |||| |||||||||||||||||||||||| |||| | ||| | |||||||||||||||||||| |
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| T |
4672640 |
taacatcagctctttcctcagccagagtgttagctataaaaatctgaaaggctctatcacctgtattaatgataagcctgtcaaactcacaaaaatgtaa |
4672739 |
T |
|
| Q |
269 |
cc |
270 |
Q |
| |
|
|| |
|
|
| T |
4672740 |
cc |
4672741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 69 - 268
Target Start/End: Original strand, 4630791 - 4630990
Alignment:
| Q |
69 |
gaaaggttaactctttcaatttgagagcttccttcttcagagtttatagacacagtataatccttatgaacaggaaccatacgagaaccgctccaccgta |
168 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| ||||| ||| |||| ||||||||||||| |||||||||||||| ||| ||||||| || |
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|
| T |
4630791 |
gaaagattaactctttcaatttgagagcttccttcttgagagtacataagcacaacataatccttatgagtaggaaccatacgagcaccactccacctta |
4630890 |
T |
|
| Q |
169 |
tcacatcagcgttttcctcagccatactattaactatgaaaatctgaaaggctctatcacctttatttgttatattcggatcaaactcacaaaaatgtaa |
268 |
Q |
| |
|
|||||||||| ||||||||||| | | | ||| ||||||||||||||||| |||||||||||| || | |||| || |||||||||||||||||||| |
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| T |
4630891 |
tcacatcagctttttcctcagctagaatgttagctatgaaaatctgaaagactctatcaccttgatctcttatcgtcatttcaaactcacaaaaatgtaa |
4630990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 55 - 270
Target Start/End: Complemental strand, 4697435 - 4697220
Alignment:
| Q |
55 |
gttgtaacttgagcgaaaggttaactctttcaatttgagagcttccttcttcagagtttatagacacagtataatccttatgaacaggaaccatacgaga |
154 |
Q |
| |
|
|||||| ||||| ||||| |||| |||||||||||||||||||||||||| ||||| |||||||||| |||||| |||||||||||||||||| ||| |
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|
| T |
4697435 |
gttgtagcttgattgaaagattaagtctttcaatttgagagcttccttcttgagagtgcatagacacagcataatctttatgaacaggaaccataggagt |
4697336 |
T |
|
| Q |
155 |
accgctccaccgtatcacatcagcgttttcctcagccatactattaactatgaaaatctgaaaggctctatcacctttatttgttatattcggatcaaac |
254 |
Q |
| |
|
| ||||| ||||||||||||||| ||| |||| | ||||| ||||||| || |||||| ||||||||||| ||||| | |||| | |||||||| |
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| T |
4697335 |
agtactccaagaaatcacatcagcgtttatctccgccaaagtattagctatgaatatttgaaagactctatcacctatatttttgatatgctgatcaaac |
4697236 |
T |
|
| Q |
255 |
tcacaaaaatgtaacc |
270 |
Q |
| |
|
||||||||||| |||| |
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|
| T |
4697235 |
tcacaaaaatgcaacc |
4697220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 125 - 270
Target Start/End: Original strand, 4636777 - 4636922
Alignment:
| Q |
125 |
ataatccttatgaacaggaaccatacgagaaccgctccaccgtatcacatcagcgttttcctcagccatactattaactatgaaaatctgaaaggctcta |
224 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||||| ||||||||| || ||||| ||| ||| | | ||| ||||||| ||||||||| ||||| |
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|
| T |
4636777 |
ataatccttatgaacaggaaccatacgagcaccactccaccctatcacatccgccttttcttcaaccaaagtgttatctatgaatatctgaaagactcta |
4636876 |
T |
|
| Q |
225 |
tcacctttatttgttatattcggatcaaactcacaaaaatgtaacc |
270 |
Q |
| |
|
|||||||||| | |||| | ||||||||||||||||||||||| |
|
|
| T |
4636877 |
tcacctttatagttgatatgccaatcaaactcacaaaaatgtaacc |
4636922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 45 - 270
Target Start/End: Complemental strand, 4784090 - 4783865
Alignment:
| Q |
45 |
tttggtaattgttgtaacttgagcgaaaggttaactctttcaatttgagagcttccttcttcagagtttatagacacagtataatccttatgaacaggaa |
144 |
Q |
| |
|
||||||||| |||||| ||||| |||||| |||||| ||||||||||||||||||| ||| ||| |||| ||| | |||||||||||||||||||| |
|
|
| T |
4784090 |
tttggtaatcgttgtagcttgatcgaaagattaactttttcaatttgagagcttccgccttgagaacccatagtcacggcataatccttatgaacaggaa |
4783991 |
T |
|
| Q |
145 |
ccatacgagaaccgctccaccgtatcacatcagcgttttcctcagccatactattaactatgaaaatctgaaaggctctatcacctttatttgttatatt |
244 |
Q |
| |
|
||| | ||| ||| ||||||| |||||||||||| | ||||||| ||||| | |||||||||||||||| ||||||||| | | | | |||| |
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|
| T |
4783990 |
ccaaaggagcaccactccaccttatcacatcagcagcatgttcagccaaactatcatctatgaaaatctgaaaaattctatcaccatcctgtttgatatg |
4783891 |
T |
|
| Q |
245 |
cggatcaaactcacaaaaatgtaacc |
270 |
Q |
| |
|
| ||||||||||||||||||||||| |
|
|
| T |
4783890 |
ccaatcaaactcacaaaaatgtaacc |
4783865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 125 - 270
Target Start/End: Original strand, 4662911 - 4663056
Alignment:
| Q |
125 |
ataatccttatgaacaggaaccatacgagaaccgctccaccgtatcacatcagcgttttcctcagccatactattaactatgaaaatctgaaaggctcta |
224 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||| ||||||||| || ||| ||| | | | ||| | |||| ||||||||||| |||| |
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|
| T |
4662911 |
ataatccttatgaacaggaaccatacgaccattactccaccttatcacatcggctaattcttcaactaaattatcatctataaaaatctgaaacattcta |
4663010 |
T |
|
| Q |
225 |
tcacctttatttgttatattcggatcaaactcacaaaaatgtaacc |
270 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
4663011 |
tcacctttatttatgatattcggatcaaactcacaaaaatgtaacc |
4663056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 75 - 153
Target Start/End: Original strand, 4653390 - 4653468
Alignment:
| Q |
75 |
ttaactctttcaatttgagagcttccttcttcagagtttatagacacagtataatccttatgaacaggaaccatacgag |
153 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |||| |||| |||||||||||||||||||| || ||||| |
|
|
| T |
4653390 |
ttaactctttcaatttgagtgcttccttcttcagagtgcatagtcacaacataatccttatgaacaggaatcaaacgag |
4653468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 45 - 270
Target Start/End: Complemental strand, 4816519 - 4816294
Alignment:
| Q |
45 |
tttggtaattgttgtaacttgagcgaaaggttaactctttcaatttgagagcttccttcttcagagtttatagacacagtataatccttatgaacaggaa |
144 |
Q |
| |
|
||||||||| | |||| ||||| |||||| |||||| ||||||||||||||||||| | | ||| |||| ||| | |||||||||||||||||||| |
|
|
| T |
4816519 |
tttggtaatcgatgtagcttgatcgaaagattaactttttcaatttgagagcttccgccatgagaacccatagtcacggcataatccttatgaacaggaa |
4816420 |
T |
|
| Q |
145 |
ccatacgagaaccgctccaccgtatcacatcagcgttttcctcagccatactattaactatgaaaatctgaaaggctctatcacctttatttgttatatt |
244 |
Q |
| |
|
| | | ||| ||| ||||||| |||||||||||| ||||||| ||||| | |||||||||||||||| ||||||||| | | | | |||| |
|
|
| T |
4816419 |
caaaaggagcaccactccaccatatcacatcagcaaaaagttcagccaaactatcatctatgaaaatctgaaaaattctatcaccatcctgtttgatatg |
4816320 |
T |
|
| Q |
245 |
cggatcaaactcacaaaaatgtaacc |
270 |
Q |
| |
|
| ||||||||||||||||||||||| |
|
|
| T |
4816319 |
ccaatcaaactcacaaaaatgtaacc |
4816294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 69 - 270
Target Start/End: Complemental strand, 4712306 - 4712105
Alignment:
| Q |
69 |
gaaaggttaactctttcaatttgagagcttccttcttcagagtttatagacacagtataatccttatgaacaggaaccatacgagaaccgctccaccgta |
168 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| | || ||||| || ||||| |||||||||||||||||||| ||| | ||| ||||| | |
|
|
| T |
4712306 |
gaaaggttaactctttcaatttcagagcttccattttgagagtacattttcacagcataatccttatgaacaggaatcatgttaccaccactccagtaaa |
4712207 |
T |
|
| Q |
169 |
tcacatcagcgttttcctcagccatactattaactatgaaaatctgaaaggctctatcacctttatttgttatattcggatcaaactcacaaaaatgtaa |
268 |
Q |
| |
|
|||||||||||| || ||||||| | ||| | || || |||||||| |||||||||||||||| | ||| | |||||||||||||||||||||| |
|
|
| T |
4712206 |
tcacatcagcgtattgttcagccaaaatatcattgataaatatctgaaaaactctatcacctttattcttgataagcagatcaaactcacaaaaatgtaa |
4712107 |
T |
|
| Q |
269 |
cc |
270 |
Q |
| |
|
|| |
|
|
| T |
4712106 |
cc |
4712105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 144
Target Start/End: Complemental strand, 4846268 - 4846171
Alignment:
| Q |
47 |
tggtaattgttgtaacttgagcgaaaggttaactctttcaatttgagagcttccttcttcagagtttatagacacagtataatccttatgaacaggaa |
144 |
Q |
| |
|
||||||| |||| | ||||| ||||| |||||||||||||||| ||||||||| | || ||||| || ||||| |||||||||||||||||||| |
|
|
| T |
4846268 |
tggtaatcgttgaagcttgattgaaagattaactctttcaatttcagagcttccattttgagagtagattttcacagcataatccttatgaacaggaa |
4846171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 69 - 265
Target Start/End: Complemental strand, 18925973 - 18925777
Alignment:
| Q |
69 |
gaaaggttaactctttcaatttgagagcttccttcttcagagtttatagacacagtataatccttatgaacaggaaccatacgagaaccgctccaccgta |
168 |
Q |
| |
|
||||| |||||||||| |||||| |||||||||||| ||||| |||| |||| ||||||||||||||||||||||||||||| ||| ||||| | | |
|
|
| T |
18925973 |
gaaagattaactcttttaatttgcgagcttccttctcgagagtacatagtcacaacataatccttatgaacaggaaccatacgagcaccactccaatgaa |
18925874 |
T |
|
| Q |
169 |
tcacatcagcgttttcctcagccatactattaactatgaaaatctgaaaggctctatcacctttatttgttatattcggatcaaactcacaaaaatg |
265 |
Q |
| |
|
|||||||||| ||| ||||||| | ||| | |||| ||||||||||| |||||||||||| ||| |||||| | ||||||||| |||||||| |
|
|
| T |
18925873 |
tcacatcagcatttcgttcagccaaattatcatctataaaaatctgaaaaactctatcaccttgattctttatatgccaatcaaactcgcaaaaatg |
18925777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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