View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11820_low_7 (Length: 262)

Name: NF11820_low_7
Description: NF11820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11820_low_7
NF11820_low_7
[»] chr1 (1 HSPs)
chr1 (17-260)||(5130796-5131039)
[»] chr5 (11 HSPs)
chr5 (26-98)||(8677803-8677872)
chr5 (26-81)||(8636865-8636920)
chr5 (26-97)||(8644210-8644278)
chr5 (19-74)||(8535492-8535547)
chr5 (32-79)||(8548146-8548193)
chr5 (19-86)||(9074768-9074835)
chr5 (19-81)||(8528937-8528999)
chr5 (20-82)||(8641357-8641419)
chr5 (37-86)||(1600331-1600380)
chr5 (180-217)||(8535690-8535727)
chr5 (185-217)||(1600180-1600212)
[»] chr7 (3 HSPs)
chr7 (30-81)||(48361902-48361953)
chr7 (185-217)||(35780022-35780054)
chr7 (185-217)||(48361732-48361764)
[»] chr4 (1 HSPs)
chr4 (19-81)||(9443098-9443160)
[»] chr6 (2 HSPs)
chr6 (32-78)||(16716363-16716409)
chr6 (181-217)||(16716536-16716572)
[»] scaffold0627 (2 HSPs)
scaffold0627 (32-78)||(4663-4709)
scaffold0627 (185-217)||(4841-4873)


Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 17 - 260
Target Start/End: Original strand, 5130796 - 5131039
Alignment:
Q  17 acaaaacagttgcaggaatgatatagcaatatggcagcaccctcttcaaagtgttttaccggccaaaaacataaaccataattgctgaaaagactgactg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5130796 acaaaacagttgcaggaatgatatagcaatatggcagcaccctcttcaaagtgttttaccggccaaaaacataaaccataattgctgaaaagactgactg 5130895  T
Q  117 aagtattaatgctgtaaaccttagtccatgattccgcaatgcaacattatggaaagaacatgcatcagaaatgtaaagcaatccctttaattctcccatg 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  5130896 aagtattaatgctgtaaaccttagtccatgattccgcaatgcaacattatggaaagaacacgcatcagaaatgtaaagaaatccctttaattctcccatg 5130995  T
Q  217 ccgatatgctcggtgccataaaaatgattatgattttcaaacac 260  Q
    ||||||||||||||||||||||||| ||||||||||||||||||    
T  5130996 ccgatatgctcggtgccataaaaatcattatgattttcaaacac 5131039  T

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Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 8677803 - 8677872
Alignment:
Q  26 ttgcaggaatgatatagcaatatggcagcaccctcttcaaagtgttttaccggccaaaaacataaaccataat 98  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||   |||||||||||||||    
T  8677803 ttgcaggaatgatataacaatatggcagcaccctcttcaaagtgttttaccggcc---aacataaaccataat 8677872  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 8636865 - 8636920
Alignment:
Q  26 ttgcaggaatgatatagcaatatggcagcaccctcttcaaagtgttttaccggcca 81  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  8636865 ttgcaggaatgatataacaatatggcagccccctcttcaaagtgttttaccggcca 8636920  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 26 - 97
Target Start/End: Original strand, 8644210 - 8644278
Alignment:
Q  26 ttgcaggaatgatatagcaatatggcagcaccctcttcaaagtgttttaccggccaaaaacataaaccataa 97  Q
    |||||||||||||||| |||||||||||| ||||||||||||| |||||||||||   ||||||||||||||    
T  8644210 ttgcaggaatgatataacaatatggcagccccctcttcaaagttttttaccggcc---aacataaaccataa 8644278  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 8535492 - 8535547
Alignment:
Q  19 aaaacagttgcaggaatgatatagcaatatggcagcaccctcttcaaagtgtttta 74  Q
    |||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  8535492 aaaacaattgcaggaatgatataacaatatggcagcaccttcttcaaagtgtttta 8535547  T

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Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 79
Target Start/End: Complemental strand, 8548193 - 8548146
Alignment:
Q  32 gaatgatatagcaatatggcagcaccctcttcaaagtgttttaccggc 79  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||    
T  8548193 gaatgatataacaatacggcagcaccctcttcaaagtgttttaccggc 8548146  T

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Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 9074835 - 9074768
Alignment:
Q  19 aaaacagttgcaggaatgatatagcaatatggcagcaccctcttcaaagtgttttaccggccaaaaac 86  Q
    |||||| ||| || ||||||||| ||||||||||||||| |||||||||||||||| |||||| ||||    
T  9074835 aaaacaattgtagcaatgatataacaatatggcagcaccttcttcaaagtgttttatcggccataaac 9074768  T

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Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 8528937 - 8528999
Alignment:
Q  19 aaaacagttgcaggaatgatatagcaatatggcagcaccctcttcaaagtgttttaccggcca 81  Q
    |||||| ||| |||||||||||  ||||||||||||||| |||||||||||||||| ||||||    
T  8528937 aaaacaattggaggaatgatatgacaatatggcagcaccttcttcaaagtgttttatcggcca 8528999  T

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Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 8641357 - 8641419
Alignment:
Q  20 aaacagttgcaggaatgatatagcaatatggcagcaccctcttcaaagtgttttaccggccaa 82  Q
    ||||| |||||||||||||||| | |||  |||||||| |||||||||||| |||||||||||    
T  8641357 aaacaattgcaggaatgatataaccataacgcagcaccatcttcaaagtgtattaccggccaa 8641419  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 86
Target Start/End: Complemental strand, 1600380 - 1600331
Alignment:
Q  37 atatagcaatatggcagcaccctcttcaaagtgttttaccggccaaaaac 86  Q
    ||||| ||||||||||||||| ||||||||||||| || |||||| ||||    
T  1600380 atataacaatatggcagcaccttcttcaaagtgttgtatcggccataaac 1600331  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 217
Target Start/End: Original strand, 8535690 - 8535727
Alignment:
Q  180 atcagaaatgtaaagcaatccctttaattctcccatgc 217  Q
    |||| |||||||||| ||||||||||||||||||||||    
T  8535690 atcacaaatgtaaagaaatccctttaattctcccatgc 8535727  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 217
Target Start/End: Complemental strand, 1600212 - 1600180
Alignment:
Q  185 aaatgtaaagcaatccctttaattctcccatgc 217  Q
    |||||||||| ||||||||||||||||||||||    
T  1600212 aaatgtaaagaaatccctttaattctcccatgc 1600180  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 48361953 - 48361902
Alignment:
Q  30 aggaatgatatagcaatatggcagcaccctcttcaaagtgttttaccggcca 81  Q
    |||||||||||| ||||||||||||||| |||||||||||||||| ||||||    
T  48361953 aggaatgatataacaatatggcagcaccttcttcaaagtgttttatcggcca 48361902  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 217
Target Start/End: Original strand, 35780022 - 35780054
Alignment:
Q  185 aaatgtaaagcaatccctttaattctcccatgc 217  Q
    |||||||||| ||||||||||||||||||||||    
T  35780022 aaatgtaaagaaatccctttaattctcccatgc 35780054  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 217
Target Start/End: Complemental strand, 48361764 - 48361732
Alignment:
Q  185 aaatgtaaagcaatccctttaattctcccatgc 217  Q
    |||||||||| ||||||||||||||||||||||    
T  48361764 aaatgtaaagaaatccctttaattctcccatgc 48361732  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 9443098 - 9443160
Alignment:
Q  19 aaaacagttgcaggaatgatatagcaatatggcagcaccctcttcaaagtgttttaccggcca 81  Q
    |||||| ||| |||||||||||  ||||||||||||||| |||||||||||||||| ||||||    
T  9443098 aaaacaattgaaggaatgatatgacaatatggcagcaccttcttcaaagtgttttatcggcca 9443160  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 16716363 - 16716409
Alignment:
Q  32 gaatgatatagcaatatggcagcaccctcttcaaagtgttttaccgg 78  Q
    |||||||||| ||||| | ||||||||||||||||||||||||||||    
T  16716363 gaatgatataacaatacgccagcaccctcttcaaagtgttttaccgg 16716409  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 16716536 - 16716572
Alignment:
Q  181 tcagaaatgtaaagcaatccctttaattctcccatgc 217  Q
    ||||||||||| || ||||||||||||||||||||||    
T  16716536 tcagaaatgtatagaaatccctttaattctcccatgc 16716572  T

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Target: scaffold0627 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 78
Target Start/End: Original strand, 4663 - 4709
Alignment:
Q  32 gaatgatatagcaatatggcagcaccctcttcaaagtgttttaccgg 78  Q
    ||||||| || |||||  |||||||||||||||||||||||||||||    
T  4663 gaatgatgtaacaatacagcagcaccctcttcaaagtgttttaccgg 4709  T

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Target: scaffold0627; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 217
Target Start/End: Original strand, 4841 - 4873
Alignment:
Q  185 aaatgtaaagcaatccctttaattctcccatgc 217  Q
    |||||||||| ||||||||||||||||||||||    
T  4841 aaatgtaaagaaatccctttaattctcccatgc 4873  T

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