View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11820_low_8 (Length: 240)

Name: NF11820_low_8
Description: NF11820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11820_low_8
NF11820_low_8
[»] chr8 (9 HSPs)
chr8 (18-240)||(2271374-2271596)
chr8 (139-239)||(41178187-41178287)
chr8 (134-238)||(45191957-45192061)
chr8 (150-222)||(7421411-7421483)
chr8 (170-238)||(2355181-2355249)
chr8 (139-220)||(26432248-26432329)
chr8 (170-222)||(38075323-38075375)
chr8 (139-227)||(9420001-9420089)
chr8 (162-222)||(32336715-32336775)
[»] scaffold0123 (1 HSPs)
scaffold0123 (146-239)||(27958-28051)
[»] chr3 (6 HSPs)
chr3 (139-227)||(54918219-54918307)
chr3 (172-239)||(28172662-28172729)
chr3 (178-239)||(26187264-26187324)
chr3 (136-228)||(28854467-28854560)
chr3 (139-240)||(46160793-46160893)
chr3 (166-222)||(26243842-26243898)
[»] chr5 (3 HSPs)
chr5 (139-239)||(39691144-39691244)
chr5 (134-239)||(10437346-10437451)
chr5 (139-204)||(11970354-11970419)
[»] chr2 (5 HSPs)
chr2 (139-235)||(44194908-44195004)
chr2 (173-239)||(6247825-6247891)
chr2 (139-239)||(15524342-15524446)
chr2 (162-239)||(4603222-4603298)
chr2 (170-228)||(18248843-18248901)
[»] chr7 (5 HSPs)
chr7 (139-219)||(44057547-44057627)
chr7 (149-239)||(39136026-39136121)
chr7 (190-239)||(35850421-35850470)
chr7 (135-239)||(32097119-32097223)
chr7 (139-200)||(4088542-4088603)
[»] chr4 (5 HSPs)
chr4 (139-222)||(1019037-1019120)
chr4 (139-224)||(11528342-11528427)
chr4 (139-222)||(11458281-11458364)
chr4 (170-228)||(39009546-39009604)
chr4 (172-238)||(32979845-32979911)
[»] chr1 (6 HSPs)
chr1 (139-239)||(6596603-6596703)
chr1 (170-239)||(27124043-27124112)
chr1 (170-238)||(18428373-18428440)
chr1 (147-239)||(23690270-23690362)
chr1 (168-222)||(28706838-28706892)
chr1 (147-215)||(8231503-8231571)
[»] scaffold0246 (1 HSPs)
scaffold0246 (139-235)||(15453-15550)
[»] chr6 (1 HSPs)
chr6 (139-227)||(26405203-26405291)


Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 2271596 - 2271374
Alignment:
Q  18 tgagctttagaattgcatctggattctttaattgttgcaaatatgctttagaatatgctttagaattgcatgtagatttgttgtgcaaaagatttggtgn 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||     
T  2271596 tgagctttagaattgcatctggattctttaattgttgcaaatatgctttagaatatgctttagaattgaatgtagatttgttgtgcaaaagattttgtgt 2271497  T
Q  118 nnnnnnactgctaatcttttaaaaatgagtgtcgtttaaaattcttatacataaattaataaatgtaataatgatgtcaaaaaatatgacaattttacta 217  Q
          || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2271496 ttttttaccgctaatcttttaaaaatgagtgtcgtttaaaattcttatacataaattaataaatgtaataatgatgtcaaaaaacatgacaattttacta 2271397  T
Q  218 aactagccttaattactattggc 240  Q
    |||||||||||||||||||||||    
T  2271396 aactagccttaattactattggc 2271374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 139 - 239
Target Start/End: Original strand, 41178187 - 41178287
Alignment:
Q  139 aaaatgagtgtcgtttaaaattcttatacataaattaataaatgtaataatgatgtcaaaaaatatgacaattttactaaactagccttaattactattg 238  Q
    |||||| |||||||||||  || ||| ||| ||||||| |||||||||||||||||||||| | ||||||||||||||||||||| | || |||||||||    
T  41178187 aaaatgggtgtcgtttaaggtttttacacacaaattaagaaatgtaataatgatgtcaaaagaaatgacaattttactaaactagtcatatttactattg 41178286  T
Q  239 g 239  Q
    |    
T  41178287 g 41178287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 134 - 238
Target Start/End: Original strand, 45191957 - 45192061
Alignment:
Q  134 ttttaaaaatgagtgtcgtttaaaattcttatacataaattaataaatgtaataatgatgtcaaaaaatatgacaattttactaaactagccttaattac 233  Q
    |||| ||||||||||| || ||| ||| ||||||| ||||||| |||| ||||||||||||||||| | ||||||||||||| ||||||  |||| ||||    
T  45191957 tttttaaaatgagtgttgtataagatttttatacacaaattaagaaatataataatgatgtcaaaagacatgacaattttacgaaactaatcttatttac 45192056  T
Q  234 tattg 238  Q
    |||||    
T  45192057 tattg 45192061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 150 - 222
Target Start/End: Original strand, 7421411 - 7421483
Alignment:
Q  150 cgtttaaaattcttatacataaattaataaatgtaataatgatgtcaaaaaatatgacaattttactaaacta 222  Q
    ||||||| ||| ||||| | ||||||| |||| |||||||||||| |||||||||||||||||||||||||||    
T  7421411 cgtttaagatttttatatacaaattaagaaatataataatgatgttaaaaaatatgacaattttactaaacta 7421483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 238
Target Start/End: Original strand, 2355181 - 2355249
Alignment:
Q  170 aaattaataaatgtaataatgatgtcaaaaaatatgacaattttactaaactagccttaattactattg 238  Q
    ||||||| |||| |||||||  |||||||| | |||||||||||||||||||||||||| |||||||||    
T  2355181 aaattaagaaatataataattgtgtcaaaagacatgacaattttactaaactagccttatttactattg 2355249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 220
Target Start/End: Complemental strand, 26432329 - 26432248
Alignment:
Q  139 aaaatgagtgtcgtttaaaattcttatacataaattaataaatgtaataatgatgtcaaaaaatatgacaattttactaaac 220  Q
    ||||||| ||| |||||| ||| |||| |||||||||| ||||||||||||||||| |||| | |||||||| |||| ||||    
T  26432329 aaaatgaatgttgtttaagatttttatccataaattaagaaatgtaataatgatgttaaaagacatgacaatgttacaaaac 26432248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 38075323 - 38075375
Alignment:
Q  170 aaattaataaatgtaataatgatgtcaaaaaatatgacaattttactaaacta 222  Q
    ||||||| |||||||| ||||||||||||| | |||| |||||||||||||||    
T  38075323 aaattaaaaaatgtaaaaatgatgtcaaaatacatgataattttactaaacta 38075375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 227
Target Start/End: Original strand, 9420001 - 9420089
Alignment:
Q  139 aaaatgagtgtcgtttaaaattcttatacataaattaataaatgtaataatgatgtcaaaaaatatgacaattttactaaactagcctt 227  Q
    ||||||||||||||||||| || ||  ||| | ||||| ||||| |||| || |||| | ||| |||||| |||||||||| |||||||    
T  9420001 aaaatgagtgtcgtttaaagttgttccacacatattaagaaatgcaatagtgttgtctataaacatgacacttttactaaaatagcctt 9420089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 32336715 - 32336775
Alignment:
Q  162 ttatacataaattaataaatgtaataatgatgtcaaaaaatatgacaattttactaaacta 222  Q
    ||||||| | ||||| ||||||||| ||| ||| |||| | ||||||||||||||||||||    
T  32336715 ttatacacatattaagaaatgtaatgatggtgttaaaagaaatgacaattttactaaacta 32336775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 146 - 239
Target Start/End: Original strand, 27958 - 28051
Alignment:
Q  146 gtgtcgtttaaaattcttatacataaattaataaatgtaataatgatgtcaaaaaatatgacaattttactaaactagccttaattactattgg 239  Q
    ||||||||||| ||| ||||||||||||||| ||||||||||||||||| |||| | |||| ||||||||||||||| ||||| ||||||||||    
T  27958 gtgtcgtttaagatttttatacataaattaagaaatgtaataatgatgttaaaagacatgataattttactaaactaaccttatttactattgg 28051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 139 - 227
Target Start/End: Complemental strand, 54918307 - 54918219
Alignment:
Q  139 aaaatgagtgtcgtttaaaattcttatacataaattaataaatgtaataatgatgtcaaaaaatatgacaattttactaaactagcctt 227  Q
    ||||||||| ||||||||  || ||| ||||||||||| |||| ||||||||||||||||| | |||||||||||||||||||||||||    
T  54918307 aaaatgagtatcgtttaaggtttttacacataaattaagaaatttaataatgatgtcaaaagacatgacaattttactaaactagcctt 54918219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 172 - 239
Target Start/End: Original strand, 28172662 - 28172729
Alignment:
Q  172 attaataaatgtaataatgatgtcaaaaaatatgacaattttactaaactagccttaattactattgg 239  Q
    ||||| ||||||||||||||| |||||  ||||||||||||||||||||||| |||||||||| ||||    
T  28172662 attaaaaaatgtaataatgatctcaaatgatatgacaattttactaaactagtcttaattactgttgg 28172729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 26187264 - 26187324
Alignment:
Q  178 aaatgtaataatgatgtcaaaaaatatgacaattttactaaactagccttaattactattgg 239  Q
    |||||||||||||||||| ||||| ||||||||| ||||||||||  |||| ||||||||||    
T  26187264 aaatgtaataatgatgtc-aaaaacatgacaattatactaaactaatcttatttactattgg 26187324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 228
Target Start/End: Complemental strand, 28854560 - 28854467
Alignment:
Q  136 ttaaaaatgagtgtcgtttaaaattcttatacataaattaataaa-tgtaataatgatgtcaaaaaatatgacaattttactaaactagcctta 228  Q
    |||||||||||||||||||||  || ||| ||| | ||||| ||| ||||||||||  |||||||   | |||||||||||||||||| |||||    
T  28854560 ttaaaaatgagtgtcgtttaaggttgttacacaaatattaaaaaattgtaataatggcgtcaaaaggcaagacaattttactaaactaacctta 28854467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 240
Target Start/End: Complemental strand, 46160893 - 46160793
Alignment:
Q  139 aaaatgagtgtcgtttaaaattcttatacataaattaataaatgtaataatgatgtcaaaaaatatgacaattttactaaactagccttaattactattg 238  Q
    ||||||| |||| |||||  || ||| ||| ||||||| ||||||||| ||| ||  |||||| |||| ||||||||||||||| |||||  ||||||||    
T  46160893 aaaatgaatgtcctttaaggtttttacacacaaattaagaaatgtaatgatggtga-aaaaaacatgaaaattttactaaactaaccttatctactattg 46160795  T
Q  239 gc 240  Q
    ||    
T  46160794 gc 46160793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 26243842 - 26243898
Alignment:
Q  166 acataaattaataaatgtaataatgatgtcaaaaaatatgacaattttactaaacta 222  Q
    ||||| ||||| |||||||| ||| |||| |||||| |||||||||||| |||||||    
T  26243842 acatacattaagaaatgtaacaatcatgttaaaaaacatgacaattttattaaacta 26243898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 139 - 239
Target Start/End: Complemental strand, 39691244 - 39691144
Alignment:
Q  139 aaaatgagtgtcgtttaaaattcttatacataaattaataaatgtaataatgatgtcaaaaaatatgacaattttactaaactagccttaattactattg 238  Q
    |||||||| || ||||||| || ||||||||||||||| ||||||||||||||| |||||| | | | |||||||| |||||||| |||| |||||||||    
T  39691244 aaaatgagcgttgtttaaagtttttatacataaattaagaaatgtaataatgatatcaaaagacacggcaattttattaaactagtcttatttactattg 39691145  T
Q  239 g 239  Q
    |    
T  39691144 g 39691144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 134 - 239
Target Start/End: Original strand, 10437346 - 10437451
Alignment:
Q  134 ttttaaaaatgagtgtcgtttaaaattcttatacataaattaataaatgtaataatgatgtcaaaaaatatgacaattttactaaactagccttaattac 233  Q
    |||| |||||||||||| ||||||  | ||||| | ||||||| |||||||||||||||||||||| | |||||| |||||||| |||| | ||| ||||    
T  10437346 tttttaaaatgagtgtcttttaaaggttttatatacaaattaagaaatgtaataatgatgtcaaaagacatgacagttttactacactaacattatttac 10437445  T
Q  234 tattgg 239  Q
    ||||||    
T  10437446 tattgg 10437451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 204
Target Start/End: Complemental strand, 11970419 - 11970354
Alignment:
Q  139 aaaatgagtgtcgtttaaaattcttatacataaattaataaatgtaataatgatgtcaaaaaatat 204  Q
    |||||||||||| ||||| ||| ||| ||| ||||||| |||||||||||||||||||||| ||||    
T  11970419 aaaatgagtgtcatttaagatttttacacacaaattaagaaatgtaataatgatgtcaaaagatat 11970354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 139 - 235
Target Start/End: Original strand, 44194908 - 44195004
Alignment:
Q  139 aaaatgagtgtcgtttaaaattcttatacataaattaataaatgtaataatgatgtcaaaaaatatgacaattttactaaactagccttaattacta 235  Q
    ||||| || |||||| || ||| ||| ||| ||||||| |||||||||||||||||||||  |||||||||||||||||||||| ||||| ||||||    
T  44194908 aaaataagcgtcgttcaagatttttacacacaaattaagaaatgtaataatgatgtcaaatgatatgacaattttactaaactaaccttatttacta 44195004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 173 - 239
Target Start/End: Complemental strand, 6247891 - 6247825
Alignment:
Q  173 ttaataaatgtaataatgatgtcaaaaaatatgacaattttactaaactagccttaattactattgg 239  Q
    |||| ||||| ||||||||||||||||   |||||||||||||||||||||||||| ||||||||||    
T  6247891 ttaagaaatgaaataatgatgtcaaaagtcatgacaattttactaaactagccttatttactattgg 6247825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 139 - 239
Target Start/End: Complemental strand, 15524446 - 15524342
Alignment:
Q  139 aaaatgagtgtcgtttaaaattcttatacataaattaataaa-tgtaataatga---tgtcaaaaaatatgacaattttactaaactagccttaattact 234  Q
    ||||||| ||| |||||||||| ||| ||| ||||||| ||| | ||||||| |   |||||||| | ||||||||||||||||| |||||||| |||||    
T  15524446 aaaatgaatgttgtttaaaatttttacacacaaattaaaaaactataataataaaaatgtcaaaagacatgacaattttactaaattagccttatttact 15524347  T
Q  235 attgg 239  Q
    |||||    
T  15524346 attgg 15524342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 239
Target Start/End: Original strand, 4603222 - 4603298
Alignment:
Q  162 ttatacataaattaataaatgtaataatgatgtcaaaaaatatgacaattttactaaactagccttaattactattgg 239  Q
    ||||||| ||||||| |||||||||||| ||||||||| | || ||||||||||||||||| | ||| |||| |||||    
T  4603222 ttatacacaaattaagaaatgtaataataatgtcaaaagacat-acaattttactaaactaactttatttacaattgg 4603298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 18248901 - 18248843
Alignment:
Q  170 aaattaataaatgtaataatgatgtcaaaaaatatgacaattttactaaactagcctta 228  Q
    ||||||| |||||| || ||||||| |||| | |||||||||||||||||||| |||||    
T  18248901 aaattaaaaaatgtgatgatgatgttaaaagacatgacaattttactaaactaacctta 18248843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 139 - 219
Target Start/End: Original strand, 44057547 - 44057627
Alignment:
Q  139 aaaatgagtgtcgtttaaaattcttatacataaattaataaatgtaataatgatgtcaaaaaatatgacaattttactaaa 219  Q
    ||||||||||| |||||| ||| ||| ||| ||||||| |||||||||||||||||||||  | |||||||||||||||||    
T  44057547 aaaatgagtgttgtttaagatttttacacacaaattaagaaatgtaataatgatgtcaaatgacatgacaattttactaaa 44057627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 149 - 239
Target Start/End: Original strand, 39136026 - 39136121
Alignment:
Q  149 tcgtttaaaattcttatacataaattaataaatgtaataatgatgtcaaaaaata-----tgacaattttactaaactagccttaattactattgg 239  Q
    |||||||| ||| ||| ||||||||||| |||||||||||| ||||||||||| |     |||||||||||||||| |||||||| |||| |||||    
T  39136026 tcgtttaagatttttacacataaattaagaaatgtaataataatgtcaaaaaaaaaaacatgacaattttactaaattagccttatttaccattgg 39136121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 35850421 - 35850470
Alignment:
Q  190 gatgtcaaaaaatatgacaattttactaaactagccttaattactattgg 239  Q
    |||||||||| | |||| ||||||||||||||||||||| ||||||||||    
T  35850421 gatgtcaaaagacatgagaattttactaaactagccttatttactattgg 35850470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 239
Target Start/End: Original strand, 32097119 - 32097223
Alignment:
Q  135 tttaaaaatgagtgtcgtttaaaattcttatacataaattaataaatgtaataatgatgtcaaaaaatatgacaattttactaaactagccttaattact 234  Q
    |||||||||||   |||||||||  | ||| ||| ||||||| |||| ||||||| |||| |||  |||||||||||||||||||||| | ||| ||| |    
T  32097119 tttaaaaatgatcatcgtttaaagcttttaaacacaaattaagaaatctaataataatgttaaatgatatgacaattttactaaactaactttatttatt 32097218  T
Q  235 attgg 239  Q
    |||||    
T  32097219 attgg 32097223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 200
Target Start/End: Original strand, 4088542 - 4088603
Alignment:
Q  139 aaaatgagtgtcgtttaaaattcttatacataaattaataaatgtaataatgatgtcaaaaa 200  Q
    ||||||||| |  |||||| || ||| ||| ||||||| |||||||||||||||||||||||    
T  4088542 aaaatgagttttatttaaagtttttacacacaaattaagaaatgtaataatgatgtcaaaaa 4088603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 139 - 222
Target Start/End: Original strand, 1019037 - 1019120
Alignment:
Q  139 aaaatgagtgtcgtttaaaattcttatacataaattaataaatgtaataatgatgtcaaaaaatatgacaattttactaaacta 222  Q
    ||||||||||||||||||  || ||| ||| ||||| | ||||||||||||| |||||||| | ||||||||||||||||||||    
T  1019037 aaaatgagtgtcgtttaaggtttttacacacaaatttagaaatgtaataatggtgtcaaaagacatgacaattttactaaacta 1019120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 224
Target Start/End: Original strand, 11528342 - 11528427
Alignment:
Q  139 aaaatgagtgtcgtttaaaattcttatacataaattaataaatgtaataatgatgtcaaaaaatatgacaattttactaaactagc 224  Q
    ||||||||||||||||||| || |||  || || |||| |||| |||||||||| |||||||| || |||||||||||||| ||||    
T  11528342 aaaatgagtgtcgtttaaattttttacgcacaagttaaaaaatataataatgatatcaaaaaacataacaattttactaaattagc 11528427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 222
Target Start/End: Complemental strand, 11458364 - 11458281
Alignment:
Q  139 aaaatgagtgtcgtttaaaattcttatacataaattaataaatgtaataatgatgtcaaaaaatatgacaattttactaaacta 222  Q
    ||||||| ||||||||||  || |||  || || |||| |||| ||||||||||||||||||| || |||||||||||||||||    
T  11458364 aaaatgaatgtcgtttaatttttttacgcacaagttaaaaaatataataatgatgtcaaaaaacataacaattttactaaacta 11458281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 39009604 - 39009546
Alignment:
Q  170 aaattaataaatgtaataatgatgtcaaaaaatatgacaattttactaaactagcctta 228  Q
    ||||||| |||||||||||||||||||||  | || ||||||||||||||||| |||||    
T  39009604 aaattaagaaatgtaataatgatgtcaaaggacatcacaattttactaaactaacctta 39009546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 238
Target Start/End: Original strand, 32979845 - 32979911
Alignment:
Q  172 attaataaatgtaataatgatgtcaaaaaatatgacaattttactaaactagccttaattactattg 238  Q
    ||||| ||||| ||||||  |||| |||||||||||| |||||||||| |||||||| | |||||||    
T  32979845 attaaaaaatgcaataatattgtccaaaaatatgacacttttactaaaatagccttattaactattg 32979911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 139 - 239
Target Start/End: Complemental strand, 6596703 - 6596603
Alignment:
Q  139 aaaatgagtgtcgtttaaaattcttatacataaattaataaatgtaataatgatgtcaaaaaatatgacaattttactaaactagccttaattactattg 238  Q
    ||||||||||| |||||| ||| ||| ||| ||||||| ||||||| || | ||||||||| | ||||||||||||| |||| | ||||| |||||||||    
T  6596703 aaaatgagtgttgtttaagatttttagacacaaattaagaaatgtactagtaatgtcaaaagaaatgacaattttaccaaacaaaccttatttactattg 6596604  T
Q  239 g 239  Q
    |    
T  6596603 g 6596603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 239
Target Start/End: Complemental strand, 27124112 - 27124043
Alignment:
Q  170 aaattaataaatgtaataatgatgtcaaaaaatatgacaattttactaaactagccttaattactattgg 239  Q
    ||||||| |||||| |||||| |||||||| | |||||||||||||||||||| ||||| ||| ||||||    
T  27124112 aaattaagaaatgtgataatggtgtcaaaagacatgacaattttactaaactaaccttatttattattgg 27124043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 170 - 238
Target Start/End: Original strand, 18428373 - 18428440
Alignment:
Q  170 aaattaataaatgtaataatgatgtcaaaaaatatgacaattttactaaactagccttaattactattg 238  Q
    ||||||| |||||||||||||||||||||| | ||||||| ||||  |||||||||||| |||||||||    
T  18428373 aaattaagaaatgtaataatgatgtcaaaagacatgacaa-tttatcaaactagccttatttactattg 18428440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 239
Target Start/End: Complemental strand, 23690362 - 23690270
Alignment:
Q  147 tgtcgtttaaaattcttatacataaattaataaatgtaataatgatgtcaaaaaatatgacaattttactaaactagccttaattactattgg 239  Q
    ||||||||||  || |||||  || ||||| ||||||||| ||| ||||||||||| |||||||||||  |||||| | ||| ||||||||||    
T  23690362 tgtcgtttaaggtttttatatgtatattaaaaaatgtaatgatggtgtcaaaaaatttgacaattttatcaaactaactttatttactattgg 23690270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 28706892 - 28706838
Alignment:
Q  168 ataaattaataaatgtaataatgatgtcaaaaaatatgacaattttactaaacta 222  Q
    ||||||||| |||||||||||| |||| |||| | |||| |||||||||||||||    
T  28706892 ataaattaaaaaatgtaataattatgttaaaatacatgataattttactaaacta 28706838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 215
Target Start/End: Original strand, 8231503 - 8231571
Alignment:
Q  147 tgtcgtttaaaattcttatacataaattaataaatgtaataatgatgtcaaaaaatatgacaattttac 215  Q
    |||||||||||||| ||||||||| ||||| ||||| ||||||  |||| ||| | |||||| ||||||    
T  8231503 tgtcgtttaaaattgttatacatatattaagaaatgcaataatattgtccaaagacatgacacttttac 8231571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 235
Target Start/End: Complemental strand, 15550 - 15453
Alignment:
Q  139 aaaatgagtgtcgtttaaaattcttatacataaattaataaatgtaataatgatgtcaaaaa-atatgacaattttactaaactagccttaattacta 235  Q
    ||||||| ||| |||||||| | ||||| |||| |||| ||||||||||||||||| ||||| | ||||||||||||  | |||| ||||| ||||||    
T  15550 aaaatgaatgttgtttaaaaattttatatataatttaagaaatgtaataatgatgtaaaaaagacatgacaattttatcagactaaccttatttacta 15453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 227
Target Start/End: Original strand, 26405203 - 26405291
Alignment:
Q  139 aaaatgagtgtcgtttaaaattcttatacataaattaataaatgtaataatgatgtcaaaaaatatgacaattttactaaactagcctt 227  Q
    ||||||||||| ||||||  || ||| ||| | ||||||||||| ||||||| |||| | | | |||||| |||||||||| |||||||    
T  26405203 aaaatgagtgtggtttaaggttgttacacacatattaataaatgcaataatgttgtctatagacatgacacttttactaaaatagcctt 26405291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University