View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11820_low_9 (Length: 239)
Name: NF11820_low_9
Description: NF11820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11820_low_9 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 6172593 - 6172362
Alignment:
| Q |
17 |
aaatcagatgggttaagagtctcatatcaatggaaaattcagaga--tctgtcaccataggtcacacccaattcaattgcaaatttcacgaagattctga |
114 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
6172593 |
aaatcagatgggttaagaggctcatatcaatggaaaattcagagagatctgtcaccatagggaacaaccaattcaattgcaaatttcacgaagattctga |
6172494 |
T |
|
| Q |
115 |
ttttccaattaaattagtaatt-------cccactaaagctctttcattgtgatcatcacctttttctctctacatttagcaaaacagctgaagccagag |
207 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6172493 |
ttttccaattaaattagtaattagtaattcccactaaagctctttcattgtgatcatcacctttttctctctacatttagcaaaacagctgaagccagag |
6172394 |
T |
|
| Q |
208 |
aacagtaaatctaaaccacatttatatagaat |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
6172393 |
aacagtaaatctaaaccacatttatatagaat |
6172362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 17 - 151
Target Start/End: Complemental strand, 6176330 - 6176194
Alignment:
| Q |
17 |
aaatcagatgggttaagagtctcatatcaatggaaaattcagaga--tctgtcaccataggtcacacccaattcaattgcaaatttcacgaagattctga |
114 |
Q |
| |
|
|||||| |||||||||| | |||||||||| | ||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||| || |
|
|
| T |
6176330 |
aaatcatatgggttaaggggatcatatcaattgtaaatttagagagatctgtcaccataggaaacacccaattcaattgcaaatttcacgaagatataga |
6176231 |
T |
|
| Q |
115 |
ttttccaattaaattagtaattcccactaaagctctt |
151 |
Q |
| |
|
|||||||||| |||||||| || |||||||||||||| |
|
|
| T |
6176230 |
ttttccaattgaattagtattttccactaaagctctt |
6176194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 106 - 238
Target Start/End: Complemental strand, 30487216 - 30487083
Alignment:
| Q |
106 |
agattctgattttccaattaaattagtaattcccactaaag-ctctttcattgtgatcatcacctttttctctctacatttagcaaaacagctgaagcca |
204 |
Q |
| |
|
|||||||||||||| ||| |||| ||| |||||||||||| |||| ||||||| ||||| || |||||| |||||||| ||||||| |||||||| || |
|
|
| T |
30487216 |
agattctgattttctgattgaattggtatttcccactaaagcctctctcattgtaatcatagcccttttctttctacattcagcaaaatagctgaagaca |
30487117 |
T |
|
| Q |
205 |
gagaacagtaaatctaaaccacatttatatagaa |
238 |
Q |
| |
|
|||||||| ||| ||| |||| |||||||||| |
|
|
| T |
30487116 |
aagaacagtgaatataacccacgcttatatagaa |
30487083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 227
Target Start/End: Complemental strand, 30518386 - 30518264
Alignment:
| Q |
106 |
agattctgattttccaattaaattagtaattcccactaaagc-tctttcattgtgatcatcacctttttctctctacatttagcaaaacagctgaagcca |
204 |
Q |
| |
|
||||||| ||||||| || | || ||| ||||||||| ||| ||| ||||||| ||||| || |||||| |||||||| |||||||||||||||| | |
|
|
| T |
30518386 |
agattctaattttccgcttgagttggtatttcccactagagcctctctcattgtaatcatagcccttttctttctacattcagcaaaacagctgaaggcg |
30518287 |
T |
|
| Q |
205 |
gagaacagtaaatctaaaccaca |
227 |
Q |
| |
|
|||||||| ||| ||| ||||| |
|
|
| T |
30518286 |
aagaacagtgaatataacccaca |
30518264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University