View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11821_high_10 (Length: 459)
Name: NF11821_high_10
Description: NF11821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11821_high_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 19 - 374
Target Start/End: Original strand, 36281692 - 36282044
Alignment:
| Q |
19 |
agtcacatccaagaaatagatgattaattgtttccttctttaaataccattacaaacatagtaatgaaccggtaggcaccacattacagcnnnnnnntat |
118 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| || ||| |
|
|
| T |
36281692 |
agtcatatccaagaaatagatgattaattgtttccttctttaaataccattacaaacatagtaacgaagcggtaggcaccacattagggcaaaaaa-tat |
36281790 |
T |
|
| Q |
119 |
tatcctttgatgggattctttaattgaaaatctccaagcaaataacgacacttttagaggcataactttataccaaattatgtgtgacagaatatcaaag |
218 |
Q |
| |
|
||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36281791 |
tattctttgatgggattctataattgaaaatctccaagcaaataacgatacttttaaaggcataactttataccaaattatgtgtgacagaatatcaaag |
36281890 |
T |
|
| Q |
219 |
ttagaatgttcaactctagtaagattctgataagcaccatttaccaaataaccatcaatggagttttataaccaaactcgtttagttgtcacattgtcct |
318 |
Q |
| |
|
|| |||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
36281891 |
ttggaatattcaactctagtaagaatctgataagcaccctttaccaaataaccatcaatgaagttttataaccaaactcgtttatctgtcacgttgtcct |
36281990 |
T |
|
| Q |
319 |
gcnnnnnnnnntgttatttaacaaagaaacacattgttccatttaatcctctccca |
374 |
Q |
| |
|
|| || |||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
36281991 |
gc--aaaaaaatgatatttaacaaagaaccacattgtttcatttaatcctctccca |
36282044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 401 - 451
Target Start/End: Original strand, 36282071 - 36282121
Alignment:
| Q |
401 |
cctctccaccgccatcatgcctctccacccccaacctagcctcttcatctc |
451 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
36282071 |
cctctccaccgccatcatgcctctccacccccaacatagcctcttcatctc |
36282121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 368
Target Start/End: Original strand, 32661749 - 32661787
Alignment:
| Q |
330 |
tgttatttaacaaagaaacacattgttccatttaatcct |
368 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
32661749 |
tgttatctaacaaagaaacacattgttccaattaatcct |
32661787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University