View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11821_high_15 (Length: 372)
Name: NF11821_high_15
Description: NF11821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11821_high_15 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 8 - 372
Target Start/End: Complemental strand, 18513775 - 18513411
Alignment:
| Q |
8 |
aagcaaaggttgtaaagtgcaaatagtttaggtgctaaaatgttgctaagtggtgtttgctgaagcgttattaacactaaatgttgcttacatcagaaaa |
107 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18513775 |
aagccaaggttgtaaagtgcaaatagtttaggtgctaaaatgttgctaagtcgtgtttgctgaagcgttattaacactaaatgttgcttacatcagaaaa |
18513676 |
T |
|
| Q |
108 |
tttctctagnnnnnnncgctcgcatatgagaacatgtcttacgttggtgaaatttcatctcttttcattccttctatttacaaatcttgatcttatttgc |
207 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18513675 |
tttctctagtttttttcgctcgcatatgagaacatgtcttacgttggtgaaatttcatctcttttcattccttctatttacaaatcttgatcttatttgc |
18513576 |
T |
|
| Q |
208 |
tgattagaagttctcaatcatcaaaaatcgaaatagggtaacatatgtgttactctaaggctgtcatcatgtacacatgcaatttttctaagcttatgct |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18513575 |
tgattagaagttctcaatcatcaaaaatcgaaatagggtaacatatgtgttactctaaggctgtcatcatgtacacatgcaatttttctaagcttatgct |
18513476 |
T |
|
| Q |
308 |
acaattaatagttcaataccatgcattgatagattgcaccatttttactgcacagatggatgcac |
372 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18513475 |
acaattaatagttcaataccatgcattgatagattgcaccatttttactgcacagatggatgcac |
18513411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 138 - 372
Target Start/End: Original strand, 14515997 - 14516229
Alignment:
| Q |
138 |
aacatgtcttacgttggtgaaatttcatctcttttcattccttctatttacaaatcttgatcttatttgct---gattagaagttctcaatcatcaaaaa |
234 |
Q |
| |
|
|||| |||| |||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||| | |||||||||||||| || |||| |
|
|
| T |
14515997 |
aacacgtctcacgttggtgaaatttcat-----ttcattccttctatttacaaaacttaatcttatttgctactgtttagaagttctcaactctctaaaa |
14516091 |
T |
|
| Q |
235 |
tcgaaatagggtaacatatgtgttactctaaggctgtcatcatgtacacatgcaatttttctaagcttatgctacaattaatagttc-aataccatgcat |
333 |
Q |
| |
|
|| ||||| ||||||| |||||| | | ||| ||||||||||||||||||||||| |||||||||||||| | |||||||||||||| ||||||||| | |
|
|
| T |
14516092 |
tcaaaatatggtaacacatgtgtcattgtaaagctgtcatcatgtacacatgcaagttttctaagcttataccacaattaatagttctaataccatg-gt |
14516190 |
T |
|
| Q |
334 |
tgatagattgcaccatttttactgcacagatggatgcac |
372 |
Q |
| |
|
|||||||||||| | |||||||| ||||||||||||||| |
|
|
| T |
14516191 |
tgatagattgcagcctttttacttcacagatggatgcac |
14516229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 14515886 - 14515821
Alignment:
| Q |
8 |
aagcaaaggttgtaaagtgcaaatagtttaggtgctaaaatgttgctaagtggtgtttgctgaagc |
73 |
Q |
| |
|
|||| ||||||||| | ||||||||||||||||||||||||| |||||||||||| ||||| |||| |
|
|
| T |
14515886 |
aagctaaggttgtagactgcaaatagtttaggtgctaaaatgctgctaagtggtgcttgctaaagc |
14515821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 8e-43; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 171 - 358
Target Start/End: Original strand, 13112095 - 13112285
Alignment:
| Q |
171 |
ttcattccttctatttacaaatcttgatcttatttgctg---attagaagttctcaatcatcaaaaatcgaaatagggtaacatatgtgttactctaagg |
267 |
Q |
| |
|
||||||||||||||||| || ||||||||| |||||| |||||||||||||||| || |||||| ||||||||||| | |||||||||| ||| | |
|
|
| T |
13112095 |
ttcattccttctatttataatacttgatcttctttgctactaattagaagttctcaattctctaaaatcaaaatagggtaaaacatgtgttactgtaaag |
13112194 |
T |
|
| Q |
268 |
ctgtcatcatgtacacatgcaatttttctaagcttatgctacaattaatagttcaataccatgcattgatagattgcaccatttttactgc |
358 |
Q |
| |
|
||| |||||||||||||| |||||||||||||||||||| | |||||||||||||||||||| || |||||| ||| ||| |||||||||| |
|
|
| T |
13112195 |
ctgccatcatgtacacattcaatttttctaagcttatgccataattaatagttcaataccatccagtgataggttgaaccctttttactgc |
13112285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 74
Target Start/End: Original strand, 13111990 - 13112031
Alignment:
| Q |
33 |
gtttaggtgctaaaatgttgctaagtggtgtttgctgaagcg |
74 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
13111990 |
gtttaggtgctaaaatgctgctaagtggtgcttgctgaagcg |
13112031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 18673071 - 18673107
Alignment:
| Q |
207 |
ctgattagaagttctcaatcatcaaaaatcgaaatag |
243 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
18673071 |
ctgattagaagttctcaattatcaaaaatcgaaatag |
18673107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University