View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11821_high_16 (Length: 372)
Name: NF11821_high_16
Description: NF11821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11821_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 38174055 - 38173705
Alignment:
| Q |
1 |
catttccaaaaagaaaccaaaaccgaaaccctcattggttgccgatatggaaaccaagtacatattttcgctattaattccatcaaatctttctgttaac |
100 |
Q |
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| T |
38174055 |
catttccaaaaagaaaccaaaaccgaaaccctcattggttgccgatatggaaaccaagtacaaattttcgctattaattccatcaaatctttttgttaac |
38173956 |
T |
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| Q |
101 |
cctaaacctaatccctcttccgccgcgcctccacaaaaaatatggacaacaacgaccacgatttcgccctcgccgattccttcattaattttgattatgc |
200 |
Q |
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| T |
38173955 |
cctaaacctaatccctcttccgccgcgcctccacaaaaaacatggacaacgacgacgacgttttcgccctcgccgattccttcattaattttgattatgc |
38173856 |
T |
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| Q |
201 |
ccctgattctcctcctcctctttcggatcctcctgttgcgtgttccggtgttgaaaatgaagttaatgaaaatgtcgagattattgatgctgttgttaga |
300 |
Q |
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| T |
38173855 |
ccctgattcccctcctcctctttcggatcctcccgttgcgtgttccggtgttgaaaatgaagttaatgaaaatgtcgagattattgatgctgttgttaga |
38173756 |
T |
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| Q |
301 |
agcgagattatcgctaatgatgatgaaattagaggcgacattattgctaat |
351 |
Q |
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| T |
38173755 |
agcgagattatctctaatgatgatgaaattagaggcgacattattactaat |
38173705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 26415287 - 26415363
Alignment:
| Q |
20 |
aaaccgaaaccctcattggttgccgatatggaaaccaagtacatattttcgctattaattccatcaaatctttctgtt |
97 |
Q |
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| T |
26415287 |
aaacctaaatcctcattggttgccgatatggaaaccaagtaca-attttttctattaattccacgaaatctttgtgtt |
26415363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 26416898 - 26416826
Alignment:
| Q |
25 |
gaaaccctcattggttgccgatatggaaaccaagt-acatattttcgctattaattccatcaaatctttctgtt |
97 |
Q |
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|||||||||||||||| |||||||||||| || || |||| ||||| |||||||||||| ||||||||| |||| |
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| T |
26416898 |
gaaaccctcattggttcccgatatggaaagcatgtcacattttttc-ctattaattccaccaaatctttatgtt |
26416826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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