View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11821_high_19 (Length: 332)
Name: NF11821_high_19
Description: NF11821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11821_high_19 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 82 - 316
Target Start/End: Complemental strand, 18513274 - 18513036
Alignment:
| Q |
82 |
gcatatagcgaagaaggagatatagaaatttggattgggataagcttaatatcaaagaaagctaatgaggactggtggtttgaagttgtatcttccttta |
181 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18513274 |
gcatatagcgaataaggagatatagaaatttggattgggataagcttaatatcaaagaaagctaatgaggactggtggtttgaagttgtatcttccttta |
18513175 |
T |
|
| Q |
182 |
gtttggcattgtataaaagctttatgcagggttacatt----aaacctaggagaatagttggatcccttgtttactatgcaaaaatccatatgatcacct |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18513174 |
gtttggcattgtataaaagctttatgcagggttacattcataaaacctaggagaatagttggatcccttgtttactatgcaaaaatccatatgatcacct |
18513075 |
T |
|
| Q |
278 |
ctttgtgtagtccatcaagtttttagaatagatagttag |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18513074 |
ctttgtgtagtccatcaagtttttagaatagatagttag |
18513036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 18513332 - 18513416
Alignment:
| Q |
1 |
atttatgtaagctaaacgtaagagcagataaattacaagcatttatgtgcatgtgtacaggaatagaactattgattatgtgcat |
85 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18513332 |
atttatgtaagctaaacgtaagagcagataaattacaagcatttatgtgcatgtgtacaggaatagaactattgattatgtgcat |
18513416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 213
Target Start/End: Complemental strand, 1985313 - 1985270
Alignment:
| Q |
170 |
tatcttcctttagtttggcattgtataaaagctttatgcagggt |
213 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
1985313 |
tatcttcctttaatttgtcattgtataaaagctttatgcagggt |
1985270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 107 - 311
Target Start/End: Original strand, 14516394 - 14516610
Alignment:
| Q |
107 |
aaatttggattgggataagcttaatatcaaagaaagctaatgaggactggtggtttgaagttgtatcttcctttagtttggcattgtataaaagctttat |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||| | ||| |
|
|
| T |
14516394 |
aaatttggattgggataagcttaatatcaaagaaacctaatgaagactggtggtttgaagttgtatcttccttgaatttggcattgtataaaagttgtat |
14516493 |
T |
|
| Q |
207 |
gcagggt------------tacattaaacctaggagaatagttggatcccttgtttactatgcaaaaatccatatgatcacctctttgtgtagtccatca |
294 |
Q |
| |
|
|||| || ||||| ||||||| |||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
14516494 |
gcagagtggtaattcaaaatacataaaacctaagagaattcttggatcccttgtttactgtgcaaaaatccatatgatcgcctctttgtgtagtccatca |
14516593 |
T |
|
| Q |
295 |
agtttttagaatagata |
311 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
14516594 |
agttttcagaatagata |
14516610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 14516310 - 14516224
Alignment:
| Q |
1 |
atttatgtaagctaaacgtaagagcaga--taaattacaagcatttatgtgcatgtgtacaggaatagaactattgattatgtgcat |
85 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||| |
|
|
| T |
14516310 |
atttatgtaagctaaacataagagcagccctaaattacaagcatttatgtgcatgtgtacaagaataaaactattaattatgtgcat |
14516224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 13112365 - 13112294
Alignment:
| Q |
1 |
atttatgtaagctaaacgtaagagcagataaattacaagcatttatgtgcatgtgtacaggaatagaactatt |
73 |
Q |
| |
|
||||||||||| |||| ||||||||| |||||||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
13112365 |
atttatgtaaggtaaaa-taagagcaggtaaattacaagcatttatgtgcatgtatacaggaatataactatt |
13112294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 229 - 306
Target Start/End: Complemental strand, 6942383 - 6942306
Alignment:
| Q |
229 |
agaatagttggatcccttgtttactatgcaaaaatccatatgatcacctctttgtgtagtccatcaagtttttagaat |
306 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||| |||||||||| ||||||| ||||| |||||||||| ||||| |
|
|
| T |
6942383 |
agaatacttggatcccttctttactatgcaaaaaaccatatgatctactctttggatagtctatcaagttttcagaat |
6942306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University