View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11821_high_24 (Length: 310)
Name: NF11821_high_24
Description: NF11821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11821_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 21 - 294
Target Start/End: Complemental strand, 45641489 - 45641216
Alignment:
| Q |
21 |
ttcgtttccttcaacgaaaaacaatttcgctttatccatgaaaatgttgccacgtccactatatgcagcatgtttggtgagaacaatagctagtatgcaa |
120 |
Q |
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| T |
45641489 |
ttcgtttccttcaatgaaaaacaatttcgctttatccatgaaaatgttgccacgtccactatatgcagcatgtttagtgagaacaatagctagtatgcaa |
45641390 |
T |
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| Q |
121 |
acgccgttgtgacacattattaggaagtgcatacttcaatgcttttcatacatcatcaatcgtttaaggattatcaggaatttcagactcttgcgccctc |
220 |
Q |
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| T |
45641389 |
acgccgttgtgacacattagtaggaagtgcatacttcaatgcttttcatacatcatcaaccgtttaaggattatcaggaatttcagactcttgcgccctc |
45641290 |
T |
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| Q |
221 |
tctcgtgtcatctcaaatctcaatccagtaacacttcaagccaatcctcgggaattcccattgaaaaccctttg |
294 |
Q |
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| T |
45641289 |
tctcgtgtcatctcaaatctcaatccagtaacacttcaagccaatcctcgggaattccccttgaaaaccctttg |
45641216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 32 - 294
Target Start/End: Complemental strand, 45647945 - 45647687
Alignment:
| Q |
32 |
caacgaaaaacaatttcgctttatccatgaaaatgttgccacgtccactatatgcagcatgtttggtgagaacaatagctagtatgcaaacgccgttgtg |
131 |
Q |
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||||||||||||||||| ||| | ||||||||||||||||| ||||||| | |||| | ||| |||| ||||||||| | || || | ||| ||| |
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| T |
45647945 |
caacgaaaaacaatttccatttcttcatgaaaatgttgccacatccactacaggcagtaagttcagtgaaaacaatagccattacgcgcatgccattggc |
45647846 |
T |
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| Q |
132 |
-acacattattaggaagtgcatacttcaatgcttttcatacatcatcaatcgtttaaggattatcaggaatttcagactcttgcgccctctctcgtgtca |
230 |
Q |
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| T |
45647845 |
tacgcctcattaggaaatgaagacttcaatgtttttcataccgcaccaagcattcaaggattatcaggaatttcagactcttgtgctctctctctt---- |
45647750 |
T |
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| Q |
231 |
tctcaaatctcaatccagtaacacttcaagccaatcctcgggaattcccattgaaaaccctttg |
294 |
Q |
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|| ||||||||||| ||||||||||||||| ||||||| ||||||| |||| ||||||||| |
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| T |
45647749 |
-ctgtcatctcaatccaataacacttcaagccagtcctcggaaattccctttgataaccctttg |
45647687 |
T |
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