View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11821_high_25 (Length: 302)
Name: NF11821_high_25
Description: NF11821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11821_high_25 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 31046612 - 31046329
Alignment:
| Q |
1 |
ttcagacacttacaagtatcggagactagagactgaacatgcatttgataagaagtgttggtaggtatttaagagttaagagcttaccgttactagtttg |
100 |
Q |
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| T |
31046612 |
ttcagacacttacaagtgtcggaaactagagactgaacatgcatttgata-gaaatgttggtaggtatttaagagttaagagctcaccgctactagtttg |
31046514 |
T |
|
| Q |
101 |
agaaagagaaatggttggcgcgttattctattcctgtgaattgaagaatgaaaatttagaagtcaattatggtcaaaatgcgttgaattattcataggag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31046513 |
agaaagagaaatggttggcgcgttattctattcctgtgaattgaagaatgaaaatttagaagtcaattatggtcaaaatgcgttgaattattcataggag |
31046414 |
T |
|
| Q |
201 |
tttctacaggtagatattttagtggattctagcatattggcataattctagtatagtagtgacgtaaaaggtttacgggtctgtg |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
31046413 |
tttctacaggtagatattttagtggattctagcatattggcataattctagtatagtagtgacgtaaaaggtttatgggtttgtg |
31046329 |
T |
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