View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11821_high_27 (Length: 280)
Name: NF11821_high_27
Description: NF11821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11821_high_27 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 39237862 - 39238161
Alignment:
| Q |
1 |
ggacttgctctccctcttcttgatgaactccttcaagatgtacgtttgcctcatttctgatcaactttatttcattattaattattactattcttttaca |
100 |
Q |
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| T |
39237862 |
ggacttgctctccctcttcttgatgaactccttcaagatgtacgtttgcctcatttctgatcaactttatttcattattaattattactattcttttaca |
39237961 |
T |
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| Q |
101 |
aagtccaatttgatttcatccatgcatgtttagtaaacttcgaatat-aaaatgtattactcctccgatcttatttataataaaaatttgttgatcta-- |
197 |
Q |
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| T |
39237962 |
aagtccaatttaatttcatccatgcatgtttagtaaacttcgaatataaaaatgtattactccttcgatcttatttataataaaaatttgctgatctaaa |
39238061 |
T |
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| Q |
198 |
-----------------accggagggagtatgattaactacttgaattggtgtccatcaattttacaggaaaataacaaagggacgtttgactttgtttt |
280 |
Q |
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| T |
39238062 |
tatctcttataaatatgaccggaggaagtatgattaattaattgaattggtgtccatcaattttgcaggaaaataacaaagggacgtttgactttgtttt |
39238161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 280
Target Start/End: Original strand, 39055825 - 39055883
Alignment:
| Q |
222 |
ttgaattggtgtccatcaattttacaggaaaataacaaagggacgtttgactttgtttt |
280 |
Q |
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| T |
39055825 |
ttgaattggtgtccattaattttgcaggaaaataacaagggggcatttgattttgtttt |
39055883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 39049640 - 39049680
Alignment:
| Q |
1 |
ggacttgctctccctcttcttgatgaactccttcaagatgt |
41 |
Q |
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| T |
39049640 |
ggacctgctctccctcttcttgatcaacttcttcaagatgt |
39049680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 39291396 - 39291356
Alignment:
| Q |
1 |
ggacttgctctccctcttcttgatgaactccttcaagatgt |
41 |
Q |
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|||| |||||||||||| ||||||||||| ||||||||||| |
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| T |
39291396 |
ggacctgctctccctctacttgatgaacttcttcaagatgt |
39291356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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