View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11821_high_32 (Length: 242)

Name: NF11821_high_32
Description: NF11821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11821_high_32
NF11821_high_32
[»] chr3 (2 HSPs)
chr3 (7-226)||(38938649-38938868)
chr3 (11-226)||(7052553-7052768)
[»] scaffold0256 (1 HSPs)
scaffold0256 (5-219)||(9794-10008)
[»] chr6 (13 HSPs)
chr6 (5-219)||(16781749-16781963)
chr6 (7-225)||(18872478-18872696)
chr6 (7-224)||(16797818-16798035)
chr6 (7-224)||(17070155-17070372)
chr6 (7-226)||(16658658-16658877)
chr6 (7-207)||(16838330-16838530)
chr6 (7-225)||(18586996-18587214)
chr6 (7-225)||(18793915-18794133)
chr6 (7-225)||(18870001-18870219)
chr6 (7-224)||(16867300-16867517)
chr6 (10-224)||(16988109-16988314)
chr6 (9-223)||(16788616-16788817)
chr6 (7-119)||(18805590-18805702)
[»] scaffold0133 (2 HSPs)
scaffold0133 (5-219)||(9151-9365)
scaffold0133 (7-219)||(13501-13713)
[»] scaffold0511 (1 HSPs)
scaffold0511 (7-225)||(10008-10226)
[»] scaffold0230 (1 HSPs)
scaffold0230 (7-225)||(5328-5546)
[»] scaffold0144 (1 HSPs)
scaffold0144 (7-219)||(38136-38348)
[»] chr8 (1 HSPs)
chr8 (152-226)||(13378891-13378965)


Alignment Details
Target: chr3 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 7 - 226
Target Start/End: Complemental strand, 38938868 - 38938649
Alignment:
Q  7 ctccttcatcctctttccaatgttgcgacgagccaaaatcttcagaggttgaaaacgggggatcctcttgttgtcgccatgtgcttttaaggttattgaa 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || ||||| | ||||| ||||||||||||||||||||||||||||||||||    
T  38938868 ctccttcatcctctttccaatgttgcgacgagccaaaatcttcagaggatggaaacgagtgatccacttgttgtcgccatgtgcttttaaggttattgaa 38938769  T
Q  107 cattcatccaatacatcatcaaggacataaacagcatcacgcagtttctgcagccagtctttcacaacatggcttgtaatttgctgctcttcagcatctt 206  Q
    ||||||||||||| ||||||||| |||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  38938768 cattcatccaatatatcatcaagtacataagcaacatcacgcaatttctgcagccagtctttcacaacatggcttgtaatttgcttctcttcagcatctt 38938669  T
Q  207 tgaggacagcacgaattgca 226  Q
    ||||||||||||||||||||    
T  38938668 tgaggacagcacgaattgca 38938649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 11 - 226
Target Start/End: Complemental strand, 7052768 - 7052553
Alignment:
Q  11 ttcatcctctttccaatgttgcgacgagccaaaatcttcagaggttgaaaacgggggatcctcttgttgtcgccatgtgcttttaaggttattgaacatt 110  Q
    |||||||||||||||||||  || |||||||||||||||  ||| || ||||||| ||||| ||||||||| |||   | |||| | |||||||||||||    
T  7052768 ttcatcctctttccaatgtcacgccgagccaaaatcttcttaggatggaaacgggtgatccacttgttgtctccacagggttttgatgttattgaacatt 7052669  T
Q  111 catccaatacatcatcaaggacataaacagcatcacgcagtttctgcagccagtctttcacaacatggcttgtaatttgctgctcttcagcatctttgag 210  Q
    | ||||||| ||||||||| |||| | ||||||||  ||| ||||||||||| ||||| ||| |||||||||||||||||| | ||||||| ||||||||    
T  7052668 cgtccaatatatcatcaagaacatgagcagcatcagccagcttctgcagccaatcttttacagcatggcttgtaatttgcttcacttcagcgtctttgag 7052569  T
Q  211 gacagcacgaattgca 226  Q
     | |||||||||||||    
T  7052568 tatagcacgaattgca 7052553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 5 - 219
Target Start/End: Original strand, 9794 - 10008
Alignment:
Q  5 atctccttcatcctctttccaatgttgcgacgagccaaaatcttcagaggttgaaaacgggggatcctcttgttgtcgccatgtgcttttaaggttattg 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||| | ||||| ||||||||||||||||||||||||||||||||    
T  9794 atctccttcatcctctttccaatgttgcgacgagccaaaatcttcataggatggaaacgagtgatccgcttgttgtcgccatgtgcttttaaggttattg 9893  T
Q  105 aacattcatccaatacatcatcaaggacataaacagcatcacgcagtttctgcagccagtctttcacaacatggcttgtaatttgctgctcttcagcatc 204  Q
    ||||||||||||||| ||||||||| |||||| ||||||||||||||| ||| ||||| ||||| ||| ||| | |||| ||||||| || |||||||||    
T  9894 aacattcatccaatatatcatcaagcacataagcagcatcacgcagttgctgtagccactctttgacagcatcgtttgttatttgcttcttttcagcatc 9993  T
Q  205 tttgaggacagcacg 219  Q
    ||| |||||||||||    
T  9994 ttttaggacagcacg 10008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 5 - 219
Target Start/End: Original strand, 16781749 - 16781963
Alignment:
Q  5 atctccttcatcctctttccaatgttgcgacgagccaaaatcttcagaggttgaaaacgggggatcctcttgttgtcgccatgtgcttttaaggttattg 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||| | ||||| ||||||||||||||||||||||||||||||||    
T  16781749 atctccttcatcctctttccaatgttgcgacgagccaaaatcttcataggatggaaacgagtgatccgcttgttgtcgccatgtgcttttaaggttattg 16781848  T
Q  105 aacattcatccaatacatcatcaaggacataaacagcatcacgcagtttctgcagccagtctttcacaacatggcttgtaatttgctgctcttcagcatc 204  Q
    ||||||| ||||||| ||||||||| |||||| ||||||||||||||| ||| | ||| ||||||||| |||   |||| ||||||| || |||||||||    
T  16781849 aacattcgtccaatatatcatcaagcacataagcagcatcacgcagttgctgtaaccactctttcacagcatcatttgttatttgcttcttttcagcatc 16781948  T
Q  205 tttgaggacagcacg 219  Q
    ||| |||||||||||    
T  16781949 ttttaggacagcacg 16781963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 7 - 225
Target Start/End: Complemental strand, 18872696 - 18872478
Alignment:
Q  7 ctccttcatcctctttccaatgttgcgacgagccaaaatcttcagaggttgaaaacgggggatcctcttgttgtcgccatgtgcttttaaggttattgaa 106  Q
    ||||||||||||||||||||| |  ||||||||||||||||||  ||| || ||||||| ||||| ||||||||| |||||||||||| | ||||||| |    
T  18872696 ctccttcatcctctttccaatatcccgacgagccaaaatcttcttaggatggaaacgggtgatccacttgttgtctccatgtgcttttgatgttattgta 18872597  T
Q  107 cattcatccaatacatcatcaaggacataaacagcatcacgcagtttctgcagccagtctttcacaacatggcttgtaatttgctgctcttcagcatctt 206  Q
    || |||||||||| ||||||||| |||||  || |||||  ||| ||||||||||| |||||||||||| ||||||| | ||||| ||||||||||||||    
T  18872596 caatcatccaatatatcatcaagaacataggcaacatcagtcagcttctgcagccaatctttcacaacacggcttgttagttgcttctcttcagcatctt 18872497  T
Q  207 tgaggacagcacgaattgc 225  Q
     ||||||||||||||||||    
T  18872496 ggaggacagcacgaattgc 18872478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 16797818 - 16798035
Alignment:
Q  7 ctccttcatcctctttccaatgttgcgacgagccaaaatcttcagaggttgaaaacgggggatcctcttgttgtcgccatgtgcttttaaggttattgaa 106  Q
    ||||||||||||||||||||||||||||||||||||||| ||||  || |||||||||| ||| | ||||||| |  ||||||||||| | |||||||||    
T  16797818 ctccttcatcctctttccaatgttgcgacgagccaaaattttcattggatgaaaacgggtgatgcacttgttgccttcatgtgcttttgaagttattgaa 16797917  T
Q  107 cattcatccaatacatcatcaaggacataaacagcatcacgcagtttctgcagccagtctttcacaacatggcttgtaatttgctgctcttcagcatctt 206  Q
    ||||||||||||| ||||||||| |||||| ||||||||| || |||||||||||| | || |||||||| |||||| || |||| || |||||||||||    
T  16797918 cattcatccaatatatcatcaagtacataagcagcatcacccaatttctgcagccatttttgcacaacatcgcttgttatctgcttcttttcagcatctt 16798017  T
Q  207 tgaggacagcacgaattg 224  Q
    | || |||||||| ||||    
T  16798018 ttagtacagcacggattg 16798035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 17070155 - 17070372
Alignment:
Q  7 ctccttcatcctctttccaatgttgcgacgagccaaaatcttcagaggttgaaaacgggggatcctcttgttgtcgccatgtgcttttaaggttattgaa 106  Q
    |||||||||||||||||||||||||||| |||||||||||||||  || || ||||||| ||| | ||||||| |  ||||||||||| | |||||||||    
T  17070155 ctccttcatcctctttccaatgttgcgatgagccaaaatcttcattggatggaaacgggtgatgcacttgttgccttcatgtgcttttgaagttattgaa 17070254  T
Q  107 cattcatccaatacatcatcaaggacataaacagcatcacgcagtttctgcagccagtctttcacaacatggcttgtaatttgctgctcttcagcatctt 206  Q
    ||||||||||||| ||||||||| |||||| ||||||||| || |||||||||||| | ||||||||||| |||||| || |||| || |||||||||||    
T  17070255 cattcatccaatatatcatcaagtacataagcagcatcacccaatttctgcagccattgtttcacaacatcgcttgttatctgcttcttttcagcatctt 17070354  T
Q  207 tgaggacagcacgaattg 224  Q
    | || |||||||| ||||    
T  17070355 ttagtacagcacggattg 17070372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 7 - 226
Target Start/End: Original strand, 16658658 - 16658877
Alignment:
Q  7 ctccttcatcctctttccaatgttgcgacgagccaaaatcttcagaggttgaaaacgggggatcctcttgttgtcgccatgtgcttttaaggttattgaa 106  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||  | ||| | ||||||| | |||||||||||| | |||||||||    
T  16658658 ctccttcatcctctttccaatgttacgacgagccaaaatcttcataggatgaaaactagtgatgcacttgttgcctccatgtgcttttgaagttattgaa 16658757  T
Q  107 cattcatccaatacatcatcaaggacataaacagcatcacgcagtttctgcagccagtctttcacaacatggcttgtaatttgctgctcttcagcatctt 206  Q
    ||||||||||||| ||||||||| |||||| |||| |||| |||||| ||||||||||   |||||| || | |||| ||||||| || |||||||||||    
T  16658758 cattcatccaatatatcatcaagtacataagcagcgtcacccagtttttgcagccagttcctcacaagatcgtttgttatttgcttcttttcagcatctt 16658857  T
Q  207 tgaggacagcacgaattgca 226  Q
    | || |||||||||||||||    
T  16658858 ttagtacagcacgaattgca 16658877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 7 - 207
Target Start/End: Original strand, 16838330 - 16838530
Alignment:
Q  7 ctccttcatcctctttccaatgttgcgacgagccaaaatcttcagaggttgaaaacgggggatcctcttgttgtcgccatgtgcttttaaggttattgaa 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||  || || ||||||| ||| | ||||||| |  ||||||||||| | |||||||||    
T  16838330 ctccttcatcctctttccaatgttgcgacgagccaaaatcttcattggatggaaacgggtgatgcacttgttgccttcatgtgcttttgaagttattgaa 16838429  T
Q  107 cattcatccaatacatcatcaaggacataaacagcatcacgcagtttctgcagccagtctttcacaacatggcttgtaatttgctgctcttcagcatctt 206  Q
    ||||||||||||| ||||||||| |||||| ||||||||| || |||||||||||| | ||||||||||| |||||| || |||| || ||| |||||||    
T  16838430 cattcatccaatatatcatcaagtacataagcagcatcacccaatttctgcagccattgtttcacaacattgcttgttatctgcttcttttcggcatctt 16838529  T
Q  207 t 207  Q
    |    
T  16838530 t 16838530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 7 - 225
Target Start/End: Complemental strand, 18587214 - 18586996
Alignment:
Q  7 ctccttcatcctctttccaatgttgcgacgagccaaaatcttcagaggttgaaaacgggggatcctcttgttgtcgccatgtgcttttaaggttattgaa 106  Q
    ||||||||||||||||||||| |  | ||||||||||||| ||  ||| || ||||||| ||||| ||||||||| |||||||||||| |  |||||| |    
T  18587214 ctccttcatcctctttccaatatccctacgagccaaaatcatcttaggatggaaacgggtgatccacttgttgtctccatgtgcttttgattttattgta 18587115  T
Q  107 cattcatccaatacatcatcaaggacataaacagcatcacgcagtttctgcagccagtctttcacaacatggcttgtaatttgctgctcttcagcatctt 206  Q
    || |||||||||| ||| ||||| |||||| || |||||  ||| ||||||||||| |||||||||||| ||||||| ||||||| ||||||||||||||    
T  18587114 caatcatccaatatatcgtcaagaacataagcaacatcagtcagcttctgcagccaatctttcacaacacggcttgttatttgcttctcttcagcatctt 18587015  T
Q  207 tgaggacagcacgaattgc 225  Q
     ||||||||||||||||||    
T  18587014 ggaggacagcacgaattgc 18586996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 7 - 225
Target Start/End: Complemental strand, 18794133 - 18793915
Alignment:
Q  7 ctccttcatcctctttccaatgttgcgacgagccaaaatcttcagaggttgaaaacgggggatcctcttgttgtcgccatgtgcttttaaggttattgaa 106  Q
    ||||||||||||||||||||| || | ||||||||||||||||  ||| || ||||||| ||||| ||||||||| |||||||||||| | ||||||| |    
T  18794133 ctccttcatcctctttccaatattcctacgagccaaaatcttcttaggatgtaaacgggtgatccacttgttgtctccatgtgcttttgatgttattgta 18794034  T
Q  107 cattcatccaatacatcatcaaggacataaacagcatcacgcagtttctgcagccagtctttcacaacatggcttgtaatttgctgctcttcagcatctt 206  Q
    || |||||||||| ||||||||| |||||  || |||||   || ||||||||||| |||||||||||| ||||||| ||||||| |||||| |||||||    
T  18794033 caatcatccaatatatcatcaagaacataggcaacatcagttagcttctgcagccaatctttcacaacacggcttgttatttgcttctcttcggcatctt 18793934  T
Q  207 tgaggacagcacgaattgc 225  Q
      |||||||||||||||||    
T  18793933 gaaggacagcacgaattgc 18793915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 7 - 225
Target Start/End: Complemental strand, 18870219 - 18870001
Alignment:
Q  7 ctccttcatcctctttccaatgttgcgacgagccaaaatcttcagaggttgaaaacgggggatcctcttgttgtcgccatgtgcttttaaggttattgaa 106  Q
    ||||||||||||||||||||| |  | ||||||||||||| ||  ||| || |||| || ||||| ||||||||| |||||||||||| |  |||||| |    
T  18870219 ctccttcatcctctttccaatatccctacgagccaaaatcatcttaggatggaaactggtgatccacttgttgtctccatgtgcttttgattttattgta 18870120  T
Q  107 cattcatccaatacatcatcaaggacataaacagcatcacgcagtttctgcagccagtctttcacaacatggcttgtaatttgctgctcttcagcatctt 206  Q
    || |||||||||| ||||||||| |||||| || |||||  ||| ||||||||||| |||||||||||| |||| || ||||||| ||||||||||||||    
T  18870119 caatcatccaatatatcatcaagaacataagcaacatcagtcagcttctgcagccaatctttcacaacacggctcgttatttgcttctcttcagcatctt 18870020  T
Q  207 tgaggacagcacgaattgc 225  Q
     |||||||||  |||||||    
T  18870019 ggaggacagcctgaattgc 18870001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 7 - 224
Target Start/End: Complemental strand, 16867517 - 16867300
Alignment:
Q  7 ctccttcatcctctttccaatgttgcgacgagccaaaatcttcagaggttgaaaacgggggatcctcttgttgtcgccatgtgcttttaaggttattgaa 106  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| || ||||  | ||| | ||||||| | ||||| |||||| | |||||||||    
T  16867517 ctccttcatcctctttccaatgttgcgacgagccaaaatcttcataggatggaaactagtgatgcacttgttgcctccatgcgcttttgaagttattgaa 16867418  T
Q  107 cattcatccaatacatcatcaaggacataaacagcatcacgcagtttctgcagccagtctttcacaacatggcttgtaatttgctgctcttcagcatctt 206  Q
    ||||||||||||| ||||||||| |||||| |||| |||| |||||| ||||||||||   |||||  || | |||| ||||||| || |||||||||||    
T  16867417 cattcatccaatatatcatcaagtacataagcagcgtcacccagtttttgcagccagttcctcacaggatcgtttgttatttgcttcttttcagcatctt 16867318  T
Q  207 tgaggacagcacgaattg 224  Q
    | || ||| |||| ||||    
T  16867317 ttagtacatcacggattg 16867300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 10 - 224
Target Start/End: Original strand, 16988109 - 16988314
Alignment:
Q  10 cttcatcctctttccaatgttgcgacgagccaaaatcttcagaggttgaaaacgggggatcctcttgttgtcgccatgtgcttttaaggttattgaacat 109  Q
    |||||||||||| |||||||||||| ||||||||||||||| ||| || ||||  |         ||||||| |||||||||||| |||||||||| |||    
T  16988109 cttcatcctcttcccaatgttgcgatgagccaaaatcttcataggatggaaactag---------tgttgtctccatgtgcttttgaggttattgagcat 16988199  T
Q  110 tcatccaatacatcatcaaggacataaacagcatcacgcagtttctgcagccagtctttcacaacatggcttgtaatttgctgctcttcagcatctttga 209  Q
    |||||||||| ||||||||| |||||| ||||||||  ||||||||||||||| | ||||||||||| |||||| ||||||| || || ||||||||| |    
T  16988200 tcatccaatatatcatcaagtacataagcagcatcagacagtttctgcagccattgtttcacaacattgcttgttatttgcttcttttgagcatctttta 16988299  T
Q  210 ggacagcacgaattg 224  Q
    | |||||||| ||||    
T  16988300 gtacagcacggattg 16988314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 9 - 223
Target Start/End: Original strand, 16788616 - 16788817
Alignment:
Q  9 ccttcatcctctttccaatgttgcgacgagccaaaatcttcagaggttgaaaacgggggatcctcttgttgtcgccatgtgcttttaaggttattgaaca 108  Q
    |||||||||||||||||| ||  ||  ||||||||||||||  |||  | ||||||| ||| | ||||||||| |||||||||||| | |||||||||||    
T  16788616 ccttcatcctctttccaacgtcacgctgagccaaaatcttcttaggaaggaaacgggtgatgcacttgttgtctccatgtgcttttgatgttattgaaca 16788715  T
Q  109 ttcatccaatacatcatcaaggacataaacagcatcacgcagtttctgcagccagtctttcacaacatggcttgtaatttgctgctcttcagcatctttg 208  Q
    ||| ||||||| ||||||||| |||| | ||||||             ||||||||||||||||||||| ||||| ||||||| ||||||||||||||||    
T  16788716 ttcgtccaataaatcatcaagaacatgagcagcat-------------cagccagtctttcacaacatgacttgttatttgcttctcttcagcatctttg 16788802  T
Q  209 aggacagcacgaatt 223  Q
    |||||| ||||||||    
T  16788803 aggacaacacgaatt 16788817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 7 - 119
Target Start/End: Complemental strand, 18805702 - 18805590
Alignment:
Q  7 ctccttcatcctctttccaatgttgcgacgagccaaaatcttcagaggttgaaaacgggggatcctcttgttgtcgccatgtgcttttaaggttattgaa 106  Q
    ||||||||||||||||||||| |  ||||||||||||||||||  ||| || ||||||| ||||| ||||||||| |||||||||||| | ||||||| |    
T  18805702 ctccttcatcctctttccaatatcccgacgagccaaaatcttcttaggatggaaacgggtgatccacttgttgtctccatgtgcttttgatgttattgta 18805603  T
Q  107 cattcatccaata 119  Q
    || ||||||||||    
T  18805602 caatcatccaata 18805590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 5 - 219
Target Start/End: Original strand, 9151 - 9365
Alignment:
Q  5 atctccttcatcctctttccaatgttgcgacgagccaaaatcttcagaggttgaaaacgggggatcctcttgttgtcgccatgtgcttttaaggttattg 104  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| ||| || ||||| | ||||| ||||||||  ||||||||||||||||||||||    
T  9151 atctccttcatcctctttccaatgttgcgacgaaccaaaatcttcataggatggaaacgagtgatccgcttgttgttaccatgtgcttttaaggttattg 9250  T
Q  105 aacattcatccaatacatcatcaaggacataaacagcatcacgcagtttctgcagccagtctttcacaacatggcttgtaatttgctgctcttcagcatc 204  Q
    ||||||||||||||| ||||||||| |||||| ||||||||||||||| ||| ||||| ||||| ||| ||| | |||| ||||||| || |||||||||    
T  9251 aacattcatccaatatatcatcaagcacataagcagcatcacgcagttgctgtagccactctttgacagcatcgtttgttatttgcttcttttcagcatc 9350  T
Q  205 tttgaggacagcacg 219  Q
    ||| |||||||||||    
T  9351 ttttaggacagcacg 9365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 7 - 219
Target Start/End: Original strand, 13501 - 13713
Alignment:
Q  7 ctccttcatcctctttccaatgttgcgacgagccaaaatcttcagaggttgaaaacgggggatcctcttgttgtcgccatgtgcttttaaggttattgaa 106  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| || ||||| | ||||| ||||||||||||||||||| ||||||||||||||    
T  13501 ctccttcatcctctttccaatgttgcgacgagccaaaatcttcataggatggaaacgagtgatccgcttgttgtcgccatgtgctcttaaggttattgaa 13600  T
Q  107 cattcatccaatacatcatcaaggacataaacagcatcacgcagtttctgcagccagtctttcacaacatggcttgtaatttgctgctcttcagcatctt 206  Q
    ||||||||||||| ||||||||  |||||| ||||||||  ||||| ||| ||||| ||||| ||| ||| | |||| ||||||| || ||| |||||||    
T  13601 cattcatccaatatatcatcaatcacataagcagcatcaatcagttgctgtagccactctttgacagcatcgtttgttatttgcttcttttctgcatctt 13700  T
Q  207 tgaggacagcacg 219  Q
    | |||||||||||    
T  13701 ttaggacagcacg 13713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0511 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 7 - 225
Target Start/End: Original strand, 10008 - 10226
Alignment:
Q  7 ctccttcatcctctttccaatgttgcgacgagccaaaatcttcagaggttgaaaacgggggatcctcttgttgtcgccatgtgcttttaaggttattgaa 106  Q
    ||||||||||||||||||||| |  | ||||||||||||||||  ||| |||||||||| ||||| ||||||||| |||||||||||| | ||||||| |    
T  10008 ctccttcatcctctttccaatatgccaacgagccaaaatcttcttaggatgaaaacgggtgatccacttgttgtctccatgtgcttttgatgttattgta 10107  T
Q  107 cattcatccaatacatcatcaaggacataaacagcatcacgcagtttctgcagccagtctttcacaacatggcttgtaatttgctgctcttcagcatctt 206  Q
    || |||||||||| ||||||||| |||||  || |||||   || ||||||||||| |||||||||||| ||||||| ||||||| |||||| |||||||    
T  10108 caatcatccaatatatcatcaagaacataggcaacatcagttagcttctgcagccaatctttcacaacacggcttgttatttgcttctcttcggcatctt 10207  T
Q  207 tgaggacagcacgaattgc 225  Q
      |||||||||||||||||    
T  10208 gaaggacagcacgaattgc 10226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 7 - 225
Target Start/End: Original strand, 5328 - 5546
Alignment:
Q  7 ctccttcatcctctttccaatgttgcgacgagccaaaatcttcagaggttgaaaacgggggatcctcttgttgtcgccatgtgcttttaaggttattgaa 106  Q
    ||||||||||||||||||||| |  | ||||||||||||| ||  ||| || ||||||| ||||| ||||||||| |||||||||||| |  |||||| |    
T  5328 ctccttcatcctctttccaatatccctacgagccaaaatcatcttaggatggaaacgggtgatccacttgttgtctccatgtgcttttgattttattgta 5427  T
Q  107 cattcatccaatacatcatcaaggacataaacagcatcacgcagtttctgcagccagtctttcacaacatggcttgtaatttgctgctcttcagcatctt 206  Q
    || |||||||||| ||| ||||| |||||| || |||||  ||| ||||||||||| |||||||||||| ||||||| ||||||| ||||||||||||||    
T  5428 caatcatccaatatatcgtcaagaacataagcaacatcagtcagcttctgcagccaatctttcacaacacggcttgttatttgcttctcttcagcatctt 5527  T
Q  207 tgaggacagcacgaattgc 225  Q
     ||||||||||||||||||    
T  5528 ggaggacagcacgaattgc 5546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 7 - 219
Target Start/End: Original strand, 38136 - 38348
Alignment:
Q  7 ctccttcatcctctttccaatgttgcgacgagccaaaatcttcagaggttgaaaacgggggatcctcttgttgtcgccatgtgcttttaaggttattgaa 106  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||| || ||||  | ||| | ||||| ||| || |||| ||||||||||||||||    
T  38136 ctccttcatcctctttccaatgttgcgacaagccaaaatcttcacaggatggaaactagtgatgcacttgtcgtctccgtgtggttttaaggttattgaa 38235  T
Q  107 cattcatccaatacatcatcaaggacataaacagcatcacgcagtttctgcagccagtctttcacaacatggcttgtaatttgctgctcttcagcatctt 206  Q
    ||||||||||||| ||||||||| |||||| ||| |||||  |||| ||| ||||| ||||||||  ||| | |||| |||||||  | |||||||||||    
T  38236 cattcatccaatatatcatcaagtacataagcagaatcaccgagttgctgtagccactctttcacggcatcgtttgttatttgctttttttcagcatctt 38335  T
Q  207 tgaggacagcacg 219  Q
    | |||||||||||    
T  38336 ttaggacagcacg 38348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 152 - 226
Target Start/End: Original strand, 13378891 - 13378965
Alignment:
Q  152 ttctgcagccagtctttcacaacatggcttgtaatttgctgctcttcagcatctttgaggacagcacgaattgca 226  Q
    ||||||||||| ||||| ||| |||| ||||| ||||||| |||||||||||||||||||||||| |||||||||    
T  13378891 ttctgcagccaatcttttacagcatgacttgttatttgcttctcttcagcatctttgaggacagcccgaattgca 13378965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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