View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11821_high_34 (Length: 241)
Name: NF11821_high_34
Description: NF11821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11821_high_34 |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 40227175 - 40227431
Alignment:
| Q |
1 |
tgagtatgagagagaaagttgtcctaaaatcgatttagaaatattatttctctcaaaagtatatgaatta------------------cgctattgactt |
82 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| | |
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| T |
40227175 |
tgagtatgagagagaaagttgtcctaaaatcgatgtagaaatattatttctctcaaaagtatatgaattattatattcggctcatttacgctattgacct |
40227274 |
T |
|
| Q |
83 |
tgatgcctcacttcaatacggttttttccctgtaattacttttgcaacatttgtgcggatagatgataagatattgacaactgaaaaagaaagcgagact |
182 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40227275 |
tgatgcctcacttcaatacggttttttccctgtaattacttttgcaacatttgtgcagatagatgataagatattgacaactgaaaaagaaagcgagact |
40227374 |
T |
|
| Q |
183 |
aagaataaagagtgatcgacataacacaattacaatttacatagttcttctctctcg |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
40227375 |
aagaataaagagtgatcgacataacacaattacaatttacatagtttttttctctcg |
40227431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 2323355 - 2323303
Alignment:
| Q |
1 |
tgagtatgagagagaaagttgtcctaaaatcgatttagaaatattatttctct |
53 |
Q |
| |
|
||||||||||||||||||||||| |||||| | | || |||||| |||||||| |
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| T |
2323355 |
tgagtatgagagagaaagttgtcataaaattgttgtacaaatatcatttctct |
2323303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 47078259 - 47078311
Alignment:
| Q |
1 |
tgagtatgagagagaaagttgtcctaaaatcgatttagaaatattatttctct |
53 |
Q |
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||||||||||||||||||||||| |||||| ||| | |||||| |||||||| |
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| T |
47078259 |
tgagtatgagagagaaagttgtcataaaatagatgttcaaatatcatttctct |
47078311 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 15141524 - 15141472
Alignment:
| Q |
1 |
tgagtatgagagagaaagttgtcctaaaatcgatttagaaatattatttctct |
53 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||| || |||||| |||||||| |
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|
| T |
15141524 |
tgagtatgagagagaaagttgtcataaaatagatgtacaaatatcatttctct |
15141472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 38939198 - 38939250
Alignment:
| Q |
1 |
tgagtatgagagagaaagttgtcctaaaatcgatttagaaatattatttctct |
53 |
Q |
| |
|
|||||||||||||||||||||| | ||||| | | ||||||||| |||||||| |
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|
| T |
38939198 |
tgagtatgagagagaaagttgtacaaaaatagttgtagaaatatcatttctct |
38939250 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 4511876 - 4511824
Alignment:
| Q |
1 |
tgagtatgagagagaaagttgtcctaaaatcgatttagaaatattatttctct |
53 |
Q |
| |
|
||||||||||||||||||||||| |||||| | | || |||||| |||||||| |
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|
| T |
4511876 |
tgagtatgagagagaaagttgtcataaaatggttatacaaatatcatttctct |
4511824 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 30196776 - 30196724
Alignment:
| Q |
1 |
tgagtatgagagagaaagttgtcctaaaatcgatt-tagaaatattatttctc |
52 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||| ||||||||| ||||||| |
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|
| T |
30196776 |
tgagtatgagagagaaagttgtcaaaaaattgattgtagaaatatcatttctc |
30196724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 50781578 - 50781630
Alignment:
| Q |
1 |
tgagtatgagagagaaagttgtcctaaaatcgatttagaaatattatttctct |
53 |
Q |
| |
|
||||||||||||||||||||||| |||||| ||| | |||||| |||||||| |
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| T |
50781578 |
tgagtatgagagagaaagttgtcataaaatggatgttcaaatatcatttctct |
50781630 |
T |
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