View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11821_high_36 (Length: 239)

Name: NF11821_high_36
Description: NF11821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11821_high_36
NF11821_high_36
[»] chr8 (35 HSPs)
chr8 (105-222)||(2067830-2067947)
chr8 (106-208)||(24732079-24732181)
chr8 (105-204)||(7612628-7612726)
chr8 (117-212)||(7129419-7129519)
chr8 (120-208)||(27109739-27109827)
chr8 (134-210)||(1774007-1774083)
chr8 (114-174)||(2812915-2812975)
chr8 (1-40)||(2803348-2803387)
chr8 (1-40)||(16208953-16208992)
chr8 (1-40)||(34168316-34168355)
chr8 (1-40)||(36915370-36915409)
chr8 (3-40)||(8382588-8382625)
chr8 (112-208)||(32326644-32326740)
chr8 (112-208)||(36915502-36915598)
chr8 (1-40)||(2067726-2067764)
chr8 (1-40)||(7129304-7129343)
chr8 (3-34)||(7612503-7612534)
chr8 (1-40)||(22601139-22601178)
chr8 (1-40)||(32326836-32326875)
chr8 (1-40)||(34461695-34461734)
chr8 (105-208)||(38328974-38329076)
chr8 (105-167)||(6839337-6839399)
chr8 (6-40)||(8107270-8107304)
chr8 (120-186)||(11335980-11336046)
chr8 (1-39)||(27416504-27416542)
chr8 (118-208)||(32061378-32061468)
chr8 (112-178)||(32737903-32737968)
chr8 (3-40)||(1774170-1774207)
chr8 (3-40)||(3095614-3095651)
chr8 (3-40)||(11257547-11257584)
chr8 (145-206)||(11257709-11257770)
chr8 (3-40)||(32061534-32061571)
chr8 (3-40)||(38329140-38329177)
chr8 (115-167)||(5588428-5588480)
chr8 (116-208)||(9022537-9022629)
[»] chr5 (27 HSPs)
chr5 (105-208)||(4967410-4967513)
chr5 (105-219)||(31889850-31889964)
chr5 (105-208)||(14979970-14980073)
chr5 (105-186)||(4011601-4011682)
chr5 (105-208)||(12167529-12167632)
chr5 (120-208)||(15400318-15400406)
chr5 (1-40)||(41845392-41845431)
chr5 (105-172)||(17674331-17674398)
chr5 (1-40)||(27810350-27810389)
chr5 (141-208)||(31557259-31557326)
chr5 (1-40)||(33822613-33822652)
chr5 (1-40)||(36660431-36660470)
chr5 (3-40)||(7388291-7388328)
chr5 (3-40)||(34171170-34171207)
chr5 (108-208)||(36783489-36783589)
chr5 (1-40)||(166759-166798)
chr5 (1-40)||(793716-793755)
chr5 (1-40)||(14980149-14980188)
chr5 (105-208)||(27652238-27652341)
chr5 (1-40)||(31557445-31557484)
chr5 (1-40)||(42329656-42329695)
chr5 (105-155)||(43257832-43257882)
chr5 (3-40)||(15400177-15400214)
chr5 (3-40)||(33585085-33585122)
chr5 (112-161)||(33741764-33741813)
chr5 (112-208)||(166568-166664)
chr5 (3-39)||(12167693-12167729)
[»] chr2 (26 HSPs)
chr2 (105-200)||(4840654-4840749)
chr2 (105-208)||(40410573-40410676)
chr2 (105-208)||(1298699-1298802)
chr2 (105-212)||(4766132-4766234)
chr2 (105-156)||(14378219-14378270)
chr2 (105-222)||(24775319-24775436)
chr2 (105-208)||(40987201-40987304)
chr2 (1-40)||(33093371-33093410)
chr2 (1-40)||(34225776-34225815)
chr2 (105-167)||(37106994-37107056)
chr2 (3-40)||(14378334-14378371)
chr2 (3-40)||(24775194-24775231)
chr2 (105-200)||(43460903-43460995)
chr2 (158-217)||(4051675-4051734)
chr2 (1-40)||(4536577-4536616)
chr2 (1-40)||(4766298-4766337)
chr2 (105-208)||(7743531-7743634)
chr2 (1-40)||(29795300-29795339)
chr2 (3-34)||(45372648-45372679)
chr2 (2-40)||(4840837-4840875)
chr2 (105-155)||(36360347-36360397)
chr2 (3-40)||(7743406-7743443)
chr2 (3-40)||(18374874-18374911)
chr2 (3-40)||(40987381-40987418)
chr2 (118-167)||(44228609-44228658)
chr2 (3-40)||(45148062-45148099)
[»] chr6 (18 HSPs)
chr6 (105-207)||(32258843-32258945)
chr6 (105-216)||(26669009-26669120)
chr6 (105-208)||(1924594-1924696)
chr6 (112-208)||(23936502-23936598)
chr6 (112-212)||(34439323-34439423)
chr6 (116-208)||(19689767-19689858)
chr6 (105-198)||(4131877-4131970)
chr6 (115-208)||(29915683-29915776)
chr6 (1-40)||(3015919-3015958)
chr6 (1-40)||(32258725-32258764)
chr6 (105-155)||(12828653-12828703)
chr6 (1-40)||(4123965-4124004)
chr6 (1-40)||(29915544-29915583)
chr6 (1-40)||(29927210-29927249)
chr6 (1-40)||(31275752-31275791)
chr6 (3-40)||(1924774-1924811)
chr6 (3-40)||(4132085-4132122)
chr6 (131-171)||(10494683-10494723)
[»] chr4 (33 HSPs)
chr4 (105-205)||(31817124-31817224)
chr4 (105-208)||(56422921-56423024)
chr4 (105-206)||(52732718-52732819)
chr4 (105-205)||(54512150-54512250)
chr4 (105-208)||(44855371-44855474)
chr4 (105-209)||(21045260-21045362)
chr4 (105-208)||(50072378-50072484)
chr4 (105-178)||(51930703-51930776)
chr4 (105-208)||(43421046-43421149)
chr4 (105-167)||(32140949-32141011)
chr4 (105-167)||(45903379-45903441)
chr4 (105-155)||(15501129-15501179)
chr4 (105-155)||(34360132-34360182)
chr4 (1-40)||(21045156-21045195)
chr4 (1-40)||(45903518-45903557)
chr4 (1-40)||(50072281-50072320)
chr4 (105-179)||(19849211-19849285)
chr4 (105-155)||(37445787-37445837)
chr4 (3-40)||(31941560-31941597)
chr4 (3-40)||(45520570-45520607)
chr4 (3-40)||(47321146-47321183)
chr4 (1-40)||(1868211-1868250)
chr4 (1-40)||(19282523-19282562)
chr4 (1-40)||(29840075-29840114)
chr4 (5-40)||(30492732-30492767)
chr4 (105-208)||(34096143-34096246)
chr4 (1-40)||(51930600-51930639)
chr4 (1-40)||(56556366-56556405)
chr4 (105-167)||(45520421-45520483)
chr4 (3-40)||(15501258-15501295)
chr4 (3-40)||(52732601-52732638)
chr4 (3-31)||(3093355-3093383)
chr4 (143-179)||(51906291-51906327)
[»] chr3 (47 HSPs)
chr3 (105-208)||(26965427-26965530)
chr3 (105-208)||(790203-790306)
chr3 (105-208)||(53716134-53716238)
chr3 (105-194)||(34059996-34060085)
chr3 (105-187)||(37225535-37225617)
chr3 (105-167)||(647552-647614)
chr3 (105-186)||(19552662-19552744)
chr3 (105-171)||(46362966-46363032)
chr3 (116-208)||(42857010-42857102)
chr3 (112-207)||(43580617-43580712)
chr3 (105-155)||(9167661-9167711)
chr3 (105-167)||(38457591-38457653)
chr3 (105-218)||(2567921-2568034)
chr3 (105-208)||(25061824-25061927)
chr3 (1-40)||(25722571-25722610)
chr3 (1-40)||(26965609-26965648)
chr3 (1-40)||(44854319-44854358)
chr3 (1-40)||(46363121-46363160)
chr3 (109-219)||(6084735-6084845)
chr3 (105-167)||(35239492-35239554)
chr3 (3-40)||(1341030-1341067)
chr3 (3-40)||(19552546-19552583)
chr3 (3-40)||(45095559-45095596)
chr3 (1-37)||(2988722-2988758)
chr3 (4-40)||(32304015-32304051)
chr3 (1-40)||(83300-83339)
chr3 (132-171)||(5244742-5244781)
chr3 (105-204)||(27483116-27483215)
chr3 (1-40)||(27483294-27483333)
chr3 (105-208)||(31290893-31290996)
chr3 (1-40)||(37225705-37225744)
chr3 (1-40)||(43580479-43580518)
chr3 (1-40)||(43600300-43600339)
chr3 (105-208)||(44648329-44648432)
chr3 (105-171)||(36771532-36771598)
chr3 (132-206)||(50420380-50420454)
chr3 (3-40)||(2568113-2568150)
chr3 (3-40)||(3000758-3000795)
chr3 (3-40)||(34059882-34059919)
chr3 (3-40)||(36771677-36771714)
chr3 (105-174)||(38165614-38165683)
chr3 (3-40)||(42007171-42007208)
chr3 (158-215)||(48901890-48901947)
chr3 (114-174)||(4392035-4392095)
chr3 (115-167)||(22731072-22731124)
chr3 (175-219)||(30706660-30706704)
chr3 (3-39)||(44648512-44648548)
[»] scaffold0119 (1 HSPs)
scaffold0119 (105-216)||(1673-1784)
[»] chr1 (35 HSPs)
chr1 (105-200)||(52403606-52403701)
chr1 (112-208)||(1429004-1429100)
chr1 (108-208)||(10690874-10690974)
chr1 (105-208)||(50158237-50158340)
chr1 (106-176)||(11650189-11650259)
chr1 (116-204)||(1430459-1430547)
chr1 (105-167)||(24040984-24041046)
chr1 (105-179)||(43929814-43929888)
chr1 (105-167)||(50349817-50349879)
chr1 (105-205)||(84440-84540)
chr1 (115-167)||(6332307-6332359)
chr1 (1-40)||(11650061-11650100)
chr1 (1-40)||(24041111-24041150)
chr1 (1-40)||(40061007-40061046)
chr1 (1-40)||(50158417-50158456)
chr1 (105-151)||(28751384-28751430)
chr1 (105-171)||(40060862-40060928)
chr1 (120-170)||(43105559-43105609)
chr1 (1-34)||(15647177-15647210)
chr1 (105-213)||(30006260-30006368)
chr1 (1-40)||(5317687-5317726)
chr1 (1-40)||(11134571-11134610)
chr1 (1-40)||(38132278-38132317)
chr1 (1-40)||(43755056-43755095)
chr1 (1-40)||(48259964-48260003)
chr1 (158-212)||(34032004-34032058)
chr1 (1-39)||(45377261-45377299)
chr1 (3-40)||(84604-84641)
chr1 (3-40)||(2245791-2245828)
chr1 (1-34)||(22664942-22664975)
chr1 (1-34)||(26252121-26252154)
chr1 (158-215)||(34047154-34047211)
chr1 (1-40)||(28751518-28751558)
chr1 (3-39)||(43105692-43105728)
chr1 (4-40)||(52403482-52403518)
[»] chr7 (27 HSPs)
chr7 (105-186)||(41905876-41905957)
chr7 (105-172)||(28044096-28044163)
chr7 (105-165)||(18886776-18886836)
chr7 (105-171)||(32275326-32275392)
chr7 (132-208)||(34002051-34002127)
chr7 (1-40)||(5723007-5723046)
chr7 (1-40)||(18733457-18733496)
chr7 (1-40)||(22597234-22597273)
chr7 (1-40)||(36447181-36447220)
chr7 (105-204)||(36447534-36447633)
chr7 (1-40)||(40298851-40298890)
chr7 (105-179)||(1103615-1103689)
chr7 (105-179)||(42010523-42010597)
chr7 (3-40)||(3681033-3681070)
chr7 (3-40)||(28044242-28044279)
chr7 (105-165)||(34733440-34733500)
chr7 (120-171)||(32873122-32873173)
chr7 (1-40)||(36836063-36836102)
chr7 (1-40)||(42044090-42044129)
chr7 (105-167)||(3680883-3680945)
chr7 (2-40)||(22627457-22627495)
chr7 (105-155)||(33056256-33056306)
chr7 (105-155)||(48838652-48838702)
chr7 (3-40)||(18886675-18886712)
chr7 (3-40)||(19920382-19920419)
chr7 (3-40)||(31416862-31416899)
chr7 (3-40)||(32873274-32873311)
[»] scaffold0580 (2 HSPs)
scaffold0580 (105-208)||(1704-1807)
scaffold0580 (105-208)||(9443-9546)
[»] scaffold0194 (2 HSPs)
scaffold0194 (105-206)||(8279-8380)
scaffold0194 (1-40)||(8161-8200)
[»] scaffold0238 (1 HSPs)
scaffold0238 (105-171)||(15996-16062)
[»] scaffold0047 (1 HSPs)
scaffold0047 (1-40)||(70565-70604)
[»] scaffold0886 (1 HSPs)
scaffold0886 (105-171)||(4064-4130)
[»] scaffold0072 (1 HSPs)
scaffold0072 (105-167)||(12042-12103)
[»] scaffold0189 (1 HSPs)
scaffold0189 (3-40)||(13169-13206)


Alignment Details
Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 35)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 105 - 222
Target Start/End: Original strand, 2067830 - 2067947
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaa 204  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||| | | ||||||||||||||||| ||||||||||||||    
T  2067830 ataaagtaagggcagtttaataaaagcgttatatcaaatgattatttcattccatttcttaatctatgtgtcaaagcctaaagcgacactcattttaaaa 2067929  T
Q  205 cggaaggaatactatata 222  Q
    | || ||| |||||||||    
T  2067930 ctgagggagtactatata 2067947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 106 - 208
Target Start/End: Original strand, 24732079 - 24732181
Alignment:
Q  106 taaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaac 205  Q
    ||||||| ||||||||||||||||  |||||||| ||||| ||||||||||||||||||||| |||||||||||| ||| |||| |||||||||||||||    
T  24732079 taaagtaggggcagtttagtaaaagtgttatatccaatgactatttcattcaatttcttaatctgtatgtcaaagtctacagcgacactcattttaaaac 24732178  T
Q  206 gga 208  Q
    |||    
T  24732179 gga 24732181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 105 - 204
Target Start/End: Original strand, 7612628 - 7612726
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaa 204  Q
    ||||||||||||||||||||||||  ||||||||| |||||||||||||||| |||||||||| ||| || ||||  |||||||  ||||||||||||||    
T  7612628 ataaagtaagggcagtttagtaaag-cgttatatccaatgattatttcattctatttcttaatctgtgtgccaaaatctaaagcaacactcattttaaaa 7612726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 117 - 212
Target Start/End: Original strand, 7129419 - 7129519
Alignment:
Q  117 cagtttagtaaaaacgttatatcaaatgattat-----ttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaacggaagg 211  Q
    ||||||||||||| ||||||||  |||||||||     ||||||| |||||||||| | |||||||||||||  |||| |||||||||||||||||||||    
T  7129419 cagtttagtaaaagcgttatattcaatgattatactatttcattccatttcttaatctatatgtcaaagcctgcagcgacactcattttaaaacggaagg 7129518  T
Q  212 a 212  Q
    |    
T  7129519 a 7129519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 120 - 208
Target Start/End: Complemental strand, 27109827 - 27109739
Alignment:
Q  120 tttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaacgga 208  Q
    ||||||||||  |||||||| |||||||||||||||| |||||||||||||| || |||  |||||| || |||||||||| |||||||    
T  27109827 tttagtaaaagtgttatatctaatgattatttcattctatttcttaatatgtgtgccaacacctaaaacgacactcattttgaaacgga 27109739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 210
Target Start/End: Complemental strand, 1774083 - 1774007
Alignment:
Q  134 tatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaacggaag 210  Q
    |||||||||||||||| |||||| |||||||||| |||  | |||||||||||| | |||||||||| |||||||||    
T  1774083 tatatcaaatgattatatcattctatttcttaatctgtgcgccaaagcctaaagtgacactcattttgaaacggaag 1774007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 2812915 - 2812975
Alignment:
Q  114 gggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatg 174  Q
    ||||||||||||||||  ||||| || |||||||||||||||||||| |||||| ||||||    
T  2812915 gggcagtttagtaaaagtgttatgtctaatgattatttcattcaattacttaatttgtatg 2812975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 2803387 - 2803348
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  2803387 tcaaaataaatgtcactttacattttcaatacaattttaa 2803348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 16208953 - 16208992
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  16208953 tcaaaatgaatgtcactttacattttcaatacaactttaa 16208992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 34168355 - 34168316
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  34168355 tcaaaatgaatgtcactttacattttcaatacaactttaa 34168316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 36915370 - 36915409
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  36915370 tcaaaatgaatgtcactttacattttcaatacaactttaa 36915409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 8382625 - 8382588
Alignment:
Q  3 aaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    |||||||||||||||||||||||||||||||| |||||    
T  8382625 aaaatgaatgtcactttacattttcaatacaactttaa 8382588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 208
Target Start/End: Complemental strand, 32326740 - 32326644
Alignment:
Q  112 aagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaacgga 208  Q
    ||||||||||||||||||  ||||  || |||||||||||||||  ||| |||||| ||| ||  |  | |||||||| ||||||||||||||||||    
T  32326740 aagggcagtttagtaaaagtgttacgtctaatgattatttcatttcattccttaatctgtgtgcaattgactaaagcgacactcattttaaaacgga 32326644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 208
Target Start/End: Original strand, 36915502 - 36915598
Alignment:
Q  112 aagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaacgga 208  Q
    ||||||| |||||||||||  |||| || |||||||||||||||| ||| |||||| ||||||  |  |  |||| || ||||||||||||||||||    
T  36915502 aagggcaatttagtaaaaatattatgtctaatgattatttcattccattccttaatctgtatgcaattggttaaaacgacactcattttaaaacgga 36915598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 2067726 - 2067764
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  2067726 tcaaaatgaatgtca-tttacattttcaatacaattttaa 2067764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 7129304 - 7129343
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    |||||||||||||||||||||||||||||| ||| |||||    
T  7129304 tcaaaatgaatgtcactttacattttcaatgcaactttaa 7129343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 34
Target Start/End: Original strand, 7612503 - 7612534
Alignment:
Q  3 aaaatgaatgtcactttacattttcaatacaa 34  Q
    ||||||||||||||||||||||||||||||||    
T  7612503 aaaatgaatgtcactttacattttcaatacaa 7612534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 22601139 - 22601178
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    ||||||||||||||||||||||||| |||||||| |||||    
T  22601139 tcaaaatgaatgtcactttacatttccaatacaactttaa 22601178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 32326875 - 32326836
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    ||||||| |||||||||||||||||||||||||| |||||    
T  32326875 tcaaaataaatgtcactttacattttcaatacaactttaa 32326836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 34461734 - 34461695
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    ||||||||||||||||||||||||| |||||||| |||||    
T  34461734 tcaaaatgaatgtcactttacatttccaatacaactttaa 34461695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 208
Target Start/End: Complemental strand, 38329076 - 38328974
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaa 204  Q
    ||||||||||| |||||||||||||  ||||| || |||||||||||||||| ||| |||||| ||| ||  |  | ||||||||  ||||||||| |||    
T  38329076 ataaagtaagg-cagtttagtaaaagtgttatgtctaatgattatttcattccattccttaatctgtgtgcaattgactaaagcgaaactcattttgaaa 38328978  T
Q  205 cgga 208  Q
    ||||    
T  38328977 cgga 38328974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 167
Target Start/End: Original strand, 6839337 - 6839399
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaat 167  Q
    ||||||||| |||| ||||||||||  ||||| || |||||||||||||||| |||| |||||    
T  6839337 ataaagtaaaggcaatttagtaaaagtgttatgtctaatgattatttcattccattttttaat 6839399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 8107304 - 8107270
Alignment:
Q  6 atgaatgtcactttacattttcaatacaattttaa 40  Q
    ||||||||||||||||||||||||||||| |||||    
T  8107304 atgaatgtcactttacattttcaatacaactttaa 8107270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 186
Target Start/End: Complemental strand, 11336046 - 11335980
Alignment:
Q  120 tttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaa 186  Q
    ||||||||||  |||||||| |||| ||| ||||||  |||||||||| ||| ||||||||||||||    
T  11336046 tttagtaaaagtgttatatcgaatggttacttcattacatttcttaatctgtgtgtcaaagcctaaa 11335980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 27416504 - 27416542
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaatttta 39  Q
    ||||||||||||||||||||||||| |||||||| ||||    
T  27416504 tcaaaatgaatgtcactttacatttccaatacaacttta 27416542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 208
Target Start/End: Complemental strand, 32061468 - 32061378
Alignment:
Q  118 agtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaacgga 208  Q
    ||||||||||||  ||||| ||  ||||||||||| |||||||||||||||||| || ||||  || || || |||||||| | |||||||    
T  32061468 agtttagtaaaagtgttatgtctgatgattatttcgttcaatttcttaatatgtgtgccaaaaacttaaacgacactcattgtgaaacgga 32061378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 178
Target Start/End: Original strand, 32737903 - 32737968
Alignment:
Q  112 aagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaa 178  Q
    ||||||||||||  ||||  |||||||| |||||| |||||||||||||||||||| ||||| ||||    
T  32737903 aagggcagtttaacaaaagtgttatatctaatgat-atttcattcaatttcttaatctgtatatcaa 32737968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 1774207 - 1774170
Alignment:
Q  3 aaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    ||||||||||||| |||||||||||||||||| |||||    
T  1774207 aaaatgaatgtcaatttacattttcaatacaactttaa 1774170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 3095651 - 3095614
Alignment:
Q  3 aaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  3095651 aaaatgaatgttactttacattttcaatacaactttaa 3095614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 11257547 - 11257584
Alignment:
Q  3 aaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  11257547 aaaatgaatgtcactttacatttttaatacaactttaa 11257584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 206
Target Start/End: Original strand, 11257709 - 11257770
Alignment:
Q  145 attatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaacg 206  Q
    |||||||||||| |||||||||| ||| |||||||  || || ||||||||||| |||||||    
T  11257709 attatttcattccatttcttaatttgtgtgtcaaaatcttaaacggcactcattgtaaaacg 11257770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 32061571 - 32061534
Alignment:
Q  3 aaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    ||||||||||||||||||||||||| |||||| |||||    
T  32061571 aaaatgaatgtcactttacattttctatacaaatttaa 32061534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 38329177 - 38329140
Alignment:
Q  3 aaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  38329177 aaaatgaatgtcactttatattttcaatacaactttaa 38329140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 167
Target Start/End: Complemental strand, 5588480 - 5588428
Alignment:
Q  115 ggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaat 167  Q
    |||||||||||||||| ||||| |  |||||||||||||||  ||||||||||    
T  5588480 ggcagtttagtaaaaatgttatgtttaatgattatttcattatatttcttaat 5588428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 208
Target Start/End: Original strand, 9022537 - 9022629
Alignment:
Q  116 gcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaacgga 208  Q
    ||||||||||||||  ||||| || |||||||| ||||||| |||| ||||| ||| ||  |  | ||||| || ||||||||||||||||||    
T  9022537 gcagtttagtaaaagtgttatgtctaatgattaattcattccattttttaatctgtgtgcaattggctaaaacgacactcattttaaaacgga 9022629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 105 - 208
Target Start/End: Complemental strand, 4967513 - 4967410
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaa 204  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||| ||| ||||||||||||||||| |||||||||| |||    
T  4967513 ataaagtaagggcagtttagtaaaagcgttatatccaatgattatttcattccatttcttaatctgtgtgtcaaagcctaaagcgacactcattttgaaa 4967414  T
Q  205 cgga 208  Q
    ||||    
T  4967413 cgga 4967410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 105 - 219
Target Start/End: Original strand, 31889850 - 31889964
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaa 204  Q
    ||||||||||||||||||||| ||||||||||||  ||| |||||||||||| |||||||||| ||| ||||||||||||||||  |||||||||| |||    
T  31889850 ataaagtaagggcagtttagtgaaaacgttatattcaataattatttcattccatttcttaatctgtgtgtcaaagcctaaagctacactcattttgaaa 31889949  T
Q  205 cggaaggaatactat 219  Q
    |||| ||| ||||||    
T  31889950 cggagggagtactat 31889964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 105 - 208
Target Start/End: Complemental strand, 14980073 - 14979970
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaa 204  Q
    |||||||||||||||||| ||||||  |||||||| |||||||||||||||| |||||||||| ||| || |||||||||||||| |||||||||| |||    
T  14980073 ataaagtaagggcagtttggtaaaagtgttatatccaatgattatttcattccatttcttaatctgtgtgccaaagcctaaagcgacactcattttgaaa 14979974  T
Q  205 cgga 208  Q
    ||||    
T  14979973 cgga 14979970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 105 - 186
Target Start/End: Complemental strand, 4011682 - 4011601
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaa 186  Q
    ||||| |||||||| ||||| |||||||||||||| ||||||||||| |||| |||||||||| | | ||||||||||||||    
T  4011682 ataaaataagggcattttagaaaaaacgttatatccaatgattatttgattccatttcttaatctatgtgtcaaagcctaaa 4011601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 105 - 208
Target Start/End: Complemental strand, 12167632 - 12167529
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaa 204  Q
    |||||||||||||||||||||||||  ||| | || ||||||||||||||||||||||||||| ||| ||  |    |||||||| |||||||||| |||    
T  12167632 ataaagtaagggcagtttagtaaaagtgttttgtctaatgattatttcattcaatttcttaatttgtgtgcaattagctaaagcgacactcattttgaaa 12167533  T
Q  205 cgga 208  Q
    ||||    
T  12167532 cgga 12167529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 208
Target Start/End: Original strand, 15400318 - 15400406
Alignment:
Q  120 tttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaacgga 208  Q
    ||||||||||  |||||||| ||| ||||||||||||||||| ||||| ||| || |||  |||||| || ||||||||||||||||||    
T  15400318 tttagtaaaagtgttatatctaataattatttcattcaattttttaatctgtgtgccaacacctaaaacgacactcattttaaaacgga 15400406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 41845431 - 41845392
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  41845431 tcaaaatgaatgtcactttacattttcaatacaattttaa 41845392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 172
Target Start/End: Original strand, 17674331 - 17674398
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgta 172  Q
    ||||||||||||||||||| |||||| ||||| |  |||||||||||||||  |||| ||||||||||    
T  17674331 ataaagtaagggcagtttaataaaaatgttatgtttaatgattatttcatttcattttttaatatgta 17674398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 27810350 - 27810389
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  27810350 tcaaaatgaatgtcactttacattttcaatacaactttaa 27810389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 208
Target Start/End: Complemental strand, 31557326 - 31557259
Alignment:
Q  141 aatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaacgga 208  Q
    |||||||||||||||| |||||||||||||| | ||||  |||||| || ||||| ||||||||||||    
T  31557326 aatgattatttcattctatttcttaatatgtgtatcaacacctaaaacgacactcgttttaaaacgga 31557259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 33822652 - 33822613
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  33822652 tcaaaatgaatgtcactttacattttcaatacaactttaa 33822613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 36660431 - 36660470
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  36660431 tcaaaatgaatgtcactttacattttcaatacaactttaa 36660470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 7388328 - 7388291
Alignment:
Q  3 aaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    |||||||||||||||||| |||||||||||||||||||    
T  7388328 aaaatgaatgtcactttatattttcaatacaattttaa 7388291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 34171170 - 34171207
Alignment:
Q  3 aaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    |||||||||||||||||||||||||||||||| |||||    
T  34171170 aaaatgaatgtcactttacattttcaatacaactttaa 34171207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 208
Target Start/End: Original strand, 36783489 - 36783589
Alignment:
Q  108 aagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaacgg 207  Q
    ||||||||||| ||||||||||| ||||| || |||||||||||||||  || ||||||| ||| ||  |  | ||||||||  ||||||||| ||||||    
T  36783489 aagtaagggcaatttagtaaaaatgttatgtctaatgattatttcatttcatctcttaatctgtgtgcaattggctaaagcgatactcattttgaaacgg 36783588  T
Q  208 a 208  Q
    |    
T  36783589 a 36783589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 166798 - 166759
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    ||||||||||||||||||||||||| |||||||| |||||    
T  166798 tcaaaatgaatgtcactttacatttccaatacaactttaa 166759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 793755 - 793716
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    ||||||||||||||||||||||||| |||||||| |||||    
T  793755 tcaaaatgaatgtcactttacatttccaatacaactttaa 793716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 14980188 - 14980149
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    ||||||||||||||||||||||||| |||||||| |||||    
T  14980188 tcaaaatgaatgtcactttacatttccaatacaactttaa 14980149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 208
Target Start/End: Complemental strand, 27652341 - 27652238
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaa 204  Q
    |||||||||||  | ||||||||||  |||||  ||  ||| ||||| |||| |||||||||| ||| ||| |  |||||||||| ||||||||||||||    
T  27652341 ataaagtaaggttattttagtaaaattgttatgacatttgactattttattccatttcttaatctgtgtgtaattgcctaaagcgacactcattttaaaa 27652242  T
Q  205 cgga 208  Q
    ||||    
T  27652241 cgga 27652238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 31557484 - 31557445
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    ||||||||||||||| |||||||||||||||||| |||||    
T  31557484 tcaaaatgaatgtcattttacattttcaatacaactttaa 31557445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 42329695 - 42329656
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    ||||||||||||||||||||||||| |||||||| |||||    
T  42329695 tcaaaatgaatgtcactttacatttccaatacaactttaa 42329656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 43257882 - 43257832
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcatt 155  Q
    |||||||||||||||||||||| ||  ||||| || |||||||||||||||    
T  43257882 ataaagtaagggcagtttagtataagtgttatgtctaatgattatttcatt 43257832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 15400177 - 15400214
Alignment:
Q  3 aaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  15400177 aaaatgaatgtcactttacatttccaatacaactttaa 15400214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 33585122 - 33585085
Alignment:
Q  3 aaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    |||||||| ||||||||||||||||||||||| |||||    
T  33585122 aaaatgaacgtcactttacattttcaatacaactttaa 33585085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 161
Target Start/End: Original strand, 33741764 - 33741813
Alignment:
Q  112 aagggcagtttagtaaaaacgttatatcaaatgattatttcattcaattt 161  Q
    ||||||| ||||||||||| | |||||| |||||||||||||||| ||||    
T  33741764 aagggcaatttagtaaaaatggtatatctaatgattatttcattccattt 33741813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 208
Target Start/End: Complemental strand, 166664 - 166568
Alignment:
Q  112 aagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaacgga 208  Q
    ||||||||||||||||||  ||||| || |||||||||||||||  ||| |||||| ||| ||  |  | |||| ||| |||||||||| |||||||    
T  166664 aagggcagtttagtaaaagtgttatttctaatgattatttcatttcattccttaatctgtgtgcaattggctaacgcgacactcattttgaaacgga 166568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 12167729 - 12167693
Alignment:
Q  3 aaaatgaatgtcactttacattttcaatacaatttta 39  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  12167729 aaaatgaatgtcactctacattttcaatacaacttta 12167693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 105 - 200
Target Start/End: Complemental strand, 4840749 - 4840654
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcatttt 200  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| || ||||||||||| || ||||||||||    
T  4840749 ataaagtaagggcagtttagtaaaaacgttatatccaatgattatttcattccatttcttaatatgtgtgccaaagcctaaaacgacactcatttt 4840654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 105 - 208
Target Start/End: Original strand, 40410573 - 40410676
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaa 204  Q
    ||||||||||||||||||| ||||| ||||||||| ||||||||| |||||| |||||||||| ||| || ||| |||||||||| |||| |||||||||    
T  40410573 ataaagtaagggcagtttaataaaagcgttatatccaatgattatgtcattccatttcttaatctgtgtgacaacgcctaaagcgacacttattttaaaa 40410672  T
Q  205 cgga 208  Q
    ||||    
T  40410673 cgga 40410676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 105 - 208
Target Start/End: Complemental strand, 1298802 - 1298699
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaa 204  Q
    |||||||||||||| |||||||||||||||||||  |||||||||||||||  |||||||||| | ||||  |||| |||||||| |||||||||| |||    
T  1298802 ataaagtaagggcaatttagtaaaaacgttatattcaatgattatttcattttatttcttaatctctatgctaaagtctaaagcgacactcattttgaaa 1298703  T
Q  205 cgga 208  Q
    ||||    
T  1298702 cgga 1298699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 105 - 212
Target Start/End: Complemental strand, 4766234 - 4766132
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaa 204  Q
    ||||||||| ||||||||||||| ||||||||||| |||||||||||||||     ||||||| ||| |  ||||| |||||||| || |||||||||||    
T  4766234 ataaagtaaaggcagtttagtaataacgttatatccaatgattatttcatt-----tcttaatctgtgtaccaaaggctaaagcgacattcattttaaaa 4766140  T
Q  205 cggaagga 212  Q
    ||||||||    
T  4766139 cggaagga 4766132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 105 - 156
Target Start/End: Complemental strand, 14378270 - 14378219
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattc 156  Q
    |||||||||||||||||||||||||  ||||||| |||||||||||||||||    
T  14378270 ataaagtaagggcagtttagtaaaagtgttatattaaatgattatttcattc 14378219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 222
Target Start/End: Original strand, 24775319 - 24775436
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaa 204  Q
    |||||||||| ||| ||||||||||  |||||||| |||||||||||||||||||  |||||| ||| ||  |  | ||||| || ||||||| ||||||    
T  24775319 ataaagtaagagcattttagtaaaagtgttatatctaatgattatttcattcaataccttaatttgtgtgcaattgactaaaacgacactcatcttaaaa 24775418  T
Q  205 cggaaggaatactatata 222  Q
    |||| ||| || ||||||    
T  24775419 cggatggagtagtatata 24775436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 105 - 208
Target Start/End: Complemental strand, 40987304 - 40987201
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaag-cctaaagcggcactcattttaaa 203  Q
    ||||||||||| || ||||||||||  ||||| || |||||||||||||||  ||| |||||||||| || ||| |  |||||||| |||||||||||||    
T  40987304 ataaagtaaggacaatttagtaaaagtgttatgtctaatgattatttcatttcattccttaatatgtgtg-caatgagctaaagcgacactcattttaaa 40987206  T
Q  204 acgga 208  Q
    |||||    
T  40987205 acgga 40987201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 33093371 - 33093410
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  33093371 tcaaaatgaatgtcactttacattttcaatacaactttaa 33093410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 34225776 - 34225815
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  34225776 tcaaaatgaatgtcactttacattttcaatacaactttaa 34225815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 105 - 167
Target Start/End: Original strand, 37106994 - 37107056
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaat 167  Q
    |||||||||||||| ||||||||||  ||| | |||||| |||||||||||| ||||||||||    
T  37106994 ataaagtaagggcaatttagtaaaagtgttgtgtcaaataattatttcattccatttcttaat 37107056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 14378371 - 14378334
Alignment:
Q  3 aaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    |||||||||||||||||||||||||||||||| |||||    
T  14378371 aaaatgaatgtcactttacattttcaatacaactttaa 14378334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 24775194 - 24775231
Alignment:
Q  3 aaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  24775194 aaaatgattgtcactttacattttcaatacaattttaa 24775231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 200
Target Start/End: Original strand, 43460903 - 43460995
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcatttt 200  Q
    |||||||||||||||||||||||||    | |||| |||||||||||||||| |||||||||   || || |||||| |||| || ||||||||||    
T  43460903 ataaagtaagggcagtttagtaaaa---gtgtatccaatgattatttcattccatttcttaaaccgtgtgccaaagcttaaaacgacactcatttt 43460995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 217
Target Start/End: Complemental strand, 4051734 - 4051675
Alignment:
Q  158 atttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaacggaaggaatact 217  Q
    |||||||| ||||| ||| ||  |||||| || |||||||||||||||||||||||||||    
T  4051734 atttcttactatgtgtgtaaacacctaaaacgacactcattttaaaacggaaggaatact 4051675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 4536577 - 4536616
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    ||||||||||||||||||||||||| |||||||| |||||    
T  4536577 tcaaaatgaatgtcactttacatttccaatacaactttaa 4536616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 4766337 - 4766298
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    ||||||||||||||| |||||||||||||||||| |||||    
T  4766337 tcaaaatgaatgtcaatttacattttcaatacaactttaa 4766298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 208
Target Start/End: Original strand, 7743531 - 7743634
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaa 204  Q
    ||||||||||||||  |||||||||  ||||||||  |||||||||||||| ||||  ||||| ||| ||  |  | |||||||| |||||||||| |||    
T  7743531 ataaagtaagggcaacttagtaaaagtgttatatctgatgattatttcatttaattctttaatctgtgtgaaattggctaaagcgacactcattttgaaa 7743630  T
Q  205 cgga 208  Q
    ||||    
T  7743631 cgga 7743634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 29795339 - 29795300
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    ||||||||||||||||||||||||| |||||||| |||||    
T  29795339 tcaaaatgaatgtcactttacatttccaatacaactttaa 29795300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 34
Target Start/End: Complemental strand, 45372679 - 45372648
Alignment:
Q  3 aaaatgaatgtcactttacattttcaatacaa 34  Q
    ||||||||||||||||||||||||||||||||    
T  45372679 aaaatgaatgtcactttacattttcaatacaa 45372648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 4840875 - 4840837
Alignment:
Q  2 caaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    |||||||||||||||||||||||| |||||||| |||||    
T  4840875 caaaatgaatgtcactttacatttccaatacaactttaa 4840837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 36360397 - 36360347
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcatt 155  Q
    ||||| |||||||||||||||||||  ||||| || |||||||||||||||    
T  36360397 ataaaataagggcagtttagtaaaagtgttatgtctaatgattatttcatt 36360347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 7743406 - 7743443
Alignment:
Q  3 aaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  7743406 aaaatgaatgtcactttacatttccaatacaactttaa 7743443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 18374911 - 18374874
Alignment:
Q  3 aaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    ||||||||||||||||||||||| ||||| ||||||||    
T  18374911 aaaatgaatgtcactttacatttccaatataattttaa 18374874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 40987418 - 40987381
Alignment:
Q  3 aaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    |||||||||||| ||||||||||||||||||| |||||    
T  40987418 aaaatgaatgtcgctttacattttcaatacaactttaa 40987381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 167
Target Start/End: Original strand, 44228609 - 44228658
Alignment:
Q  118 agtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaat 167  Q
    ||||||||||||  |||||||| |||||||||||||||| |||| |||||    
T  44228609 agtttagtaaaagtgttatatctaatgattatttcattccattttttaat 44228658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 45148099 - 45148062
Alignment:
Q  3 aaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    ||||||||||||||||||||||||||||| || |||||    
T  45148099 aaaatgaatgtcactttacattttcaataaaactttaa 45148062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 105 - 207
Target Start/End: Original strand, 32258843 - 32258945
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaa 204  Q
    |||||| |||||||||||||||||| ||||||||| ||||||||||||| || |||||||||| ||| ||||||||||||||||| ||||||||||||||    
T  32258843 ataaagcaagggcagtttagtaaaagcgttatatccaatgattatttcaatcgatttcttaatctgtgtgtcaaagcctaaagcgacactcattttaaaa 32258942  T
Q  205 cgg 207  Q
    |||    
T  32258943 cgg 32258945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 105 - 216
Target Start/End: Complemental strand, 26669120 - 26669009
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaa 204  Q
    |||||||||||||| |||||||||||||||||||| ||| |||||||||||  |||||||||| | | ||  ||||||||||||| ||||||||||||||    
T  26669120 ataaagtaagggcaatttagtaaaaacgttatatccaataattatttcattatatttcttaatctttgtgctaaagcctaaagcgacactcattttaaaa 26669021  T
Q  205 cggaaggaatac 216  Q
    |||| |||||||    
T  26669020 cggagggaatac 26669009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 105 - 208
Target Start/End: Complemental strand, 1924696 - 1924594
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaa 204  Q
    |||||||||| | |||||||||||||||||||||| |||||||||||||||  |||||||||| |||||| |||| ||||||||| |||| ||||| |||    
T  1924696 ataaagtaagagaagtttagtaaaaacgttatatccaatgattatttcattatatttcttaatttgtatgccaaatcctaaagcgacact-attttgaaa 1924598  T
Q  205 cgga 208  Q
    ||||    
T  1924597 cgga 1924594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 112 - 208
Target Start/End: Complemental strand, 23936598 - 23936502
Alignment:
Q  112 aagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaacgga 208  Q
    ||||||| || |||||||| |||||||| |||||||||||||||| |||||||||||||| |  |||  |||||| || ||||||||||||||||||    
T  23936598 aagggcaattcagtaaaaatgttatatctaatgattatttcattccatttcttaatatgtgtcccaacacctaaaacgacactcattttaaaacgga 23936502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 112 - 212
Target Start/End: Complemental strand, 34439423 - 34439323
Alignment:
Q  112 aagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaacggaagg 211  Q
    ||||||| |||| |||||| |||||||| |||||||||||||||  |||||||||| | | ||||||  |||||| || |||||||||||||||||||||    
T  34439423 aagggcaatttaataaaaatgttatatctaatgattatttcatttcatttcttaatttatgtgtcaacacctaaaacgacactcattttaaaacggaagg 34439324  T
Q  212 a 212  Q
    |    
T  34439323 a 34439323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 208
Target Start/End: Complemental strand, 19689858 - 19689767
Alignment:
Q  116 gcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaacgga 208  Q
    ||||||||||||||  |||||||| ||| |||||||||||| ||||||| |||||| || |||||| |||||||  | |||||||||||||||    
T  19689858 gcagtttagtaaaattgttatatctaataattatttcattccatttctt-atatgtgtgacaaagcttaaagcgatattcattttaaaacgga 19689767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 198
Target Start/End: Complemental strand, 4131970 - 4131877
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcatt 198  Q
    ||||| ||| || ||||||||||||| |||||||  ||||||||||| |||  |||||||||||||| ||||||| ||| || || ||||||||    
T  4131970 ataaaataaaggtagtttagtaaaaatgttatatataatgattatttaattttatttcttaatatgtgtgtcaaaaccttaaacgacactcatt 4131877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 208
Target Start/End: Original strand, 29915683 - 29915776
Alignment:
Q  115 ggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaacgga 208  Q
    |||||||||||||||  ||||| || ||| ||||||||||||||||||||||||||| || |||  |||||| |  || ||||||| |||||||    
T  29915683 ggcagtttagtaaaagtgttatttctaattattatttcattcaatttcttaatatgtgtgccaacacctaaaacaacattcattttgaaacgga 29915776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 3015919 - 3015958
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  3015919 tcaaaatgaatgtcactttacattttcaatacaactttaa 3015958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 32258725 - 32258764
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  32258725 tcaaaatgaatgtcactttacattttcaatacaactttaa 32258764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 12828703 - 12828653
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcatt 155  Q
    |||||||||||||||||||||||||  ||||| || |||||||||||||||    
T  12828703 ataaagtaagggcagtttagtaaaagtgttatgtctaatgattatttcatt 12828653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 4124004 - 4123965
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    |||||||||||||||||||||||||| ||||||| |||||    
T  4124004 tcaaaatgaatgtcactttacatttttaatacaactttaa 4123965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 29915544 - 29915583
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    ||||||||||||||||||||||||| |||||||| |||||    
T  29915544 tcaaaatgaatgtcactttacatttccaatacaactttaa 29915583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 29927210 - 29927249
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    ||||||||||||||||||||||||| |||||||| |||||    
T  29927210 tcaaaatgaatgtcactttacatttccaatacaactttaa 29927249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 31275791 - 31275752
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    ||||||||||||||||||||||||| |||||||| |||||    
T  31275791 tcaaaatgaatgtcactttacatttccaatacaactttaa 31275752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 1924811 - 1924774
Alignment:
Q  3 aaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    ||||||||||||| |||||||||||||||||| |||||    
T  1924811 aaaatgaatgtcattttacattttcaatacaactttaa 1924774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 4132122 - 4132085
Alignment:
Q  3 aaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  4132122 aaaatgaatgtcactttacatttttaatacaactttaa 4132085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 10494723 - 10494683
Alignment:
Q  131 cgttatatcaaatgattatttcattcaatttcttaatatgt 171  Q
    |||||| || |||||||||||||||| ||||||||||||||    
T  10494723 cgttatgtctaatgattatttcattctatttcttaatatgt 10494683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 105 - 205
Target Start/End: Complemental strand, 31817224 - 31817124
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaa 204  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||| ||| ||||||||||||||||| |||| ||||| |||    
T  31817224 ataaagtaagggaagtttagtaaaaacgttatatccaatgattatttcattccatttcttaatttgtgtgtcaaagcctaaagcgacactaattttgaaa 31817125  T
Q  205 c 205  Q
    |    
T  31817124 c 31817124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 105 - 208
Target Start/End: Complemental strand, 56423024 - 56422921
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaa 204  Q
    ||||||||| | ||||||||||||| ||||||||| |||||||||||||||| |||||||||| ||| ||||||||||||||||| |||||||||| |||    
T  56423024 ataaagtaaagacagtttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtgtgtcaaagcctaaagcgacactcattttgaaa 56422925  T
Q  205 cgga 208  Q
    ||||    
T  56422924 cgga 56422921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 105 - 206
Target Start/End: Original strand, 52732718 - 52732819
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaa 204  Q
    |||||||||||||||||||||||||  |||||||| |||||||||||||||| |||| ||||| | | |||||||||||||| || ||||||||||||||    
T  52732718 ataaagtaagggcagtttagtaaaagtgttatatccaatgattatttcattccattttttaatctatgtgtcaaagcctaaaacgtcactcattttaaaa 52732817  T
Q  205 cg 206  Q
    ||    
T  52732818 cg 52732819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 105 - 205
Target Start/End: Original strand, 54512150 - 54512250
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaa 204  Q
    |||||||||| |||||||||||||||||||||||| ||| |||||||||||  |||||||||||||| |||||||| ||||||||  ||||||||| |||    
T  54512150 ataaagtaagagcagtttagtaaaaacgttatatccaattattatttcatttcatttcttaatatgtgtgtcaaagactaaagcgatactcattttgaaa 54512249  T
Q  205 c 205  Q
    |    
T  54512250 c 54512250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 105 - 208
Target Start/End: Original strand, 44855371 - 44855474
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaa 204  Q
    ||||||||||||||||||||||||| ||||||||  |||||||||||||||| |||||||||| ||| || |||||| ||||||| | |||||||| |||    
T  44855371 ataaagtaagggcagtttagtaaaagcgttatattcaatgattatttcattctatttcttaatttgtgtgccaaagcgtaaagcgacgctcattttgaaa 44855470  T
Q  205 cgga 208  Q
    ||||    
T  44855471 cgga 44855474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 105 - 209
Target Start/End: Original strand, 21045260 - 21045362
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaa 204  Q
    ||||||||||||||||||| ||||| | ||||||| |||||||||||||||| ||| |||||| ||  ||||||||||||||||| |||||||||| |||    
T  21045260 ataaagtaagggcagtttaataaaagccttatatccaatgattatttcattccattccttaatctg--tgtcaaagcctaaagcgacactcattttgaaa 21045357  T
Q  205 cggaa 209  Q
    |||||    
T  21045358 cggaa 21045362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 105 - 208
Target Start/End: Original strand, 50072378 - 50072484
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttctt---aatatgtatgtcaaagcctaaagcggcactcatttta 201  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||   ||| ||| |  ||||| |||||||| ||||||||||     
T  50072378 ataaagtaagggcagtttagtaaaaacgttatatccaatgattatttcattccatttcttataaatctgtgtaccaaagtctaaagcgacactcattttg 50072477  T
Q  202 aaacgga 208  Q
    |||||||    
T  50072478 aaacgga 50072484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 105 - 178
Target Start/End: Original strand, 51930703 - 51930776
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaa 178  Q
    ||||||||||||||||||||||||| ||||||||| ||| |||||||||||| ||||| |||| ||||||||||    
T  51930703 ataaagtaagggcagtttagtaaaagcgttatatccaattattatttcattccatttcataatttgtatgtcaa 51930776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 105 - 208
Target Start/End: Complemental strand, 43421149 - 43421046
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaa 204  Q
    |||||||||| ||| ||||||||||   ||||||| |||||||||||||||| |||||||||| ||| || |||||  ||||||  |||||||||| |||    
T  43421149 ataaagtaagagcaatttagtaaaagtattatatccaatgattatttcattccatttcttaatttgtgtgccaaagtttaaagcaacactcattttgaaa 43421050  T
Q  205 cgga 208  Q
    ||||    
T  43421049 cgga 43421046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 167
Target Start/End: Complemental strand, 32141011 - 32140949
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaat 167  Q
    |||||||| ||||||||||||||||  ||||| || |||||||||||||||||||||||||||    
T  32141011 ataaagtaggggcagtttagtaaaagtgttatgtctaatgattatttcattcaatttcttaat 32140949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 167
Target Start/End: Complemental strand, 45903441 - 45903379
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaat 167  Q
    |||||||||| |||||||| ||||| ||||||||| |||||||||||||||| ||||||||||    
T  45903441 ataaagtaagagcagtttaataaaagcgttatatccaatgattatttcattctatttcttaat 45903379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 15501179 - 15501129
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcatt 155  Q
    |||||||||||||||||||||||||| ||||| || |||||||||||||||    
T  15501179 ataaagtaagggcagtttagtaaaaatgttatgtctaatgattatttcatt 15501129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 34360132 - 34360182
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcatt 155  Q
    |||||||||||||||||||||||||  |||||||| |||||||||||||||    
T  34360132 ataaagtaagggcagtttagtaaaagtgttatatctaatgattatttcatt 34360182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 21045156 - 21045195
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  21045156 tcaaaatgaatgtcactttacattttcaatacaactttaa 21045195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 45903557 - 45903518
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  45903557 tcaaaatgaatgtcactttacattttcaatacaactttaa 45903518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 50072281 - 50072320
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  50072281 tcaaaatgaatgtcactttacattttcaatacaactttaa 50072320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 105 - 179
Target Start/End: Original strand, 19849211 - 19849285
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaa 179  Q
    ||||||| |||||||||||||||||| |||||||  ||| ||||||| |||  |||||||||||||  |||||||    
T  19849211 ataaagtgagggcagtttagtaaaaatgttatatgtaataattattttatttcatttcttaatatgcgtgtcaaa 19849285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 37445787 - 37445837
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcatt 155  Q
    |||||||||||||||||||||||||  ||||| || |||||||||||||||    
T  37445787 ataaagtaagggcagtttagtaaaagtgttatgtctaatgattatttcatt 37445837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 31941560 - 31941597
Alignment:
Q  3 aaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    |||||||||||||||||||||||||||||||| |||||    
T  31941560 aaaatgaatgtcactttacattttcaatacaactttaa 31941597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 45520607 - 45520570
Alignment:
Q  3 aaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    |||||||||||||||||||||||||||||||| |||||    
T  45520607 aaaatgaatgtcactttacattttcaatacaactttaa 45520570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 47321146 - 47321183
Alignment:
Q  3 aaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    |||||||||||||||||||||||||||||||| |||||    
T  47321146 aaaatgaatgtcactttacattttcaatacaactttaa 47321183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 1868250 - 1868211
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    |||||||||||||||||||||||||||||| ||| |||||    
T  1868250 tcaaaatgaatgtcactttacattttcaatgcaactttaa 1868211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 19282562 - 19282523
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    ||||||||||||||||||||||||| |||||||| |||||    
T  19282562 tcaaaatgaatgtcactttacatttccaatacaactttaa 19282523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 29840075 - 29840114
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    ||||||||||||||||||||||||| |||||||| |||||    
T  29840075 tcaaaatgaatgtcactttacatttccaatacaactttaa 29840114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 40
Target Start/End: Original strand, 30492732 - 30492767
Alignment:
Q  5 aatgaatgtcactttacattttcaatacaattttaa 40  Q
    |||||||||||||||||||||||||||||| |||||    
T  30492732 aatgaatgtcactttacattttcaatacaactttaa 30492767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 208
Target Start/End: Original strand, 34096143 - 34096246
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaa 204  Q
    |||||||||||||| ||||||||||  ||||  || |||||||||||||||  |||| ||||| ||| ||  |  ||||||| || ||||||| ||||||    
T  34096143 ataaagtaagggcaatttagtaaaagtgttaagtctaatgattatttcatttcattttttaatttgtgtgcaattgcctaaaacgacactcatcttaaaa 34096242  T
Q  205 cgga 208  Q
    ||||    
T  34096243 cgga 34096246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 51930600 - 51930639
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    |||||||||||||| |||||||||| ||||||||||||||    
T  51930600 tcaaaatgaatgtcgctttacatttccaatacaattttaa 51930639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 56556405 - 56556366
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    ||||||||||||||||||||||||| |||||||| |||||    
T  56556405 tcaaaatgaatgtcactttacatttccaatacaactttaa 56556366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 167
Target Start/End: Complemental strand, 45520483 - 45520421
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaat 167  Q
    |||| |||||||||| |||||||||  ||||| || ||||||||||| |||| ||||||||||    
T  45520483 ataatgtaagggcagcttagtaaaagtgttatgtctaatgattattttattccatttcttaat 45520421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 15501295 - 15501258
Alignment:
Q  3 aaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  15501295 aaaatgaatgtcactttacatttccaatacaactttaa 15501258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 52732601 - 52732638
Alignment:
Q  3 aaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  52732601 aaaatgaatgtcactttacatttccaatacaactttaa 52732638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 31
Target Start/End: Original strand, 3093355 - 3093383
Alignment:
Q  3 aaaatgaatgtcactttacattttcaata 31  Q
    |||||||||||||||||||||||||||||    
T  3093355 aaaatgaatgtcactttacattttcaata 3093383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 179
Target Start/End: Original strand, 51906291 - 51906327
Alignment:
Q  143 tgattatttcattcaatttcttaatatgtatgtcaaa 179  Q
    |||||||||||||| |||||||||| |||||||||||    
T  51906291 tgattatttcattccatttcttaatttgtatgtcaaa 51906327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 47)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 105 - 208
Target Start/End: Complemental strand, 26965530 - 26965427
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaa 204  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||||||  |||||||||| ||| ||||||||||||||| | |||| |||||||||    
T  26965530 ataaagtaagggcagtttagtaaaagcgttatatccaatgattatttcattttatttcttaatctgtgtgtcaaagcctaaagtgacacttattttaaaa 26965431  T
Q  205 cgga 208  Q
    ||||    
T  26965430 cgga 26965427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 105 - 208
Target Start/End: Original strand, 790203 - 790306
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaa 204  Q
    ||||||||||||||||||||||||| ||||||||  |||||||||||||||  |||||||||||||| |||||||||||||| |  |||| |||||||||    
T  790203 ataaagtaagggcagtttagtaaaagcgttatattcaatgattatttcattacatttcttaatatgtgtgtcaaagcctaaaacaacactaattttaaaa 790302  T
Q  205 cgga 208  Q
    ||||    
T  790303 cgga 790306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 105 - 208
Target Start/End: Original strand, 53716134 - 53716238
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcatttt-aaa 203  Q
    |||||||||| |||||||||||||| ||||||||| |||||||||||||||  |||||||||| | | |||||||| |||||||| |||||||||| |||    
T  53716134 ataaagtaagagcagtttagtaaaagcgttatatccaatgattatttcatttcatttcttaatttatgtgtcaaagtctaaagcgacactcattttgaaa 53716233  T
Q  204 acgga 208  Q
    |||||    
T  53716234 acgga 53716238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 105 - 194
Target Start/End: Original strand, 34059996 - 34060085
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcact 194  Q
    |||||||||||| |||||||||||||| ||||||| ||| |||||||||||| |||||||||| ||| || |||||||||||||| ||||    
T  34059996 ataaagtaagggtagtttagtaaaaactttatatccaattattatttcattccatttcttaatctgtgtgccaaagcctaaagcgacact 34060085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 105 - 187
Target Start/End: Complemental strand, 37225617 - 37225535
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaag 187  Q
    ||||||||||| |||||||||||||   ||||||| |||||||||||||||  |||||||||| | |||||||||||||||||    
T  37225617 ataaagtaaggacagtttagtaaaagtattatatccaatgattatttcattgtatttcttaatctatatgtcaaagcctaaag 37225535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 167
Target Start/End: Complemental strand, 647614 - 647552
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaat 167  Q
    |||||||||||||||||||||||||  |||||||| |||||||||||||||  ||||||||||    
T  647614 ataaagtaagggcagtttagtaaaactgttatatctaatgattatttcatttcatttcttaat 647552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 186
Target Start/End: Original strand, 19552662 - 19552744
Alignment:
Q  105 ataaagtaagggcagtttagtaaaa-acgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaa 186  Q
    ||||||||||| ||||||||||||| |||||||||| |||||||||||||||  |||||||||| ||| || ||||| |||||    
T  19552662 ataaagtaaggacagtttagtaaaaaacgttatatccaatgattatttcatttcatttcttaatttgtgtgccaaagtctaaa 19552744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 171
Target Start/End: Complemental strand, 46363032 - 46362966
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgt 171  Q
    ||||||||||| |||||||||||||| ||||  || |||||||||||||||||||| ||||||||||    
T  46363032 ataaagtaaggacagtttagtaaaaatgttaggtctaatgattatttcattcaattccttaatatgt 46362966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 208
Target Start/End: Complemental strand, 42857102 - 42857010
Alignment:
Q  116 gcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaacgga 208  Q
    ||||||||||||||| ||||| || |||||||||||||||  ||| |||||| ||| ||| |  ||||||| || ||||||||||||||||||    
T  42857102 gcagtttagtaaaaatgttatgtctaatgattatttcatttgattccttaatctgtgtgtaattgcctaaaacgacactcattttaaaacgga 42857010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 112 - 207
Target Start/End: Original strand, 43580617 - 43580712
Alignment:
Q  112 aagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaacgg 207  Q
    ||||||||||||||||||| |||||||  |||||||||||||||| ||| |||||| ||| ||  |  | |||||||| | |||||||||||||||    
T  43580617 aagggcagtttagtaaaaatgttatatgtaatgattatttcattctattccttaatctgtgtgcaattggctaaagcgtcgctcattttaaaacgg 43580712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 9167711 - 9167661
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcatt 155  Q
    |||||||||||||||||||||||||| ||||| | ||||||||||||||||    
T  9167711 ataaagtaagggcagtttagtaaaaatgttatgtgaaatgattatttcatt 9167661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 105 - 167
Target Start/End: Original strand, 38457591 - 38457653
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaat 167  Q
    ||||||||| |||||||||||||||  ||||| |  |||||||||||||||||||||||||||    
T  38457591 ataaagtaatggcagtttagtaaaagtgttatgtgtaatgattatttcattcaatttcttaat 38457653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 218
Target Start/End: Complemental strand, 2568034 - 2567921
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaa 204  Q
    ||||||||||| || ||| ||||||  |||||||| |||||||||||||||||||| |||||| | | ||  |  | ||||| || || |||||||||||    
T  2568034 ataaagtaaggacatttttgtaaaagtgttatatctaatgattatttcattcaattccttaatctatgtgcaattggctaaaacgacattcattttaaaa 2567935  T
Q  205 cggaaggaatacta 218  Q
    |||| |||||||||    
T  2567934 cggatggaatacta 2567921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 208
Target Start/End: Original strand, 25061824 - 25061927
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaa 204  Q
    |||||||||||| ||||||||||||  ||||| || |||||||||||||||  ||| |||||||||| ||  |  | ||||| || |||||||||| |||    
T  25061824 ataaagtaagggtagtttagtaaaagtgttatgtctaatgattatttcatttcattccttaatatgtgtgcaatcggctaaaacgacactcatttttaaa 25061923  T
Q  205 cgga 208  Q
    ||||    
T  25061924 cgga 25061927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 25722610 - 25722571
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  25722610 tcaaaatgaatgtcactttacattttcaatacaactttaa 25722571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 26965648 - 26965609
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  26965648 tcaaaatgaatgtcactttacattttcaatacaactttaa 26965609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 44854319 - 44854358
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  44854319 tcaaaatgaacgtcactttacattttcaatacaattttaa 44854358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 46363160 - 46363121
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  46363160 tcaaaatgaatgtcactttacattttcaatacaactttaa 46363121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 109 - 219
Target Start/End: Complemental strand, 6084845 - 6084735
Alignment:
Q  109 agtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaacgga 208  Q
    |||||| |||||||| |||||| || || || |||||||||||||||  |||| ||||| ||| ||| ||| ||| || || |||||||| | |||||||    
T  6084845 agtaagagcagtttaataaaaatgtaatgtctaatgattatttcatttcattttttaatttgtgtgttaaaaccttaaacgacactcattgtgaaacgga 6084746  T
Q  209 aggaatactat 219  Q
    |||| ||||||    
T  6084745 aggagtactat 6084735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 105 - 167
Target Start/End: Original strand, 35239492 - 35239554
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaat 167  Q
    ||||||||||| |||||||||||||| |||||  | ||||||||||| ||||||||| |||||    
T  35239492 ataaagtaaggacagtttagtaaaaatgttatgcctaatgattattttattcaattttttaat 35239554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 1341067 - 1341030
Alignment:
Q  3 aaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    |||||||||||||||||||||||||||||||| |||||    
T  1341067 aaaatgaatgtcactttacattttcaatacaactttaa 1341030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 19552546 - 19552583
Alignment:
Q  3 aaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    |||||||||||||||||||||||||||||||| |||||    
T  19552546 aaaatgaatgtcactttacattttcaatacaactttaa 19552583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 45095559 - 45095596
Alignment:
Q  3 aaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    |||||||||||||||||||||||||||||||| |||||    
T  45095559 aaaatgaatgtcactttacattttcaatacaactttaa 45095596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 2988758 - 2988722
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattt 37  Q
    ||||||||||||||||||||||||| |||||||||||    
T  2988758 tcaaaatgaatgtcactttacatttccaatacaattt 2988722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 32304051 - 32304015
Alignment:
Q  4 aaatgaatgtcactttacattttcaatacaattttaa 40  Q
    ||||||||||||||||||||||||||||||| |||||    
T  32304051 aaatgaatgtcactttacattttcaatacaactttaa 32304015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 83300 - 83339
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    ||||||||||||||| |||||||||||||||||| |||||    
T  83300 tcaaaatgaatgtcattttacattttcaatacaactttaa 83339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 171
Target Start/End: Original strand, 5244742 - 5244781
Alignment:
Q  132 gttatatcaaatgattatttcattcaatttcttaatatgt 171  Q
    ||||| || |||||||||||||||||||||||||||||||    
T  5244742 gttatgtctaatgattatttcattcaatttcttaatatgt 5244781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 204
Target Start/End: Complemental strand, 27483215 - 27483116
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaa 204  Q
    |||||||||||| | ||||||||||  ||||| || |||||||||||||||  ||| |||||| ||| ||  |  | |||||||| ||||||||||||||    
T  27483215 ataaagtaagggaaatttagtaaaagtgttatgtctaatgattatttcatttcattccttaatttgtgtgcaatgggctaaagcgacactcattttaaaa 27483116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 27483333 - 27483294
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    ||||||||||||||||||||||||| |||||||| |||||    
T  27483333 tcaaaatgaatgtcactttacatttccaatacaactttaa 27483294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 208
Target Start/End: Complemental strand, 31290996 - 31290893
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaa 204  Q
    ||||| ||| |||||||||||||||  ||||| || ||| |||||||||||  ||| |||||| ||| ||| |  | ||||| || ||||||||||||||    
T  31290996 ataaaataaaggcagtttagtaaaagtgttatgtctaataattatttcatttcattccttaatctgtgtgtaattggctaaaacgacactcattttaaaa 31290897  T
Q  205 cgga 208  Q
    ||||    
T  31290896 cgga 31290893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 37225744 - 37225705
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    ||||||||||||||||||||||||| |||||||| |||||    
T  37225744 tcaaaatgaatgtcactttacatttccaatacaactttaa 37225705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 43580479 - 43580518
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    ||||||| |||||||||||||||||||||||||| |||||    
T  43580479 tcaaaataaatgtcactttacattttcaatacaactttaa 43580518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 43600339 - 43600300
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    ||||||| ||||| ||||||||||||||||||||||||||    
T  43600339 tcaaaataaatgttactttacattttcaatacaattttaa 43600300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 208
Target Start/End: Complemental strand, 44648432 - 44648329
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaa 204  Q
    ||||||||| |||||||||||||||  ||||| || |||||||||||||||  ||| |||||| ||| ||  |  | ||||| || |||||||||| |||    
T  44648432 ataaagtaaaggcagtttagtaaaagtgttatgtctaatgattatttcatttcattccttaatctgtgtgcaattggctaaaacgacactcattttgaaa 44648333  T
Q  205 cgga 208  Q
    ||||    
T  44648332 cgga 44648329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 171
Target Start/End: Complemental strand, 36771598 - 36771532
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgt 171  Q
    ||||| |||| |||||||||||||||  |||| || ||| |||||||||||  ||||||||||||||    
T  36771598 ataaaataagagcagtttagtaaaaatattatgtctaataattatttcattatatttcttaatatgt 36771532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 50420380 - 50420454
Alignment:
Q  132 gttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaacg 206  Q
    ||||| ||||||||||||||||||| |||| ||||| ||| |||||||  || || || |||| |||||||||||    
T  50420380 gttatgtcaaatgattatttcattctattttttaatctgtgtgtcaaaatcttaaacgacacttattttaaaacg 50420454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 2568150 - 2568113
Alignment:
Q  3 aaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  2568150 aaaatgaatgttactttacattttcaatacaactttaa 2568113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 3000758 - 3000795
Alignment:
Q  3 aaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  3000758 aaaatgaatgttactttacattttcaatacaactttaa 3000795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 34059882 - 34059919
Alignment:
Q  3 aaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    ||||||||||||| |||||||||||||||||| |||||    
T  34059882 aaaatgaatgtcattttacattttcaatacaactttaa 34059919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 36771714 - 36771677
Alignment:
Q  3 aaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  36771714 aaaatgaatgtcactttacatttacaatacaactttaa 36771677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 38165683 - 38165614
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatg 174  Q
    ||||||||||| |||||||||||||  ||||| |  |||||||||||||||  ||| |||||| ||||||    
T  38165683 ataaagtaaggacagtttagtaaaagtgttatgtttaatgattatttcattacattccttaatctgtatg 38165614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 42007208 - 42007171
Alignment:
Q  3 aaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  42007208 aaaatgaatgtcgttttacattttcaatacaattttaa 42007171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 215
Target Start/End: Original strand, 48901890 - 48901947
Alignment:
Q  158 atttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaacggaaggaata 215  Q
    |||||||||||||||||| |||  || || || |||||||||||||||||||| ||||    
T  48901890 atttcttaatatgtatgtaaaaaacttaaacgacactcattttaaaacggaagaaata 48901947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 4392035 - 4392095
Alignment:
Q  114 gggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatg 174  Q
    ||||||||||||||||  ||||| || ||| |||||||||||  |||||||||| ||||||    
T  4392035 gggcagtttagtaaaagtgttatgtctaataattatttcatttcatttcttaatttgtatg 4392095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 167
Target Start/End: Original strand, 22731072 - 22731124
Alignment:
Q  115 ggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaat 167  Q
    |||||||||||||||| ||||| |  |||||||||||||||  ||||||||||    
T  22731072 ggcagtttagtaaaaatgttatgtttaatgattatttcattatatttcttaat 22731124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 219
Target Start/End: Original strand, 30706660 - 30706704
Alignment:
Q  175 tcaaagcctaaagcggcactcattttaaaacggaaggaatactat 219  Q
    ||||||||||||||| |||||||||| ||||||| ||| ||||||    
T  30706660 tcaaagcctaaagcgacactcattttgaaacggagggagtactat 30706704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 44648548 - 44648512
Alignment:
Q  3 aaaatgaatgtcactttacattttcaatacaatttta 39  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  44648548 aaaatgaatgtcactttacatttccaatacaacttta 44648512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 105 - 216
Target Start/End: Original strand, 1673 - 1784
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaa 204  Q
    |||||||||||||| |||||||||||||||||||| ||| |||||||||||  |||||||||| | | ||  ||||||||||||| ||||||||||||||    
T  1673 ataaagtaagggcaatttagtaaaaacgttatatccaataattatttcattatatttcttaatctttgtgctaaagcctaaagcgacactcattttaaaa 1772  T
Q  205 cggaaggaatac 216  Q
    |||| |||||||    
T  1773 cggagggaatac 1784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 105 - 200
Target Start/End: Original strand, 52403606 - 52403701
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcatttt 200  Q
    ||||||||||||||||||| ||| |  |||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||| || |||||||    
T  52403606 ataaagtaagggcagtttaataacagtgttatatccaatgattatttcattccatttcttaatctgtatgtcaaagcctaaagcgacattcatttt 52403701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 112 - 208
Target Start/End: Original strand, 1429004 - 1429100
Alignment:
Q  112 aagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaacgga 208  Q
    ||||||||||||||||||  |||||||| ||| ||||||||||||||||||||||||| | ||||||  |||||| |  ||||||||||||||||||    
T  1429004 aagggcagtttagtaaaagtgttatatctaataattatttcattcaatttcttaatatatgtgtcaacacctaaaaccacactcattttaaaacgga 1429100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 108 - 208
Target Start/End: Complemental strand, 10690974 - 10690874
Alignment:
Q  108 aagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaacgg 207  Q
    ||||||| ||||||||||||||| |||||||| |||||||||||||||  |||||||||||||| || |||| ||| || || |||||||| ||||||||    
T  10690974 aagtaagtgcagtttagtaaaaatgttatatctaatgattatttcatttcatttcttaatatgtgtggcaaaaccttaaacgacactcattgtaaaacgg 10690875  T
Q  208 a 208  Q
    |    
T  10690874 a 10690874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 105 - 208
Target Start/End: Complemental strand, 50158340 - 50158237
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaa 204  Q
    |||||| ||||| ||||||||||||  |||||||| |||||||||| ||||  |||||||||| | | ||||||||||||||| | |||||||||| |||    
T  50158340 ataaagcaagggaagtttagtaaaagtgttatatccaatgattattgcattatatttcttaatctatgtgtcaaagcctaaagtgacactcattttgaaa 50158241  T
Q  205 cgga 208  Q
    ||||    
T  50158240 cgga 50158237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 106 - 176
Target Start/End: Original strand, 11650189 - 11650259
Alignment:
Q  106 taaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtc 176  Q
    |||||||||||||||||||||||||   |||||| |||| |||||||||||||||||||||| ||||||||    
T  11650189 taaagtaagggcagtttagtaaaaatactatatctaatggttatttcattcaatttcttaatctgtatgtc 11650259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 204
Target Start/End: Complemental strand, 1430547 - 1430459
Alignment:
Q  116 gcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaa 204  Q
    ||||||||||||||  |||||||| ||| ||||||||||| ||||||||||| ||| || |||  |||||| || ||||||||||||||    
T  1430547 gcagtttagtaaaagtgttatatctaattattatttcattaaatttcttaatctgtgtgccaacacctaaaacgacactcattttaaaa 1430459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 105 - 167
Target Start/End: Complemental strand, 24041046 - 24040984
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaat 167  Q
    |||||||||||||||||||||||||  ||||| || |||||||||||||||| ||| ||||||    
T  24041046 ataaagtaagggcagtttagtaaaagtgttatgtctaatgattatttcattccattccttaat 24040984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 105 - 179
Target Start/End: Original strand, 43929814 - 43929888
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaa 179  Q
    ||||||||| || ||| ||||||||  ||||| || ||||||||||||||||||||||||||| ||| |||||||    
T  43929814 ataaagtaatggaagtatagtaaaagtgttatgtctaatgattatttcattcaatttcttaatttgtgtgtcaaa 43929888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 105 - 167
Target Start/End: Complemental strand, 50349879 - 50349817
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaat 167  Q
    |||||||||||||||||||||||||  ||||| || |||||||||||||||| ||| ||||||    
T  50349879 ataaagtaagggcagtttagtaaaagtgttatgtctaatgattatttcattccattccttaat 50349817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 105 - 205
Target Start/End: Complemental strand, 84540 - 84440
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaa 204  Q
    ||||||||||| || ||||||||||  ||||| || |||||||||||||||||||| |||||| ||| ||  |  | |||||||| |||||||||| |||    
T  84540 ataaagtaaggacattttagtaaaagtgttatgtctaatgattatttcattcaattccttaatctgtgtgcaattgactaaagcgacactcattttgaaa 84441  T
Q  205 c 205  Q
    |    
T  84440 c 84440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 115 - 167
Target Start/End: Original strand, 6332307 - 6332359
Alignment:
Q  115 ggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaat 167  Q
    |||||||||||||||  ||||| || |||||||||||||||||||||||||||    
T  6332307 ggcagtttagtaaaagtgttatgtctaatgattatttcattcaatttcttaat 6332359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 11650061 - 11650100
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  11650061 tcaaaatgaatgtcactttacattttcaatacaactttaa 11650100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 24041150 - 24041111
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  24041150 tcaaaatgaatgtcactttacattttcaatacaactttaa 24041111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 40061046 - 40061007
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  40061046 tcaaaatgaatgtcactttacattttcaatacaactttaa 40061007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 50158456 - 50158417
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  50158456 tcaaaatgaatgtcactttacattttcaatacaactttaa 50158417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 105 - 151
Target Start/End: Complemental strand, 28751430 - 28751384
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattattt 151  Q
    |||||||||||||||||||||||||| ||||| || |||||||||||    
T  28751430 ataaagtaagggcagtttagtaaaaatgttatgtctaatgattattt 28751384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 105 - 171
Target Start/End: Complemental strand, 40060928 - 40060862
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgt 171  Q
    |||||||||||||| ||||||||||  ||||| || ||| |||||||||||  ||||||||||||||    
T  40060928 ataaagtaagggcaatttagtaaaagtgttatgtctaatcattatttcatttcatttcttaatatgt 40060862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 120 - 170
Target Start/End: Complemental strand, 43105609 - 43105559
Alignment:
Q  120 tttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatg 170  Q
    ||||||||||  ||||| || ||||||||||||||||||||||||||||||    
T  43105609 tttagtaaaagtgttatgtctaatgattatttcattcaatttcttaatatg 43105559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 15647210 - 15647177
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  15647210 tcaaaatgaatgtcactttacattttcaatacaa 15647177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 213
Target Start/End: Original strand, 30006260 - 30006368
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaa 204  Q
    |||||||||| ||| |||||||| |  ||||| || ||||||||||||||||||||  ||||| ||| ||  |  | |||||||| || ||||||| |||    
T  30006260 ataaagtaagagcaatttagtaatagtgttatgtctaatgattatttcattcaattcattaatctgtgtgcaattgactaaagcgacattcattttgaaa 30006359  T
Q  205 cggaaggaa 213  Q
    |||||||||    
T  30006360 cggaaggaa 30006368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 5317726 - 5317687
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    |||||||||||||||||||||| ||||||||||| |||||    
T  5317726 tcaaaatgaatgtcactttacaatttcaatacaactttaa 5317687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 11134610 - 11134571
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    |||||||||||||||||||||||||||||| ||| |||||    
T  11134610 tcaaaatgaatgtcactttacattttcaatgcaactttaa 11134571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 38132317 - 38132278
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    ||||||||||||||||||||||||| |||||||| |||||    
T  38132317 tcaaaatgaatgtcactttacatttccaatacaactttaa 38132278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 43755056 - 43755095
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    |||||||||| ||||||||||||||||||||||| |||||    
T  43755056 tcaaaatgaacgtcactttacattttcaatacaactttaa 43755095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 48260003 - 48259964
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    ||||||||||||||||||||||||| |||||||| |||||    
T  48260003 tcaaaatgaatgtcactttacatttccaatacaactttaa 48259964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 212
Target Start/End: Complemental strand, 34032058 - 34032004
Alignment:
Q  158 atttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaacggaagga 212  Q
    |||| ||||||||||||| ||  |||||| || ||||||||||||||||||||||    
T  34032058 attttttaatatgtatgtaaacacctaaaacgacactcattttaaaacggaagga 34032004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 45377299 - 45377261
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaatttta 39  Q
    ||||||||||||||||||||||||| |||||||| ||||    
T  45377299 tcaaaatgaatgtcactttacatttccaatacaacttta 45377261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 84641 - 84604
Alignment:
Q  3 aaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  84641 aaaatgaatgtcactttacatttccaatacaactttaa 84604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 2245791 - 2245828
Alignment:
Q  3 aaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    |||||||||||||| ||||||||||||||||| |||||    
T  2245791 aaaatgaatgtcaccttacattttcaatacaactttaa 2245828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 22664942 - 22664975
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaa 34  Q
    ||||||||||||||||||||||||| ||||||||    
T  22664942 tcaaaatgaatgtcactttacatttccaatacaa 22664975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 26252121 - 26252154
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaa 34  Q
    ||||||||||||||||||||||||| ||||||||    
T  26252121 tcaaaatgaatgtcactttacatttccaatacaa 26252154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 215
Target Start/End: Complemental strand, 34047211 - 34047154
Alignment:
Q  158 atttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaacggaaggaata 215  Q
    |||||||||||||| ||| ||  |||||| || |||||||||||||||||| ||||||    
T  34047211 atttcttaatatgtgtgtaaacacctaaaacgacactcattttaaaacggagggaata 34047154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 28751558 - 28751518
Alignment:
Q  1 tcaaaatgaa-tgtcactttacattttcaatacaattttaa 40  Q
    |||||||||| |||||||||||||||||||||||| |||||    
T  28751558 tcaaaatgaaatgtcactttacattttcaatacaactttaa 28751518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 43105728 - 43105692
Alignment:
Q  3 aaaatgaatgtcactttacattttcaatacaatttta 39  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  43105728 aaaatgaatgtcaccttacattttcaatacaacttta 43105692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 52403482 - 52403518
Alignment:
Q  4 aaatgaatgtcactttacattttcaatacaattttaa 40  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  52403482 aaatgaatgtcactttaaattttcaatacaactttaa 52403518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 105 - 186
Target Start/End: Complemental strand, 41905957 - 41905876
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaa 186  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||| |  |||||||||| ||| ||||||||||||||    
T  41905957 ataaagtaagggcagtttagtaaaagcgttatatccaatgattatttcagttcatttcttaatctgtgtgtcaaagcctaaa 41905876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 28044163 - 28044096
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgta 172  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||| ||||    
T  28044163 ataaagtaagggcagtttagtaaaaacgttatatccaatgattatttcattttatttcttaatgtgta 28044096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 105 - 165
Target Start/End: Original strand, 18886776 - 18886836
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttctta 165  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||    
T  18886776 ataaagtaagggcagtttagtaaaagcgttatatctaatgattatttcattccatttctta 18886836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 105 - 171
Target Start/End: Original strand, 32275326 - 32275392
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgt 171  Q
    ||||||||| ||||||||||||||||||| || |  |||||||||||||||  ||||||||||||||    
T  32275326 ataaagtaaaggcagtttagtaaaaacgtcatgtttaatgattatttcatttcatttcttaatatgt 32275392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 208
Target Start/End: Complemental strand, 34002127 - 34002051
Alignment:
Q  132 gttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaacgga 208  Q
    |||||||| |||||||||||||||  |||||||||| ||| |||||||||| |||| |  ||||||||| |||||||    
T  34002127 gttatatccaatgattatttcatttcatttcttaatctgtgtgtcaaagccgaaagagagactcattttgaaacgga 34002051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 5723007 - 5723046
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  5723007 tcaaaatgaatgtcactttacattttcaatacaactttaa 5723046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 18733457 - 18733496
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  18733457 tcaaaatgaatgtcactttacattttcaatacaactttaa 18733496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 22597234 - 22597273
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  22597234 tcaaaatgaatgtcactttacattttcaatacaactttaa 22597273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 36447220 - 36447181
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  36447220 tcaaaatgaatgtcattttacattttcaatacaattttaa 36447181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 204
Target Start/End: Complemental strand, 36447633 - 36447534
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaa 204  Q
    ||||||||| | ||||||| |||||  |||||||| | | |||||||||||| |||||||||| |||||  ||||||||||| |  |||| |||||||||    
T  36447633 ataaagtaaagacagtttaataaaagagttatatccagtaattatttcattccatttcttaatctgtataccaaagcctaaaacaacacttattttaaaa 36447534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 40298851 - 40298890
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  40298851 tcaaaatgaatgtcactttacattttcaatacaactttaa 40298890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 105 - 179
Target Start/End: Original strand, 1103615 - 1103689
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaa 179  Q
    |||||||||||| ||||||||||||| ||| | ||   |||||||||||||  |||||||||| |||||||||||    
T  1103615 ataaagtaagggtagtttagtaaaaatgttttgtctggtgattatttcattttatttcttaatctgtatgtcaaa 1103689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 105 - 179
Target Start/End: Complemental strand, 42010597 - 42010523
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaa 179  Q
    ||||| ||||||||||||||||||||  |||| || ||||||||| | |||| |||| || ||||||||||||||    
T  42010597 ataaaataagggcagtttagtaaaaatattatgtctaatgattatcttattctatttattgatatgtatgtcaaa 42010523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 3681070 - 3681033
Alignment:
Q  3 aaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    |||||||||||||||||||||||||||||||| |||||    
T  3681070 aaaatgaatgtcactttacattttcaatacaactttaa 3681033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 28044279 - 28044242
Alignment:
Q  3 aaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    |||||||||||||||||||||||||||||||| |||||    
T  28044279 aaaatgaatgtcactttacattttcaatacaactttaa 28044242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 165
Target Start/End: Original strand, 34733440 - 34733500
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttctta 165  Q
    |||||||||||| ||||||||||||  ||||| || |||||||||||||||  ||||||||    
T  34733440 ataaagtaagggtagtttagtaaaagtgttatgtctaatgattatttcatttcatttctta 34733500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 171
Target Start/End: Complemental strand, 32873173 - 32873122
Alignment:
Q  120 tttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgt 171  Q
    |||| |||||| |||||||| |||||||||| ||||||||||||||| ||||    
T  32873173 tttaataaaaatgttatatctaatgattattgcattcaatttcttaacatgt 32873122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 36836063 - 36836102
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    |||||||||||||| ||||||||||||||||||| |||||    
T  36836063 tcaaaatgaatgtcgctttacattttcaatacaactttaa 36836102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 42044129 - 42044090
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    ||||||| |||||||||||||||||||||||||| |||||    
T  42044129 tcaaaattaatgtcactttacattttcaatacaactttaa 42044090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 167
Target Start/End: Complemental strand, 3680945 - 3680883
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaat 167  Q
    |||||||||| ||||||||||||||   |||| || |||||||||||||||| |||| |||||    
T  3680945 ataaagtaagagcagtttagtaaaagttttatgtctaatgattatttcattccattttttaat 3680883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 22627495 - 22627457
Alignment:
Q  2 caaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    |||||||||||||||||||||||| |||||||| |||||    
T  22627495 caaaatgaatgtcactttacatttccaatacaactttaa 22627457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 33056306 - 33056256
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcatt 155  Q
    |||||||||||||||||||||||||  ||||| |  |||||||||||||||    
T  33056306 ataaagtaagggcagtttagtaaaagtgttatgtttaatgattatttcatt 33056256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 48838702 - 48838652
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcatt 155  Q
    ||||||||||| |||||||||| ||| ||||| || |||||||||||||||    
T  48838702 ataaagtaaggtcagtttagtataaatgttatgtctaatgattatttcatt 48838652  T

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Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 18886675 - 18886712
Alignment:
Q  3 aaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    ||||||||| |||||||||||||||||||||| |||||    
T  18886675 aaaatgaatctcactttacattttcaatacaactttaa 18886712  T

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Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 19920419 - 19920382
Alignment:
Q  3 aaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    ||||||||||||||||||||||| |||||||| |||||    
T  19920419 aaaatgaatgtcactttacatttccaatacaactttaa 19920382  T

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Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 31416899 - 31416862
Alignment:
Q  3 aaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    ||||||||| |||||||||||||||||||||| |||||    
T  31416899 aaaatgaatatcactttacattttcaatacaactttaa 31416862  T

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Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 32873311 - 32873274
Alignment:
Q  3 aaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  32873311 aaaatgaatgtcactttatatttccaatacaattttaa 32873274  T

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Target: scaffold0580 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: scaffold0580
Description:

Target: scaffold0580; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 105 - 208
Target Start/End: Original strand, 1704 - 1807
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaa 204  Q
    ||||||||||| |||||||||||||| |||||||| |||||||||||||||  |||||||||| | | || ||| | |||||||| |||||||||| |||    
T  1704 ataaagtaaggtcagtttagtaaaaatgttatatccaatgattatttcatttcatttcttaatctatgtgccaacgtctaaagcgacactcattttgaaa 1803  T
Q  205 cgga 208  Q
    ||||    
T  1804 cgga 1807  T

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Target: scaffold0580; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 105 - 208
Target Start/End: Original strand, 9443 - 9546
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaa 204  Q
    ||||||||||| |||||||||||||| |||||||| |||||||||||||||  |||||||||| | | || ||| | |||||||| |||||||||| |||    
T  9443 ataaagtaaggtcagtttagtaaaaatgttatatccaatgattatttcatttcatttcttaatctatgtgccaacgtctaaagcgacactcattttgaaa 9542  T
Q  205 cgga 208  Q
    ||||    
T  9543 cgga 9546  T

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Target: scaffold0194 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 105 - 206
Target Start/End: Original strand, 8279 - 8380
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgtatgtcaaagcctaaagcggcactcattttaaaa 204  Q
    |||||| |||||||||||||||||| | ||||||| |||||||||||||||| |||| ||||| ||| || |||| ||||||||| || ||||||| |||    
T  8279 ataaagcaagggcagtttagtaaaagccttatatccaatgattatttcattccattttttaatctgtgtgccaaaacctaaagcgacattcattttgaaa 8378  T
Q  205 cg 206  Q
    ||    
T  8379 cg 8380  T

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Target: scaffold0194; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 8161 - 8200
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    ||||||||||||||| |||||||||||||||||| |||||    
T  8161 tcaaaatgaatgtcaatttacattttcaatacaactttaa 8200  T

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Target: scaffold0238 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 105 - 171
Target Start/End: Complemental strand, 16062 - 15996
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgt 171  Q
    ||||||||| || ||||||||||||| |||||||  ||||||||||||||| ||||| |||||||||    
T  16062 ataaagtaaaggtagtttagtaaaaatgttatatataatgattatttcatttaattttttaatatgt 15996  T

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Target: scaffold0047 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 70604 - 70565
Alignment:
Q  1 tcaaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    |||||||||||||||||||||||||||||| ||| |||||    
T  70604 tcaaaatgaatgtcactttacattttcaatgcaactttaa 70565  T

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Target: scaffold0886 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0886
Description:

Target: scaffold0886; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 171
Target Start/End: Complemental strand, 4130 - 4064
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaatatgt 171  Q
    ||||||||||| || ||| ||||||| ||||| |  ||||||| |||||||| ||||||||||||||    
T  4130 ataaagtaaggacaatttcgtaaaaatgttatgtataatgattgtttcattccatttcttaatatgt 4064  T

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Target: scaffold0072 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 167
Target Start/End: Complemental strand, 12103 - 12042
Alignment:
Q  105 ataaagtaagggcagtttagtaaaaacgttatatcaaatgattatttcattcaatttcttaat 167  Q
    ||||||||||| |||||||||||||  ||||| || |||||||||||||||| ||| ||||||    
T  12103 ataaagtaagg-cagtttagtaaaagtgttatgtctaatgattatttcattccattccttaat 12042  T

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Target: scaffold0189 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 13206 - 13169
Alignment:
Q  3 aaaatgaatgtcactttacattttcaatacaattttaa 40  Q
    |||||||| |||||||||||||| ||||||||||||||    
T  13206 aaaatgaacgtcactttacatttccaatacaattttaa 13169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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