View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11821_high_9 (Length: 511)
Name: NF11821_high_9
Description: NF11821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11821_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 40 - 497
Target Start/End: Original strand, 32615706 - 32616176
Alignment:
| Q |
40 |
ttatttaatcaacatatatataagagtatagatgttgcaattgatattgacaatacaaaagctcatcttaattttgacaacaca--tgaatttctaaaag |
137 |
Q |
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| T |
32615706 |
ttatttaatcaacatatatataagagtatagatgttgcaattgatattgacaatacaaaagctcatcttaattttgacaacacacatgaatttctaaaaa |
32615805 |
T |
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| Q |
138 |
a-tgaagtgtaaaagaagatgtaatagatggtttaagaatgtcatttactttcacaaatttagaatcacaaaccacaaaatggatcacac-nnnnnnnac |
235 |
Q |
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| T |
32615806 |
aatgaagtgtaaaagaagatgtaatagatggtttaagaatgtcatttactttcacaaatttagaatcacaaaccacaaaatggatcacactttttttttc |
32615905 |
T |
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| Q |
236 |
tttcttttctatgtcctttaatgaatactcccaacaagtgaccactaattaaatgagcaattagtgctccatgccaaatggccaatttcctctttctagt |
335 |
Q |
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| T |
32615906 |
tttcttttctatgtcctttaatgaatactcccaacaagtgaccactaattaaatgagcaattagtgctccatgccaaatggccaatttcctctttctagt |
32616005 |
T |
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| Q |
336 |
aacatatgcatgacattgagcttagatcattgt---------tttgaaaatggtaaaactgatcaatgtctgtttatacaaagccaagacacatttaatt |
426 |
Q |
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| T |
32616006 |
aacatatgcatgacattgagcttagatcattgtcattatctctttgaaaatggtaaaactgatcaatgtctgtttatacaaagccaagacacatttaatt |
32616105 |
T |
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| Q |
427 |
ttggccacaaccgtcacatttttcttcactgtgtatgaccaactgagctttattaatatcgttattttcat |
497 |
Q |
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| T |
32616106 |
ttggccacaaccgtgacatttttcttcactgtgtatgaccaattgtgctttattaatatcgttactttcat |
32616176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 48
Target Start/End: Original strand, 51187983 - 51188011
Alignment:
| Q |
20 |
caaaagtgcaattaagcctattatttaat |
48 |
Q |
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| T |
51187983 |
caaaagtgcaattaagcctattatttaat |
51188011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 48
Target Start/End: Original strand, 26675351 - 26675379
Alignment:
| Q |
20 |
caaaagtgcaattaagcctattatttaat |
48 |
Q |
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| T |
26675351 |
caaaagtgcaattaagcctattatttaat |
26675379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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