View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11821_low_11 (Length: 412)

Name: NF11821_low_11
Description: NF11821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11821_low_11
NF11821_low_11
[»] chr5 (5 HSPs)
chr5 (14-397)||(11607666-11608048)
chr5 (353-394)||(9827783-9827824)
chr5 (353-397)||(39570175-39570219)
chr5 (355-397)||(19357393-19357435)
chr5 (352-397)||(1826253-1826298)
[»] chr4 (6 HSPs)
chr4 (349-397)||(12473695-12473743)
chr4 (349-397)||(12528104-12528152)
chr4 (355-397)||(22343334-22343376)
chr4 (356-397)||(35869703-35869744)
chr4 (352-397)||(55590476-55590521)
chr4 (352-397)||(21260788-21260833)
[»] chr2 (4 HSPs)
chr2 (353-397)||(21603954-21603998)
chr2 (352-397)||(34392213-34392258)
chr2 (352-397)||(37358053-37358098)
chr2 (353-393)||(7381687-7381727)
[»] chr1 (5 HSPs)
chr1 (353-397)||(32676131-32676175)
chr1 (352-397)||(29119456-29119501)
chr1 (353-397)||(25161304-25161348)
chr1 (358-399)||(2569037-2569078)
chr1 (352-393)||(46435589-46435630)
[»] chr3 (7 HSPs)
chr3 (351-397)||(10179895-10179941)
chr3 (352-397)||(50934494-50934539)
chr3 (353-397)||(32319497-32319541)
chr3 (353-393)||(44380249-44380289)
chr3 (351-397)||(10018698-10018744)
chr3 (351-392)||(10123243-10123284)
chr3 (353-397)||(47426345-47426389)
[»] scaffold0229 (1 HSPs)
scaffold0229 (352-397)||(13138-13183)
[»] chr6 (2 HSPs)
chr6 (352-397)||(1211976-1212021)
chr6 (358-396)||(11753167-11753205)
[»] scaffold0032 (1 HSPs)
scaffold0032 (352-392)||(34188-34228)
[»] chr7 (2 HSPs)
chr7 (353-397)||(35341531-35341575)
chr7 (353-397)||(40893174-40893218)
[»] scaffold0041 (1 HSPs)
scaffold0041 (353-397)||(73066-73110)
[»] chr8 (1 HSPs)
chr8 (353-397)||(41179695-41179739)


Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 14 - 397
Target Start/End: Complemental strand, 11608048 - 11607666
Alignment:
Q  14 agaataaataataaaacgagaatacaaattaattttctcttctgcatagtagaattagaaaataatacaaattatattaacaaatttaatactacattat 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11608048 agaataaataataaaacgagaatacaaattaattttctcttctgcatagtagaattagaaaataatacaaattatattaacaaatttaatactacattat 11607949  T
Q  114 tttcttgattcttgttatttagtcaacaaaatcttataaataaggatgtagatatgtaccaattaaggacttacgaagtaaccacttagaagacacatgg 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  11607948 tttcttgattcttgttatttagtcaacaaaatcttataaataaggatgtagatatgta-caattaaggacttacgaagtaaccacttagaagacacatgg 11607850  T
Q  214 aaacttctgtacaaagaaattaagacacactatatagaaacttctgtggnnnnnnnngacagagagactagtggttagctttttatacagtgaacaactt 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||    
T  11607849 aaacttctgtacaaagaaattaagacacactatatagaaacttctgtggaaaaaaaagacagagagactagtggttagctttttatacagtgaacaactt 11607750  T
Q  314 aaccaatttaattagttataggatataccaacacaaagcggattccacttgtataccattaaggtatcaatggtatataccatt 397  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  11607749 aaccaatttaattagttataggatataccaacacaaaacggattccacttgtataccattaaggtaccaatggtatataccatt 11607666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 353 - 394
Target Start/End: Original strand, 9827783 - 9827824
Alignment:
Q  353 ggattccacttgtataccattaaggtatcaatggtatatacc 394  Q
    ||||||||||||| ||||||||||||| ||||||||||||||    
T  9827783 ggattccacttgtgtaccattaaggtaccaatggtatatacc 9827824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 353 - 397
Target Start/End: Complemental strand, 39570219 - 39570175
Alignment:
Q  353 ggattccacttgtataccattaaggtatcaatggtatataccatt 397  Q
    ||||||||||||| || |||||| |||||||||||||||||||||    
T  39570219 ggattccacttgtgtatcattaaagtatcaatggtatataccatt 39570175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 397
Target Start/End: Complemental strand, 19357435 - 19357393
Alignment:
Q  355 attccacttgtataccattaaggtatcaatggtatataccatt 397  Q
    ||||||||||| |||||||| |||| |||||||||||||||||    
T  19357435 attccacttgtgtaccattagggtaccaatggtatataccatt 19357393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 352 - 397
Target Start/End: Original strand, 1826253 - 1826298
Alignment:
Q  352 cggattccacttgtataccattaaggtatcaatggtatataccatt 397  Q
    ||||| |||||||| ||||||||| ||| |||||||||||||||||    
T  1826253 cggataccacttgtgtaccattaaagtaccaatggtatataccatt 1826298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 349 - 397
Target Start/End: Original strand, 12473695 - 12473743
Alignment:
Q  349 aagcggattccacttgtataccattaaggtatcaatggtatataccatt 397  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||||    
T  12473695 aagcggataccacttgtataccattaaggtaccaatggtatataccatt 12473743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 349 - 397
Target Start/End: Original strand, 12528104 - 12528152
Alignment:
Q  349 aagcggattccacttgtataccattaaggtatcaatggtatataccatt 397  Q
    |||||||| |||||||||||||||||||||| |||||||||||||||||    
T  12528104 aagcggataccacttgtataccattaaggtaccaatggtatataccatt 12528152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 355 - 397
Target Start/End: Original strand, 22343334 - 22343376
Alignment:
Q  355 attccacttgtataccattaaggtatcaatggtatataccatt 397  Q
    ||||||||||| |||||||||||||||||||||||||| ||||    
T  22343334 attccacttgtgtaccattaaggtatcaatggtatatatcatt 22343376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 397
Target Start/End: Complemental strand, 35869744 - 35869703
Alignment:
Q  356 ttccacttgtataccattaaggtatcaatggtatataccatt 397  Q
    |||||||||| ||||||||||||| |||||||||||||||||    
T  35869744 ttccacttgtgtaccattaaggtaccaatggtatataccatt 35869703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 352 - 397
Target Start/End: Original strand, 55590476 - 55590521
Alignment:
Q  352 cggattccacttgtataccattaaggtatcaatggtatataccatt 397  Q
    |||||||||||||| ||||||||||||| |||||||||||| ||||    
T  55590476 cggattccacttgtgtaccattaaggtaccaatggtatatatcatt 55590521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 352 - 397
Target Start/End: Original strand, 21260788 - 21260833
Alignment:
Q  352 cggattccacttgtataccattaaggtatcaatggtatataccatt 397  Q
    |||||||||||| ||||||||||||||| ||||| |||||| ||||    
T  21260788 cggattccacttatataccattaaggtaccaatgatatatatcatt 21260833  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 353 - 397
Target Start/End: Original strand, 21603954 - 21603998
Alignment:
Q  353 ggattccacttgtataccattaaggtatcaatggtatataccatt 397  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||    
T  21603954 ggattccacttgtgtaccattaaggtaccaatggtatataccatt 21603998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 352 - 397
Target Start/End: Complemental strand, 34392258 - 34392213
Alignment:
Q  352 cggattccacttgtataccattaaggtatcaatggtatataccatt 397  Q
    |||||||||||||| ||||||| ||||| |||||||||||||||||    
T  34392258 cggattccacttgtgtaccattgaggtaccaatggtatataccatt 34392213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 352 - 397
Target Start/End: Complemental strand, 37358098 - 37358053
Alignment:
Q  352 cggattccacttgtataccattaaggtatcaatggtatataccatt 397  Q
    |||||||||||||| || |||||||||| ||||| |||||||||||    
T  37358098 cggattccacttgtgtatcattaaggtaccaatgatatataccatt 37358053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 393
Target Start/End: Original strand, 7381687 - 7381727
Alignment:
Q  353 ggattccacttgtataccattaaggtatcaatggtatatac 393  Q
    ||||||| ||||| ||||||||||||| |||||||||||||    
T  7381687 ggattccgcttgtgtaccattaaggtaccaatggtatatac 7381727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 353 - 397
Target Start/End: Original strand, 32676131 - 32676175
Alignment:
Q  353 ggattccacttgtataccattaaggtatcaatggtatataccatt 397  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||    
T  32676131 ggattccacttgtgtaccattaaggtaccaatggtatataccatt 32676175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 352 - 397
Target Start/End: Complemental strand, 29119501 - 29119456
Alignment:
Q  352 cggattccacttgtataccattaaggtatcaatggtatataccatt 397  Q
    ||||| |||||||| ||||||||||||| |||||||||||||||||    
T  29119501 cggataccacttgtgtaccattaaggtaccaatggtatataccatt 29119456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 353 - 397
Target Start/End: Original strand, 25161304 - 25161348
Alignment:
Q  353 ggattccacttgtataccattaaggtatcaatggtatataccatt 397  Q
    ||||||||||||| ||||||||| || ||||||||||||||||||    
T  25161304 ggattccacttgtgtaccattaaagtctcaatggtatataccatt 25161348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 399
Target Start/End: Original strand, 2569037 - 2569078
Alignment:
Q  358 ccacttgtataccattaaggtatcaatggtatataccatttg 399  Q
    |||||||| ||||||||||||| |||||||||||| ||||||    
T  2569037 ccacttgtgtaccattaaggtaccaatggtatatatcatttg 2569078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 352 - 393
Target Start/End: Complemental strand, 46435630 - 46435589
Alignment:
Q  352 cggattccacttgtataccattaaggtatcaatggtatatac 393  Q
    ||||| |||||||| ||||||||||||| |||||||||||||    
T  46435630 cggataccacttgtgtaccattaaggtaccaatggtatatac 46435589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 351 - 397
Target Start/End: Complemental strand, 10179941 - 10179895
Alignment:
Q  351 gcggattccacttgtataccattaaggtatcaatggtatataccatt 397  Q
    ||||||||||||||| ||||||||| ||| |||||||||||||||||    
T  10179941 gcggattccacttgtgtaccattaaagtaccaatggtatataccatt 10179895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 352 - 397
Target Start/End: Original strand, 50934494 - 50934539
Alignment:
Q  352 cggattccacttgtataccattaaggtatcaatggtatataccatt 397  Q
    |||||| ||||||| ||||||||||||| |||||||||||||||||    
T  50934494 cggatttcacttgtgtaccattaaggtaccaatggtatataccatt 50934539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 353 - 397
Target Start/End: Complemental strand, 32319541 - 32319497
Alignment:
Q  353 ggattccacttgtataccattaaggtatcaatggtatataccatt 397  Q
    |||||| |||||| ||||||||||||| |||||||||||||||||    
T  32319541 ggattctacttgtgtaccattaaggtaccaatggtatataccatt 32319497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 353 - 393
Target Start/End: Original strand, 44380249 - 44380289
Alignment:
Q  353 ggattccacttgtataccattaaggtatcaatggtatatac 393  Q
    ||||||||||||| ||||||||||||| |||||||||||||    
T  44380249 ggattccacttgtgtaccattaaggtaccaatggtatatac 44380289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 397
Target Start/End: Complemental strand, 10018744 - 10018698
Alignment:
Q  351 gcggattccacttgtataccattaaggtatcaatggtatataccatt 397  Q
    ||||||||||||||| ||||||||| ||| ||||| |||||||||||    
T  10018744 gcggattccacttgtgtaccattaaagtaccaatgttatataccatt 10018698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 392
Target Start/End: Complemental strand, 10123284 - 10123243
Alignment:
Q  351 gcggattccacttgtataccattaaggtatcaatggtatata 392  Q
    ||||||||||||||| ||||||||| ||||||||| ||||||    
T  10123284 gcggattccacttgtgtaccattaaagtatcaatgttatata 10123243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 397
Target Start/End: Original strand, 47426345 - 47426389
Alignment:
Q  353 ggattccacttgtataccattaaggtatcaatggtatataccatt 397  Q
    |||| |||||||| ||||||||||||| |||| ||||||||||||    
T  47426345 ggataccacttgtgtaccattaaggtaccaatagtatataccatt 47426389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 352 - 397
Target Start/End: Complemental strand, 13183 - 13138
Alignment:
Q  352 cggattccacttgtataccattaaggtatcaatggtatataccatt 397  Q
    |||||| ||||||| ||||||||||||| |||||||||||||||||    
T  13183 cggatttcacttgtgtaccattaaggtaccaatggtatataccatt 13138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 352 - 397
Target Start/End: Complemental strand, 1212021 - 1211976
Alignment:
Q  352 cggattccacttgtataccattaaggtatcaatggtatataccatt 397  Q
    |||||| ||||||| ||||||||||||| |||||||||||||||||    
T  1212021 cggatttcacttgtgtaccattaaggtaccaatggtatataccatt 1211976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 396
Target Start/End: Original strand, 11753167 - 11753205
Alignment:
Q  358 ccacttgtataccattaaggtatcaatggtatataccat 396  Q
    |||||||| ||||||||||||| ||||||||||||||||    
T  11753167 ccacttgtgtaccattaaggtaccaatggtatataccat 11753205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 352 - 392
Target Start/End: Original strand, 34188 - 34228
Alignment:
Q  352 cggattccacttgtataccattaaggtatcaatggtatata 392  Q
    |||||||||||||| ||||||||||||| ||||||||||||    
T  34188 cggattccacttgtgtaccattaaggtaccaatggtatata 34228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 353 - 397
Target Start/End: Original strand, 35341531 - 35341575
Alignment:
Q  353 ggattccacttgtataccattaaggtatcaatggtatataccatt 397  Q
    ||||||||||||| ||||||||||||| ||||| |||||||||||    
T  35341531 ggattccacttgtgtaccattaaggtaccaatgatatataccatt 35341575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 397
Target Start/End: Complemental strand, 40893218 - 40893174
Alignment:
Q  353 ggattccacttgtataccattaaggtatcaatggtatataccatt 397  Q
    |||| ||||||||||||||| || |||| ||||||||||||||||    
T  40893218 ggataccacttgtataccatcaaagtattaatggtatataccatt 40893174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 397
Target Start/End: Original strand, 73066 - 73110
Alignment:
Q  353 ggattccacttgtataccattaaggtatcaatggtatataccatt 397  Q
    |||| ||||||||||||||| || |||| ||||||||||||||||    
T  73066 ggataccacttgtataccatcaaagtattaatggtatataccatt 73110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 397
Target Start/End: Complemental strand, 41179739 - 41179695
Alignment:
Q  353 ggattccacttgtataccattaaggtatcaatggtatataccatt 397  Q
    ||||||||||||| ||||||||||||| ||||| |||||| ||||    
T  41179739 ggattccacttgtgtaccattaaggtaccaatgatatatatcatt 41179695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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