View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11821_low_13 (Length: 380)
Name: NF11821_low_13
Description: NF11821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11821_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 19 - 367
Target Start/End: Complemental strand, 39117633 - 39117285
Alignment:
| Q |
19 |
gaaacgtagccatgccgcgacggagtcatttctcccttccggtctaaaatccgaaaagctcagcctcccatcacttcaatcaaagatgaaatgcgaccct |
118 |
Q |
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| T |
39117633 |
gaaacgtagccatgccgcgacggagtcatttctcccctccggtctaaaatccgaaaagctcagcctcccatcacttcaatcaaagatgaaatgcgaccct |
39117534 |
T |
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| Q |
119 |
gaaggctacgaatccgaactcctcttaatccgcagccaattcaactcctcccttgaactcttccaacaacaatccgccatgaacttcacttccatttccg |
218 |
Q |
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| T |
39117533 |
gaaggctacgaatccgaactcctcttaatccgcagccaattcaactcctcccttgaactcttccaacaacaatccgccatgaacttcacttccatttccg |
39117434 |
T |
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| Q |
219 |
gcatctccaacgatcccaccgtcgccaaagatctcgctgataaagccatgttcctctctcatctcacctccttttaccctcaacacctctctcaattccc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39117433 |
gcatctccaacgatcccaccgtcgccaaagatctcgctgataaagccatgttcctctctcatctcacctccttttaccctcaacacctctctcaattccc |
39117334 |
T |
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| Q |
319 |
taacaaactcgccgagttgcttcgttgcgctgctcgaacacttccttct |
367 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39117333 |
taacaaactcgctgagttgcttcgttgcgctgctcgaacacttccttct |
39117285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 248 - 367
Target Start/End: Complemental strand, 53901164 - 53901047
Alignment:
| Q |
248 |
gatctcgctgataaagccatgttcctctctcatctcacctccttttaccctcaacacctctctcaattccctaacaaactcgccgagttgcttcgttgcg |
347 |
Q |
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|||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||| | |||||||||||||||||| |||||||||| |||| |
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| T |
53901164 |
gatctcgc-gataaagccatgttcctctttcatctcacctcctttcaccctcaacacctctatgaattccctaacaaactcgttgagttgcttc-atgcg |
53901067 |
T |
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| Q |
348 |
ctgctcgaacacttccttct |
367 |
Q |
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| T |
53901066 |
ctgctcgaacgcttccttct |
53901047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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