View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11821_low_17 (Length: 367)
Name: NF11821_low_17
Description: NF11821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11821_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 151; Significance: 8e-80; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 3 - 189
Target Start/End: Complemental strand, 28586285 - 28586099
Alignment:
| Q |
3 |
tccagaagtcctcatttatccgacttagtttagtcattctccttgggcatttaaaatattgcactagactatgatgcattcaaatattactcaagagtat |
102 |
Q |
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| T |
28586285 |
tccagaagtcctcatttatccgacttagtttagtcattctccatgggcatttaaaatattgcactagactatgatgcattcaaatattactctagagtat |
28586186 |
T |
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| Q |
103 |
ggttgccaaaatcgaaatcccgctaaaaattgaggatatagaaaaagcgtagatcataggattgtaacaaaggtcataatatcccac |
189 |
Q |
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| T |
28586185 |
ggttgccaaaatcgaaatcccactaaaaattgatggtatagaaaaagcgtagatcataggatcgtaataaagatcgtaatatcccac |
28586099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 245 - 287
Target Start/End: Complemental strand, 28586039 - 28585997
Alignment:
| Q |
245 |
ctttcattaatcataatttttattgtcttaagcatcatctaag |
287 |
Q |
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| T |
28586039 |
ctttcattaatcataattttcattgtcttaagcatcatctaag |
28585997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 6739386 - 6739444
Alignment:
| Q |
140 |
atagaaaaagcgtagatcataggattgtaacaaaggtcataatatcccacctaatagac |
198 |
Q |
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| T |
6739386 |
atagaaagagcgtagatcataggatcgtaacaaggatcgtaagctcccacctaatagac |
6739444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 101 - 198
Target Start/End: Original strand, 41708551 - 41708650
Alignment:
| Q |
101 |
atggttgccaaaatcgaaatcccgctaaaaattga--ggatatagaaaaagcgtagatcataggattgtaacaaaggtcataatatcccacctaatagac |
198 |
Q |
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| T |
41708551 |
atggttgtcaaaatcgagatcccactaaagatcgttggggtatagaaagagcgtagatcgtaggatcgtaacaaggatcataagatcccacctaatagac |
41708650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 198
Target Start/End: Complemental strand, 36653218 - 36653120
Alignment:
| Q |
101 |
atggttgccaaaatcgaaatcccgctaaaaat--tgaggatatagaaaaagcgtagatcataggattgtaacaaaggtcataatatcccacctaatagac |
198 |
Q |
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| T |
36653218 |
atggttgtcaaaatcgggatcccactaaagatcgtgagg-tatagaaaaagcgtagatcgtaggatcgtaacaaggatcgtaagatcccatataatagac |
36653120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 44266565 - 44266624
Alignment:
| Q |
139 |
tatagaaaaagcgtagatcataggattgtaacaaaggtcataatatcccacctaatagac |
198 |
Q |
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| T |
44266565 |
tatagaaagagcgtagatcgtaggatcgtaacaaggatcgtaagatcccacctaatagac |
44266624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 197
Target Start/End: Complemental strand, 49835128 - 49835074
Alignment:
| Q |
143 |
gaaaaagcgtagatcataggattgtaacaaaggtcataatatcccacctaataga |
197 |
Q |
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| T |
49835128 |
gaaaaagcgtagatcgtaggatcgtaacaaagatcgtaagatcccaccaaataga |
49835074 |
T |
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